genome.fa.s68.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  10  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993729--2993780	14	3.6	14	71	2	50	67	3	0	28	1.08
3003490--3003515	2	13.0	2	100	0	52	50	0	0	50	1.00
3008423--3008463	11	3.7	11	86	0	64	24	0	24	51	1.49
3008487--3008633	52	2.8	52	85	8	176	45	6	19	28	1.74
3012182--3012221	18	2.2	18	91	8	64	62	0	5	32	1.17
3014757--3014848	30	3.2	30	73	4	91	44	2	2	51	1.25
3023670--3023741	35	2.1	35	100	0	144	38	13	22	25	1.91
3035217--3035252	2	18.5	2	88	5	56	0	44	0	55	0.99
3035432--3035492	21	2.7	22	72	18	54	40	3	1	54	1.27
3036044--3036072	3	10.0	3	92	7	51	34	0	0	65	0.93
3039104--3039134	2	15.5	2	93	0	53	48	0	3	48	1.17
3040838--3040879	21	2.0	21	85	0	57	30	9	9	50	1.67
3044573--3044629	2	28.5	2	96	0	105	50	1	47	0	1.11
3049705--3049877	82	2.1	81	76	14	176	52	5	5	37	1.46
3064942--3064974	3	11.0	3	93	0	57	69	0	0	30	0.88
3066391--3066438	25	2.0	25	84	8	64	50	2	0	47	1.12
3067023--3067063	15	2.6	16	78	17	50	43	7	0	48	1.30
3067077--3067109	17	1.9	17	88	11	50	12	15	3	69	1.30
3068247--3068276	2	15.0	2	100	0	60	50	0	0	50	1.00
3079077--3079410	164	2.0	165	80	2	377	36	11	20	32	1.88
3091120--3091150	11	2.8	11	95	0	53	0	12	0	87	0.55
3096273--3096325	21	2.4	22	81	15	65	52	3	1	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3096291--3096344	21	2.8	19	83	8	56	59	1	0	38	1.08
3096603--3096645	23	1.9	22	81	13	52	46	0	0	53	1.00
3101130--3101157	2	14.0	2	100	0	56	50	50	0	0	1.00
3110942--3111020	38	2.1	38	97	0	149	30	22	13	32	1.93
3124102--3124175	37	2.0	37	97	0	139	41	13	27	17	1.87
3126829--3126861	2	16.5	2	100	0	66	51	0	48	0	1.00
3129043--3129082	21	1.9	21	90	10	64	60	0	0	40	0.97
3139226--3139534	134	2.3	134	77	4	336	27	16	22	34	1.95
3146874--3147135	129	2.0	129	99	0	515	17	41	12	27	1.86
3157619--3157688	36	1.9	36	82	5	88	12	7	41	38	1.71
3157991--3158113	36	3.4	36	77	6	124	15	8	39	36	1.77
3163537--3163621	43	2.0	43	83	4	109	30	16	5	47	1.70
3168415--3168480	22	3.0	21	72	18	55	50	3	3	43	1.33
3169109--3169172	32	2.1	30	82	11	76	39	6	10	43	1.65
3170081--3170183	30	3.5	30	81	7	115	57	1	0	39	1.16
3170139--3170195	29	2.0	28	82	3	69	59	7	1	31	1.34
3185290--3185333	20	2.2	20	91	4	70	38	6	13	40	1.71
3191627--3191714	30	3.0	30	78	4	92	54	2	7	35	1.42
3213339--3213492	63	2.5	63	84	3	195	42	3	5	48	1.41
3214818--3214895	29	2.7	29	76	4	86	60	2	2	34	1.24
3220184--3220230	18	2.8	17	78	9	53	59	0	0	40	0.97
3225529--3225614	39	2.2	38	91	2	136	41	8	22	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3230096--3230146	27	1.9	26	88	4	75	50	1	1	45	1.24
3234323--3234408	44	2.0	44	83	0	109	29	13	13	43	1.83
3238653--3238709	22	2.6	22	85	0	87	33	14	15	36	1.88
3241247--3241280	2	17.0	2	100	0	68	50	0	0	50	1.00
3246402--3246434	9	3.6	9	92	8	57	9	0	57	33	1.30
3246405--3246434	10	3.1	10	90	9	53	10	0	60	30	1.30
3248734--3248763	2	15.5	2	93	6	53	46	0	0	53	1.00
3253502--3253569	18	3.4	21	71	28	67	58	0	0	41	0.98
3253533--3253593	31	1.9	31	83	6	77	54	0	0	45	1.00
3253528--3253601	33	2.3	31	74	4	76	50	0	0	50	1.00
3255707--3255749	19	2.3	19	83	0	50	62	0	2	34	1.08
3256465--3256494	15	2.0	15	93	0	51	63	26	10	0	1.26
3278400--3278497	42	2.4	41	80	13	112	46	2	1	50	1.19
3279638--3279662	2	12.5	2	100	0	50	48	0	0	52	1.00
3303047--3303091	17	2.5	17	82	17	56	20	4	6	68	1.29
3303196--3303231	18	1.9	19	88	5	56	36	8	8	47	1.64
