genome.fa.s68.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  60  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14708665--14708776	25	4.5	24	77	12	93	19	34	8	36	1.83
14709310--14709466	52	3.0	52	92	1	244	24	25	10	40	1.86
14709491--14709530	11	3.6	11	86	0	62	52	32	0	15	1.43
14709491--14709533	22	2.0	22	100	0	86	48	32	0	18	1.48
14710977--14711022	21	2.1	21	84	11	58	36	0	2	60	1.09
14711053--14711106	20	2.5	22	79	14	58	59	3	0	37	1.15
14711911--14711935	6	4.2	6	100	0	50	84	0	0	16	0.63
14712404--14712523	61	2.0	61	86	3	170	43	4	12	40	1.62
14713200--14713233	14	2.4	14	90	0	50	61	2	0	35	1.11
14713312--14713358	22	2.0	24	88	8	71	63	6	0	29	1.19
14714165--14714200	18	2.0	19	89	10	58	50	2	0	47	1.15
14714166--14714209	19	2.4	17	82	14	52	56	2	0	40	1.11
14716028--14716078	8	6.4	8	76	17	52	76	0	23	0	0.79
14718686--14718908	44	5.0	46	76	12	155	28	8	14	48	1.74
14718710--14718929	86	2.5	92	79	9	235	28	10	14	47	1.76
14718710--14718968	44	5.9	44	76	7	222	28	10	14	46	1.77
14719996--14720050	24	2.2	25	83	3	67	20	0	5	74	1.01
14720478--14720519	16	2.7	15	82	10	57	66	0	4	28	1.12
14727786--14727827	22	1.9	22	85	9	59	30	28	11	28	1.92
14733267--14733323	9	6.6	9	75	13	57	73	0	22	3	0.98
14733280--14733320	18	2.3	18	91	0	64	78	0	19	2	0.87
14733765--14733801	3	12.3	3	94	0	65	32	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14733979--14734029	3	17.0	3	100	0	102	66	0	0	33	0.92
14738476--14738520	24	2.0	22	86	8	63	53	0	0	46	1.00
14740617--14740717	51	2.0	51	84	0	130	22	14	18	43	1.87
14746714--14746759	23	2.0	23	100	0	92	26	17	21	34	1.95
14749630--14749695	31	2.1	31	88	0	96	43	6	30	19	1.75
14757107--14757182	36	2.1	36	97	0	143	34	2	6	56	1.39
14758186--14758243	24	2.5	23	83	5	71	74	1	6	17	1.12
14759204--14759236	3	11.0	3	100	0	66	66	0	0	33	0.92
14759385--14759467	43	1.9	43	87	4	123	39	9	16	33	1.82
14759404--14759533	43	3.1	43	81	5	140	36	12	17	33	1.87
14759453--14759538	41	2.1	40	87	4	127	37	12	17	32	1.88
14759622--14759758	40	3.5	40	81	7	156	42	15	13	29	1.84
14759854--14759952	36	2.8	35	83	4	110	35	12	18	34	1.88
14771938--14771986	23	2.2	22	85	10	64	71	2	10	16	1.22
14779574--14779600	2	13.5	2	100	0	54	48	0	0	51	1.00
14787107--14787137	2	15.5	2	100	0	62	48	0	0	51	1.00
14792693--14792725	17	1.9	17	88	11	50	63	12	0	24	1.28
14795809--14795842	16	2.1	16	88	5	50	55	0	5	38	1.24
14796407--14796440	18	1.9	18	88	5	52	29	8	0	61	1.26
14802433--14802498	34	1.9	35	87	3	98	34	3	4	57	1.34
14804672--14804711	17	2.4	17	84	12	55	50	10	12	27	1.72
14807294--14807347	26	2.0	28	85	7	76	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14810631--14810672	16	2.5	17	80	7	50	73	2	4	19	1.12
14814061--14814211	57	2.7	56	88	6	209	37	13	5	43	1.68
14814159--14814253	42	2.3	42	88	0	136	40	12	5	42	1.65
14814287--14814365	5	14.6	5	80	15	70	77	0	3	18	0.92
14814267--14814341	6	12.3	6	82	10	91	77	1	2	18	0.96
14814388--14814458	15	5.1	14	83	16	87	73	0	0	26	0.84
14814388--14814459	4	19.5	4	88	11	86	73	0	0	26	0.83
14814388--14814458	11	6.8	11	83	16	82	73	0	0	26	0.84
14815295--14815349	14	3.7	14	74	25	51	61	0	7	30	1.23
14815276--14815404	42	2.9	42	82	10	143	62	0	6	30	1.25
14815276--14815429	20	7.6	20	72	13	91	62	1	5	29	1.30
14815325--14815394	14	4.8	14	74	22	63	64	0	4	31	1.13
14815276--14815396	45	2.8	43	83	8	138	63	0	6	29	1.19
14815325--14815461	37	3.6	37	76	12	136	62	2	3	31	1.24
14815331--14815461	56	2.3	55	80	13	151	62	2	3	31	1.25
14815466--14815522	17	3.2	18	80	9	64	75	3	3	17	1.09
