genome.fa.s68.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  93  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19230695--19230742	20	2.4	20	85	0	60	14	37	27	20	1.92
19239059--19239097	14	2.8	14	84	0	51	10	30	2	56	1.46
19243335--19243549	47	4.4	47	78	8	200	29	12	20	38	1.88
19243331--19243549	96	2.2	96	81	7	255	30	11	19	37	1.88
19243743--19243823	20	3.7	21	72	20	60	75	3	0	20	0.96
19243771--19243824	12	4.9	11	78	15	58	77	3	0	18	0.91
19245702--19245775	32	2.3	32	85	0	94	37	22	13	25	1.91
19252156--19252213	22	2.6	23	81	10	66	31	5	5	58	1.42
19253089--19253233	17	9.2	16	67	20	76	22	3	2	71	1.14
19253180--19253234	28	1.9	29	85	10	78	14	9	1	74	1.14
19253152--19253233	18	4.4	19	73	21	59	17	4	2	75	1.08
19253248--19253555	118	2.6	116	79	10	325	45	7	12	35	1.70
19253437--19253634	70	3.0	66	81	9	215	45	8	9	36	1.66
19253249--19253662	59	6.7	59	74	11	267	44	7	13	34	1.72
19255489--19255679	47	3.9	49	75	10	149	32	12	17	37	1.88
19255854--19255936	21	4.0	21	72	21	68	73	1	0	25	0.90
19256644--19256695	23	2.2	24	86	3	70	63	3	1	30	1.23
19257837--19257904	33	2.1	31	83	5	82	36	22	11	29	1.89
19261504--19261556	17	3.3	16	80	12	56	71	0	0	28	0.86
19264178--19264275	5	19.2	5	73	10	65	19	3	4	73	1.13
19264267--19264300	15	2.2	16	89	5	52	26	2	2	67	1.19
19264354--19264411	22	2.6	23	81	10	66	31	5	5	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19265339--19265433	11	8.7	11	72	18	58	17	5	2	74	1.10
19265278--19265433	5	31.0	5	68	18	67	21	3	3	71	1.17
19265382--19265428	24	1.9	24	86	4	67	17	6	2	74	1.12
19265278--19265433	13	10.8	13	66	26	50	21	3	3	71	1.17
19265448--19265791	61	5.8	58	80	7	309	44	8	12	34	1.73
19276201--19276243	13	3.5	12	84	15	61	88	0	2	9	0.60
19276203--19276243	6	6.8	6	82	17	50	87	0	2	9	0.62
19276196--19276248	12	4.3	12	83	11	63	79	0	9	11	0.94
19277252--19277464	41	5.1	41	89	2	266	23	14	23	38	1.92
19277252--19277464	82	2.6	82	87	3	293	23	14	23	38	1.92
19277477--19277523	14	3.3	14	85	5	67	89	6	2	2	0.63
19277478--19277523	23	2.0	24	91	4	76	89	6	2	2	0.64
19277526--19277631	46	2.4	44	85	7	126	22	16	24	36	1.94
19277782--19277901	12	9.2	12	68	23	50	20	3	2	73	1.10
19277795--19277859	31	2.1	30	83	8	78	21	1	3	73	1.05
19277783--19277864	19	4.5	18	70	18	62	18	3	2	75	1.06
19277864--19277902	15	2.6	16	88	8	55	25	2	2	69	1.14
19277948--19277992	22	2.1	21	88	12	65	33	4	4	57	1.38
19278937--19279032	6	16.5	6	69	18	60	14	5	2	78	1.02
19278937--19278989	17	3.2	17	81	5	65	13	5	1	79	0.99
19278937--19279032	30	3.3	27	75	22	88	14	5	2	78	1.02
19278937--19278991	11	5.1	10	77	14	56	12	5	1	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19278932--19279037	17	6.1	18	75	15	64	15	6	1	76	1.08
19278932--19279037	52	2.0	52	82	13	130	15	6	1	76	1.08
19279048--19279458	59	6.7	60	81	11	399	43	6	12	36	1.69
19279187--19279276	29	3.1	29	63	28	73	43	7	14	34	1.74
19279047--19279458	60	6.8	60	81	10	428	43	6	12	36	1.70
19279178--19279267	28	3.1	28	62	12	65	40	5	15	38	1.71
19281143--19281167	8	3.1	8	100	0	50	60	0	0	40	0.97
19281534--19281579	24	1.9	25	86	8	69	69	0	0	30	0.89
19285724--19285777	16	3.3	16	77	10	56	72	0	0	27	0.85
19288905--19288930	13	2.0	13	100	0	52	69	0	7	23	1.14
19288978--19289002	12	2.1	12	100	0	50	84	0	0	16	0.63
19301249--19301430	47	3.8	47	81	6	195	30	11	19	37	1.88
19301247--19301430	96	1.9	97	84	3	246	30	11	19	38	1.87
19301642--19301684	17	2.5	17	84	0	50	81	4	0	13	0.84
19303584--19303657	32	2.3	32	85	0	94	37	22	13	25	1.91
19305307--19305359	17	3.3	16	80	12	56	71	0	0	28	0.86
