genome.fa.s68.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  71  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16341186--16341275	41	2.2	41	83	0	108	52	6	20	21	1.69
16341187--16341310	41	3.2	40	69	13	105	52	8	18	20	1.70
16341365--16341509	76	1.9	76	85	2	202	50	9	18	21	1.75
16341171--16341563	199	2.0	199	92	0	660	50	9	17	21	1.74
16343514--16343744	125	1.8	125	81	3	286	51	13	16	18	1.76
16343782--16343838	19	3.1	19	69	16	57	43	10	21	24	1.83
16345922--16346112	101	1.9	103	82	4	244	52	13	14	19	1.74
16347480--16347885	171	2.3	170	76	5	397	51	11	17	20	1.75
16348304--16348402	51	1.9	51	85	4	137	60	9	10	20	1.55
16348336--16348375	16	2.4	16	87	4	53	62	7	12	17	1.52
16348516--16348560	20	2.2	21	92	4	74	62	13	8	15	1.54
16348489--16348594	55	1.9	56	84	5	144	55	11	15	17	1.68
16348446--16348611	90	1.8	90	86	0	242	55	13	13	18	1.69
16348637--16348782	78	1.9	78	91	0	238	56	10	15	17	1.67
16356719--16357964	211	5.9	210	74	9	559	51	13	15	19	1.75
16357652--16357767	40	3.0	39	85	8	141	55	16	9	18	1.68
16357685--16357752	20	3.4	20	65	15	59	60	16	5	17	1.55
16357652--16357791	75	1.9	75	86	0	199	53	16	10	20	1.71
16358129--16358315	98	1.9	98	83	2	241	54	9	17	19	1.69
16358049--16358415	203	1.8	203	83	1	484	52	11	16	19	1.74
16358325--16358619	139	2.1	139	80	6	321	50	13	18	17	1.78
16359198--16359573	71	5.4	71	71	13	176	52	11	15	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16360661--16361035	139	2.7	139	76	8	345	51	10	15	22	1.74
16365730--16365782	15	2.9	18	76	23	58	49	11	15	24	1.77
16366082--16366174	37	2.6	37	82	3	118	55	9	13	20	1.66
16369691--16369990	135	2.2	135	76	5	293	50	13	17	19	1.79
16373037--16373358	139	2.4	137	78	9	325	50	13	16	19	1.78
16373653--16373829	94	1.9	94	79	2	203	55	7	16	20	1.66
16374848--16374947	52	1.9	52	83	0	128	53	10	14	23	1.70
16374810--16374981	87	2.0	86	82	6	213	55	11	12	20	1.66
16374777--16375017	122	2.0	122	90	1	376	54	11	13	20	1.70
16374740--16375051	157	2.0	157	83	5	389	55	11	13	19	1.69
16374704--16375089	192	2.0	193	90	2	607	54	11	13	20	1.69
16375468--16376826	278	4.9	279	76	9	803	51	13	16	18	1.77
16377289--16377458	87	2.0	86	81	6	200	54	12	16	17	1.72
16377323--16377428	53	2.0	52	90	1	167	51	11	16	19	1.74
16377632--16377752	64	1.9	64	81	10	149	56	13	13	17	1.68
16377503--16377849	99	3.4	101	78	10	294	53	13	14	17	1.72
16377562--16377836	134	2.1	134	81	4	322	53	13	15	17	1.72
16378373--16378433	19	3.3	19	71	17	65	59	11	13	16	1.62
16378383--16378435	17	2.9	19	72	11	65	58	9	15	16	1.62
16378723--16378785	20	3.4	20	62	20	55	55	6	14	23	1.62
16380375--16380430	26	2.2	26	86	0	76	60	14	10	14	1.58
16380286--16380534	133	1.9	130	81	7	297	54	13	15	16	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16381683--16382024	177	1.9	176	82	6	424	53	14	14	17	1.73
16381739--16382271	212	2.6	206	79	7	553	53	15	14	17	1.74
16381320--16383260	141	13.9	140	71	10	384	52	12	15	18	1.74
16383328--16383398	20	3.9	19	69	22	55	53	9	15	21	1.70
16383191--16383359	92	1.8	93	80	3	207	56	8	15	20	1.65
16383097--16383466	197	1.9	196	79	5	424	52	11	16	20	1.74
16384044--16384422	137	2.7	136	77	8	361	52	12	15	19	1.74
16383312--16402846	141	139.1	141	70	11	3219	52	12	15	20	1.74
16385959--16386064	55	1.9	55	90	3	169	55	16	12	16	1.69
16386449--16386511	32	2.0	32	90	0	99	52	9	17	20	1.72
16389466--16389522	18	3.2	18	69	14	55	54	5	17	22	1.63
16392367--16392662	156	1.9	157	80	4	348	51	12	15	19	1.75
16392335--16392700	192	1.9	191	80	3	432	51	13	15	19	1.75
16395773--16395930	69	2.3	70	84	3	194	53	12	15	18	1.72
16395779--16395961	69	2.7	69	81	3	190	54	12	14	19	1.71
16396153--16396456	161	1.9	160	80	10	352	54	12	12	21	1.70
