genome.fa.s68.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  64  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15225582--15225635	16	3.4	15	78	12	54	9	7	3	79	1.03
15229061--15229086	9	2.9	9	100	0	52	88	0	0	11	0.52
15229168--15229222	17	3.2	18	75	12	53	67	0	0	32	0.91
15229169--15229208	16	2.5	17	84	12	57	65	0	0	35	0.93
15231643--15231713	7	10.0	7	74	7	54	18	2	4	74	1.10
15231646--15231687	22	2.0	22	90	4	68	14	4	7	73	1.21
15231664--15231759	15	6.1	15	78	17	56	27	2	2	68	1.11
15231644--15231698	20	2.7	20	78	15	67	16	3	5	74	1.15
15231671--15231759	4	22.2	4	76	17	78	28	2	1	68	1.08
15231686--15231810	40	3.2	37	78	17	121	31	3	1	64	1.19
15231781--15231821	16	2.4	16	88	8	55	34	2	0	63	1.08
15232645--15232700	3	18.7	3	96	0	103	30	0	1	67	1.01
15232730--15232789	5	11.8	5	77	13	52	15	6	0	78	0.95
15232805--15233003	59	3.4	58	93	2	328	49	7	9	34	1.63
15232969--15233019	16	3.2	16	68	15	52	56	7	5	29	1.51
15232912--15233083	89	1.9	89	91	3	285	48	6	8	36	1.60
15232912--15233034	31	4.1	31	73	13	123	51	6	8	33	1.59
15232853--15233122	146	1.8	148	89	4	431	47	7	10	35	1.64
15233123--15233156	17	2.1	17	88	5	52	38	0	11	50	1.39
15233000--15233172	58	2.9	59	82	5	181	44	5	10	39	1.63
15235529--15235564	18	2.0	18	94	0	63	22	19	27	30	1.98
15237072--15237134	22	2.9	22	85	0	90	36	20	9	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15236967--15237253	148	1.9	148	86	2	407	37	17	13	32	1.88
15237116--15237356	126	1.9	125	83	0	311	36	18	14	30	1.90
15240452--15240512	28	2.1	29	87	3	88	49	13	9	27	1.73
15240739--15240769	14	2.2	14	94	0	53	80	0	3	16	0.83
15241776--15241836	27	2.3	27	78	21	74	22	1	11	63	1.36
15242051--15242107	17	3.3	17	87	4	78	77	1	7	14	1.06
15242067--15242107	18	2.3	18	91	0	73	82	0	4	12	0.81
15242895--15242973	9	8.8	9	90	0	59	65	13	0	20	1.26
15242898--15242962	6	10.8	6	94	0	58	67	15	0	16	1.23
15242901--15242935	3	11.7	3	93	0	61	68	28	0	2	1.04
15242934--15243111	3	61.3	3	73	12	122	58	3	5	32	1.40
15243506--15244380	121	7.2	120	80	5	694	45	14	22	18	1.85
15243506--15244393	242	3.7	238	79	5	851	45	14	22	18	1.85
15243506--15244375	363	2.4	361	80	4	959	45	14	22	18	1.85
15245122--15245171	15	3.1	17	80	16	61	0	20	4	76	0.95
15249242--15249293	22	2.2	25	83	13	65	19	3	9	67	1.35
15249312--15249392	36	2.2	35	84	8	99	24	3	8	62	1.40
15249523--15249561	18	2.2	18	85	0	51	74	5	2	17	1.12
15249892--15249931	21	2.0	21	85	5	55	37	35	5	22	1.76
15250341--15250516	3	60.3	3	78	11	152	61	5	2	29	1.33
15255123--15255188	32	2.1	32	88	5	98	18	25	3	53	1.59
15266742--15266785	22	2.0	22	100	0	88	50	4	18	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15268132--15268177	23	2.0	23	84	12	60	32	0	6	60	1.22
15268180--15268220	20	2.0	20	85	0	55	17	0	12	70	1.16
15272198--15272321	18	7.1	18	74	5	110	35	33	4	26	1.78
15272200--15272321	36	3.5	36	91	3	178	35	33	4	26	1.78
15274043--15274076	9	3.9	9	88	7	52	17	2	0	79	0.86
15276881--15276916	2	18.5	2	94	5	65	50	0	0	50	1.00
15277888--15277925	17	2.4	17	86	8	53	65	15	5	13	1.43
15280003--15280261	128	2.0	128	100	0	518	24	12	11	51	1.73
15281510--15281545	10	3.6	10	92	0	54	30	0	19	50	1.48
15289605--15289662	28	2.1	28	90	0	89	39	8	5	46	1.57
15297069--15298504	161	8.9	161	82	3	1408	32	10	15	41	1.81
15297069--15298504	481	3.0	481	82	3	1552	32	10	15	41	1.81
15297069--15298500	642	2.2	644	82	2	1741	32	10	15	41	1.81
15300328--15300379	23	2.2	25	86	6	72	65	1	1	30	1.14
15300357--15300406	18	2.7	18	75	3	55	62	0	2	36	1.07
15303937--15304126	63	3.1	60	70	14	152	39	15	13	31	1.87