19307997--19308038	20	2.1	20	82	8	50	14	2	4	78	1.01
19307968--19308068	28	3.6	26	76	15	78	17	2	3	75	1.09
19307981--19308075	15	6.1	15	69	21	61	18	3	3	74	1.08
19308129--19308186	22	2.6	23	81	10	66	31	5	5	58	1.42
19309058--19309211	9	16.4	9	68	18	59	21	3	3	72	1.14
19309108--19309173	32	2.0	34	82	5	82	21	3	1	74	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19309114--19309183	7	8.9	7	75	21	59	17	2	1	78	0.94
19309114--19309217	17	6.1	17	73	19	74	17	4	1	75	1.06
19309228--19309630	59	6.7	60	83	7	448	45	8	11	33	1.72
19309221--19309630	118	3.4	116	86	8	506	45	9	11	33	1.72
19318280--19318318	21	1.9	20	84	5	51	53	2	5	38	1.37
19319917--19319954	20	1.9	20	88	0	58	15	39	28	15	1.89
19333831--19334120	59	4.7	59	80	9	262	37	13	7	41	1.73
19333868--19334102	128	1.8	129	85	8	336	37	13	7	41	1.73
19334137--19334189	29	2.0	25	85	14	70	75	1	7	15	1.11
19334138--19334233	6	16.5	6	70	17	60	78	2	5	14	1.02
19334133--19334238	52	2.0	52	82	13	130	76	1	6	15	1.08
19334179--19334233	11	5.1	10	77	14	56	80	1	5	12	0.97
19334173--19334238	17	3.8	18	82	6	57	78	1	6	13	1.00
19334141--19334233	27	3.2	29	79	15	95	77	2	5	15	1.04
19335622--19335667	11	4.5	11	81	15	62	6	8	0	84	0.77
19335629--19335665	10	3.8	10	80	20	51	8	5	0	86	0.70
19335628--19335664	19	1.9	19	100	0	74	8	5	0	86	0.70
19335610--19335667	30	1.9	30	82	0	71	8	12	0	79	0.94
19346095--19346503	121	3.4	118	86	6	506	33	11	8	45	1.72
19346095--19346516	59	7.1	57	76	12	370	34	11	8	45	1.72
19346095--19346426	180	1.8	180	83	6	440	34	12	8	44	1.72
19346095--19346485	180	2.2	178	80	8	434	34	12	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19346507--19346612	17	6.1	17	72	15	67	75	1	5	16	1.08
19346511--19346563	29	2.0	25	85	14	70	75	1	7	15	1.11
19346513--19346606	11	8.3	11	73	15	68	76	2	4	17	1.04
19346507--19346594	18	5.2	16	69	18	54	76	2	5	15	1.08
19346508--19346583	28	2.7	27	80	13	75	77	2	6	13	1.06
19346507--19346612	52	2.0	52	81	13	121	75	1	5	16	1.08
19347535--19347604	22	3.3	21	75	24	67	60	4	4	31	1.36
19347652--19347676	11	2.3	11	100	0	50	72	0	0	28	0.86
19347667--19347791	5	23.8	5	71	18	62	75	3	2	19	1.05
19347656--19347790	61	2.2	61	79	12	152	75	2	2	19	1.04
19347653--19347791	15	9.2	15	68	22	71	74	2	2	20	1.05
19347656--19347790	6	22.3	6	71	18	54	75	2	2	19	1.04
19350411--19350464	16	3.3	16	76	10	56	27	0	0	72	0.85
19356515--19356539	8	3.1	8	100	0	50	40	0	0	60	0.97
19363243--19363305	32	2.0	32	83	0	81	26	12	20	39	1.89
19366497--19366548	16	3.2	16	75	10	52	26	0	0	73	0.84
19366900--19366924	8	3.1	8	100	0	50	40	0	0	60	0.97
19371102--19371126	8	3.1	8	100	0	50	40	0	0	60	0.97
19372808--19373279	61	7.7	59	79	11	386	36	12	7	43	1.70
19372809--19373299	59	8.1	59	77	13	348	36	12	7	43	1.70
19373294--19373392	25	3.8	25	74	23	71	77	2	6	14	1.04
19373295--19373391	6	16.7	6	71	17	62	78	2	5	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19373330--19373392	17	3.7	17	72	20	60	80	1	4	12	0.93
19373298--19373390	27	3.2	29	79	15	95	77	2	5	15	1.04
19373290--19373392	52	2.0	52	83	12	133	77	1	5	14	1.04
19373338--19373390	17	3.2	17	81	5	65	79	1	5	13	0.99
19374406--19374505	15	6.5	15	71	21	66	72	2	3	23	1.09
19374661--19374771	46	2.5	45	89	4	163	40	24	14	20	1.90
19374784--19374822	9	4.4	9	93	3	62	7	7	2	82	0.94
19374774--19374837	9	7.3	9	85	3	60	4	4	4	85	0.81
19374775--19374837	18	3.6	17	83	8	74	4	4	4	85	0.82
19374851--19375088	41	5.8	41	90	3	316	36	23	16	23	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113