3303154--3303295	60	2.4	58	83	6	194	50	6	6	36	1.53
3303163--3303425	129	2.0	129	82	7	320	48	3	8	39	1.52
3303290--3303578	59	4.9	59	79	9	277	48	3	10	38	1.54
3303159--3303578	118	3.4	118	79	10	409	48	4	9	38	1.54
3303429--3303520	27	3.2	26	68	19	67	46	2	9	41	1.49
3310351--3310399	20	2.5	20	93	0	80	8	16	4	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3317343--3317382	19	2.1	19	85	0	53	40	10	5	45	1.60
3333446--3333490	17	2.6	17	82	0	54	55	4	2	37	1.32
3333544--3333595	21	2.4	21	96	3	95	50	0	0	50	1.00
3337106--3337169	32	2.0	32	87	0	92	48	18	14	18	1.81
3352029--3352060	12	2.7	12	95	0	55	12	0	6	81	0.87
3352287--3352337	23	2.0	23	82	14	57	33	7	0	58	1.27
3362238--3362284	24	2.0	24	86	0	67	19	40	14	25	1.90
3369188--3369223	18	2.0	18	89	10	56	0	22	16	61	1.35
3374647--3374689	21	2.0	21	95	0	77	34	16	18	30	1.93
3375652--3375676	12	2.1	12	100	0	50	32	8	44	16	1.76
3382803--3382837	2	17.5	2	100	0	70	51	0	48	0	1.00
3393410--3393469	21	3.2	21	65	34	64	56	11	3	28	1.51
3393407--3393480	34	2.1	36	92	5	125	59	10	2	27	1.44
3393401--3393463	16	3.8	16	72	15	56	57	11	3	28	1.49
3394999--3395032	14	2.4	14	90	9	52	55	11	0	32	1.36
3394994--3395029	19	1.9	18	88	5	54	55	11	0	33	1.35
3400613--3400673	19	3.2	19	82	13	72	47	4	0	47	1.23
3402476--3402563	43	2.0	43	80	4	97	27	10	2	60	1.41
3409857--3409933	24	3.5	24	64	20	67	23	37	19	19	1.94
3409862--3410061	42	4.8	42	94	0	319	25	41	15	18	1.89
3415554--3415637	37	2.3	37	80	15	95	38	4	9	47	1.57
3415791--3415862	20	3.5	20	82	1	72	45	13	5	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3415767--3415866	41	2.5	40	77	9	105	48	11	5	36	1.61
3416004--3416046	13	3.2	13	81	18	52	69	0	0	30	0.88
3416014--3416080	15	4.2	16	75	21	52	74	1	2	20	1.03
3416002--3416046	15	3.1	15	87	6	65	68	0	0	31	0.89
3416019--3416079	24	2.5	26	75	20	60	73	1	3	21	1.06
3416050--3416093	18	2.4	18	84	3	52	77	6	2	13	1.07
3417990--3418025	12	3.0	12	87	0	54	33	0	16	50	1.46
3419962--3420005	2	22.5	2	90	4	72	47	2	0	50	1.13
3435357--3435389	16	2.1	16	88	5	50	51	15	9	24	1.72
3447254--3447312	29	2.1	29	90	6	95	55	10	20	13	1.66
3447261--3447320	29	2.1	27	81	6	66	60	8	18	13	1.58
3449664--3449694	5	6.2	5	100	0	62	19	19	38	22	1.93
3449916--3449999	29	2.9	30	79	13	86	39	9	1	50	1.43
3449862--3450020	30	5.4	29	71	17	96	40	9	0	49	1.40
3450377--3450419	18	2.4	18	92	0	77	23	34	16	25	1.95
3460189--3460232	20	2.2	20	91	0	70	2	38	6	52	1.41
3461490--3461526	15	2.5	15	90	0	56	27	21	32	18	1.97
3469942--3469966	2	12.5	2	100	0	50	48	0	0	52	1.00
3469954--3469992	14	2.8	14	84	0	51	33	0	0	66	0.92
3470891--3470946	5	11.0	5	84	3	76	1	21	1	75	0.99
3470893--3470942	26	2.0	25	88	4	73	2	22	2	74	1.03
3475899--3475925	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3497551--3497575	4	6.2	4	100	0	50	48	0	0	52	1.00
3500036--3500076	22	1.9	22	90	5	66	29	0	4	65	1.13
3501225--3501257	17	1.9	17	93	0	57	9	0	9	81	0.87
3501525--3501557	16	2.0	17	94	5	59	78	0	0	21	0.75
3501702--3501806	44	2.4	43	77	3	111	42	13	10	33	1.78
3501806--3501937	50	2.7	49	83	7	169	42	18	11	27	1.85
3501940--3502673	50	15.6	47	76	11	548	41	18	11	27	1.85
3501992--3502673	143	4.9	142	78	10	576	41	18	12	27	1.86
3501940--3502673	44	15.6	46	76	11	523	41	18	11	27	1.85
3502173--3502673	89	5.4	89	75	12	406	41	18	12	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113