16397573--16397636	30	2.1	30	85	5	85	54	14	12	18	1.70
16397409--16397800	206	1.9	206	80	7	456	51	11	16	21	1.75
16398884--16399026	68	2.1	68	82	3	171	57	11	12	18	1.64
16399815--16400071	138	1.9	138	80	1	309	54	12	13	19	1.71
16400164--16400305	72	2.0	73	80	9	166	54	11	12	21	1.68
16401089--16401154	30	2.2	30	83	0	78	56	10	19	13	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16401594--16401911	170	1.9	171	82	3	399	53	11	14	20	1.71
16401426--16402558	452	2.5	448	77	7	1089	52	11	15	20	1.74
16401806--16402192	142	2.7	140	79	7	347	53	11	14	20	1.71
16401277--16402835	209	7.4	207	72	11	549	52	11	15	20	1.73
16408589--16415470	35	195.8	35	70	11	2279	51	13	15	19	1.75
16409378--16410865	106	14.0	104	70	12	370	51	12	15	19	1.75
16411144--16411231	34	2.5	35	87	1	115	59	9	12	19	1.60
16411599--16412430	211	3.9	210	75	7	632	52	13	15	18	1.74
16412223--16412421	106	1.9	105	84	5	267	51	12	15	20	1.76
16412496--16412761	106	2.6	102	77	8	258	50	13	15	21	1.77
16413019--16413460	240	1.8	244	80	3	545	53	13	13	19	1.72
16415091--16415390	107	2.9	103	78	10	290	55	12	13	18	1.69
16417590--16500824	35	2367.8	36	70	11	6016	52	12	16	19	1.75
16418778--16418833	27	2.0	28	86	3	78	48	14	17	19	1.81
16418748--16418927	71	2.8	62	72	16	148	51	11	16	20	1.76
16418694--16418939	133	1.8	133	82	5	318	52	12	15	19	1.74
16421407--16421700	106	2.8	105	79	6	249	52	14	16	16	1.75
16422809--16423044	106	2.3	105	80	10	254	55	10	13	20	1.68
16423137--16423359	106	2.1	105	78	6	227	54	8	17	18	1.68
16424321--16424461	75	1.9	75	82	5	178	55	11	15	17	1.69
16424927--16425186	142	1.8	139	83	5	344	52	10	16	20	1.72
16424927--16425240	142	2.2	142	79	5	325	51	10	16	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16425990--16426059	33	2.3	29	78	9	68	48	8	21	21	1.76
16426194--16426791	102	5.8	102	74	8	325	51	11	16	20	1.75
16426712--16427523	141	5.8	140	74	8	414	52	13	15	19	1.75
16427985--16428038	18	3.1	18	69	20	51	53	14	11	20	1.71
16428753--16429096	106	3.3	102	75	8	241	48	12	18	20	1.80
16429718--16430027	169	1.8	171	86	5	459	53	12	16	17	1.73
16429940--16430147	111	1.9	111	81	4	258	54	12	16	17	1.71
16431539--16432103	242	2.3	242	77	9	517	53	13	14	19	1.73
16433310--16433443	33	4.0	33	80	3	144	54	11	17	16	1.71
16434825--16435058	116	2.0	116	94	0	414	52	12	15	19	1.75
16434895--16434988	46	2.0	46	83	0	116	54	12	11	21	1.69
16434768--16435107	186	1.8	186	86	2	495	52	12	15	18	1.73
16436270--16436670	217	1.9	216	83	4	522	50	10	18	20	1.76
16437462--16437636	93	1.9	93	85	2	244	52	13	17	16	1.74
16439501--16440099	141	4.3	141	77	5	417	53	12	14	20	1.72
16441050--16441109	31	1.9	32	82	3	77	55	11	18	15	1.70
16442165--16442346	101	1.8	99	84	4	249	54	12	15	17	1.71
16443741--16444187	208	2.1	207	79	8	458	52	12	16	18	1.74
16445329--16445622	98	2.9	98	77	10	231	55	13	14	17	1.70
16446479--16446648	72	2.4	71	83	3	200	51	10	18	19	1.74
16447154--16447248	36	2.6	36	81	1	100	54	17	12	14	1.70
16448000--16448096	50	1.9	50	100	0	194	52	10	18	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16457804--16460609	211	13.4	206	71	10	653	52	12	15	19	1.74
16457983--16458613	239	2.6	237	79	8	666	53	13	14	18	1.72
16457968--16461281	246	13.5	239	71	11	868	52	12	15	19	1.73
16464422--16464670	138	1.8	138	87	1	374	56	10	12	20	1.65
16455385--16501382	35	1317.8	34	70	13	9118	52	12	15	19	1.75
16464835--16465181	142	2.5	138	78	10	341	51	14	16	18	1.77
16465307--16465343	19	1.9	19	100	0	74	54	21	10	13	1.69
16465374--16465629	71	3.6	69	76	9	207	56	12	13	17	1.67
16465732--16466118	172	2.2	173	83	3	483	52	12	16	18	1.74
16466470--16466520	22	2.4	22	83	6	61	54	13	17	13	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113