15304202--15304424	120	1.9	121	81	8	276	35	16	13	34	1.88
15304767--15304891	62	2.0	64	84	10	168	32	16	11	40	1.83
15304787--15305309	210	2.5	209	80	5	527	32	16	14	35	1.90
15305205--15305374	63	2.7	64	79	7	159	30	16	13	39	1.87
15305236--15305374	64	2.2	63	79	5	145	30	17	12	39	1.87
15306545--15306620	39	1.9	39	81	5	91	18	17	11	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15306555--15306652	36	2.6	37	77	4	99	20	19	8	52	1.71
15306743--15306973	35	6.6	35	73	11	125	19	21	11	48	1.79
15306821--15306942	36	3.4	35	76	9	113	16	22	14	46	1.83
15307236--15307303	35	1.9	35	85	5	93	19	11	10	58	1.61
15307657--15307738	35	2.3	35	85	0	101	25	26	8	39	1.85
15309114--15309150	18	2.1	18	89	0	56	59	0	0	40	0.97
15311035--15311061	14	1.9	14	100	0	54	70	0	0	29	0.88
15311189--15311239	13	3.9	13	82	10	68	56	25	5	11	1.57
15317899--15317925	7	3.9	7	100	0	54	29	14	11	44	1.80
15318319--15318448	39	3.4	39	90	2	201	13	1	62	22	1.40
15318679--15318716	20	2.0	20	89	5	60	34	0	5	60	1.19
15321431--15321492	28	2.2	29	80	11	74	35	4	3	56	1.37
15322397--15322432	18	2.0	18	88	0	54	25	2	44	27	1.68
15322779--15322832	21	2.8	18	79	15	72	29	38	3	27	1.74
15322783--15322825	21	2.0	21	95	0	77	25	44	2	27	1.66
15331699--15331745	22	2.2	21	85	11	60	82	0	8	8	0.83
15331698--15331764	26	2.5	27	81	13	84	80	1	10	7	0.96
15331698--15331764	27	2.5	28	82	7	84	80	1	10	7	0.96
15332786--15333196	44	9.5	44	75	11	298	23	13	18	44	1.85
15332785--15333180	86	4.6	89	80	7	288	23	13	18	44	1.85
15332785--15333190	42	9.4	44	76	8	305	23	13	17	44	1.85
15333445--15333592	4	37.5	4	70	15	69	30	4	0	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15333449--15333591	30	4.9	28	75	13	94	30	4	0	64	1.17
15333454--15333572	17	7.2	17	73	20	83	32	4	0	62	1.20
15333922--15333971	19	2.6	19	100	0	100	20	0	24	56	1.43
15334122--15334163	14	3.1	14	79	6	50	57	0	42	0	0.99
15334374--15334410	3	12.7	3	88	5	58	27	0	0	72	0.84
15334362--15334414	9	5.9	9	84	10	65	22	1	0	75	0.90
15334382--15334497	12	9.8	12	72	16	57	24	2	3	69	1.16
15334442--15334497	5	10.4	5	85	11	67	17	3	0	78	0.89
15334436--15334497	6	11.0	6	84	8	62	17	4	0	77	0.94
15334514--15334857	60	5.8	59	82	6	372	45	6	10	38	1.63
15338644--15338761	59	2.0	59	93	0	200	31	8	21	38	1.83
15340854--15340923	3	23.7	3	88	2	106	32	4	0	62	1.14
15341131--15341269	63	2.2	63	88	0	206	33	20	19	26	1.96
15342605--15342903	142	2.1	144	79	8	306	42	10	11	35	1.76
15343500--15344145	104	6.2	104	82	3	680	38	14	14	32	1.86
15344111--15344152	22	1.9	22	90	9	68	30	14	23	30	1.94
15344572--15344729	41	3.9	41	78	1	147	33	12	17	36	1.87
15344813--15345130	41	7.9	40	71	17	167	32	11	18	37	1.87
15344809--15345089	78	3.5	80	74	10	243	32	11	18	37	1.86
15344910--15345061	76	2.0	77	82	2	189	30	8	18	42	1.80
15345109--15345150	15	2.8	15	88	0	57	47	16	16	19	1.83
15345134--15345240	42	2.6	40	84	11	137	27	12	18	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15345127--15345240	40	2.8	40	82	11	142	28	12	18	40	1.87
15344988--15345239	139	1.8	136	82	3	326	32	11	19	36	1.88
15345174--15345365	42	4.6	41	72	18	130	30	11	19	38	1.87
15346304--15346343	18	2.3	17	86	4	53	7	0	10	82	0.84
15351320--15351369	26	1.9	26	83	0	64	62	10	4	24	1.44
15352832--15352873	3	14.0	3	94	0	75	33	2	0	64	1.07
15356264--15356304	21	2.1	19	86	13	57	46	2	2	48	1.28
15356386--15356442	25	2.3	25	75	6	62	35	0	5	59	1.20
15356470--15356522	20	2.8	18	81	13	61	67	1	0	30	1.01
15356478--15356515	20	1.9	20	94	0	67	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113