14815481--14815534	29	1.9	28	88	7	83	77	1	1	18	0.95
14815713--14815861	42	3.5	44	80	4	139	40	20	14	24	1.90
14815766--14815887	40	3.0	39	76	11	111	41	21	13	22	1.88
14816899--14816932	17	1.9	18	94	5	61	5	5	0	88	0.64
14816884--14816934	9	5.1	10	76	23	54	11	9	0	78	0.97
14827335--14827608	58	4.8	58	91	2	437	38	12	6	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14827339--14827608	115	2.3	115	91	2	427	38	12	5	43	1.67
14827629--14827707	5	14.8	5	82	15	88	78	0	3	17	0.90
14827621--14827708	6	15.0	6	77	13	69	78	0	4	17	0.91
14827629--14827707	17	4.9	16	84	13	101	78	0	3	17	0.90
14827733--14827773	7	6.0	7	83	11	50	65	0	0	34	0.93
14828619--14828678	20	3.0	20	83	7	77	65	0	5	30	1.14
14828734--14828803	18	3.9	18	73	14	65	72	1	4	21	1.09
14828956--14829001	22	2.2	20	88	7	65	73	4	0	21	1.00
14835448--14835495	13	3.8	12	83	10	51	75	2	2	20	1.02
14837075--14837246	43	4.0	43	100	0	344	32	18	13	34	1.90
14838631--14838690	21	3.0	20	73	9	59	28	21	18	31	1.97
14841820--14842110	96	3.0	92	79	12	273	38	8	10	41	1.71
14841934--14842121	103	1.8	104	85	7	267	41	6	12	39	1.69
14856822--14856870	13	3.7	13	84	10	55	75	2	2	20	1.00
14859082--14859115	2	17.0	2	93	0	59	47	2	0	50	1.16
14859523--14859582	21	3.0	20	73	9	59	28	21	18	31	1.97
14862275--14862308	15	2.2	16	89	5	52	61	0	35	2	1.11
14862697--14863003	96	3.1	101	77	13	312	39	8	10	41	1.70
14862829--14863018	103	1.8	102	84	6	258	42	6	11	39	1.68
14864261--14864539	59	4.7	58	86	7	391	33	13	7	45	1.72
14864261--14864539	118	2.4	117	91	2	459	33	13	7	45	1.72
14864261--14864558	120	2.5	120	90	3	467	33	12	7	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14866680--14866724	23	2.0	23	86	8	65	68	4	4	22	1.25
14867024--14867048	9	2.8	9	100	0	50	0	8	8	84	0.79
14866904--14867142	125	1.9	128	93	5	423	27	16	12	43	1.84
14867042--14867226	96	2.0	93	84	3	244	30	18	14	36	1.91
14867165--14867469	40	7.5	41	90	5	451	36	23	18	21	1.95
14867202--14867469	81	3.3	81	96	1	475	36	23	18	22	1.95
14868671--14868724	19	3.1	18	79	10	58	5	12	0	81	0.85
14868704--14868748	23	2.0	23	86	8	65	8	17	0	73	1.08
14871454--14871500	15	3.1	15	84	3	67	51	4	23	21	1.65
14874669--14875076	57	6.9	57	84	10	477	33	12	7	46	1.69
14875171--14875209	20	1.9	20	94	5	69	87	5	2	5	0.75
14875708--14875761	25	2.2	24	83	6	63	40	18	5	35	1.74
14876070--14876123	22	2.4	24	73	17	62	68	5	3	22	1.26
14877970--14878041	29	2.4	30	79	6	76	40	6	0	52	1.28
14884067--14884126	29	2.1	29	96	0	111	36	11	10	41	1.75
14892645--14892692	13	3.8	12	83	10	51	75	2	2	20	1.02
14894267--14894351	43	2.0	42	97	2	161	32	18	14	34	1.91
14895736--14895795	21	3.0	20	73	9	59	28	21	18	31	1.97
14898521--14898553	15	2.1	16	88	5	50	66	0	30	3	1.06
14898836--14898892	22	2.7	21	78	10	62	26	1	7	64	1.28
14899066--14899253	103	1.8	103	84	7	256	41	7	12	38	1.71
14900480--14900524	4	11.2	4	90	0	54	20	0	6	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14903067--14903111	23	2.0	23	82	4	56	42	6	13	37	1.70
14913388--14913906	117	4.3	115	83	12	631	35	13	7	43	1.72
14913388--14913747	59	6.2	56	86	7	472	35	13	7	43	1.72
14913734--14913761	14	2.0	14	100	0	56	57	7	14	21	1.61
14913681--14913819	72	2.0	72	89	2	219	39	12	8	39	1.73
14913623--14913878	128	2.0	131	92	3	430	37	12	7	42	1.71
14913751--14913906	59	2.7	58	91	6	244	35	13	6	44	1.69
14913564--14913906	187	1.8	188	88	5	534	36	13	7	43	1.71
14913922--14913963	22	1.9	22	85	9	59	71	2	11	14	1.24
14913945--14914012	15	4.4	15	75	12	66	77	1	7	13	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113