genome.fa.s68.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  21  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7323728--7323942	116	1.8	118	80	13	264	22	0	29	47	1.55
7323728--7323902	58	3.0	59	74	11	157	23	0	29	46	1.57
7324230--7324282	15	3.5	15	80	14	56	33	1	0	64	1.05
7324327--7324396	37	1.9	35	83	11	88	71	2	1	24	1.08
7324536--7324576	21	1.9	22	90	5	66	19	26	34	19	1.96
7325363--7325395	8	4.1	8	88	11	50	9	0	3	87	0.63
7328857--7328889	2	16.5	2	93	0	57	54	45	0	0	0.99
7331158--7331192	18	1.9	18	88	0	52	42	8	0	48	1.33
7335048--7335087	21	1.9	21	89	0	62	80	5	10	5	1.02
7335048--7335096	21	2.4	21	80	10	57	79	4	12	4	1.01
7335662--7335693	16	1.9	16	93	6	55	87	3	6	3	0.73
7336482--7336516	16	2.2	16	89	0	52	88	8	2	0	0.61
7349680--7349724	21	2.2	21	84	11	58	48	0	6	44	1.29
7350358--7350404	21	2.2	21	85	7	60	27	6	6	59	1.46
7352961--7353000	20	2.0	20	85	0	53	60	12	2	25	1.45
7353084--7353176	42	2.2	42	84	3	116	43	19	8	29	1.80
7353157--7353315	38	4.0	40	74	9	128	40	16	11	31	1.85
7353436--7353541	43	2.5	43	80	6	126	40	16	7	34	1.77
7356930--7356968	15	2.6	16	84	12	55	10	10	5	74	1.21
7362496--7362557	17	3.7	18	73	18	53	27	4	1	66	1.21
7364676--7364709	18	1.9	18	88	5	52	35	11	11	41	1.78
7365241--7365497	106	2.4	105	83	1	307	31	12	13	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7365393--7365561	69	2.4	69	93	0	284	28	14	14	42	1.84
7365503--7365688	93	2.0	93	91	0	300	35	11	10	41	1.77
7366266--7366370	53	2.0	53	90	0	165	31	17	11	40	1.85
7368722--7368855	68	2.0	68	86	5	191	44	15	1	38	1.56
7369284--7369332	25	1.9	25	84	12	64	59	4	6	30	1.41
7369406--7369487	39	2.1	39	86	8	114	47	12	8	31	1.71
7374841--7374946	54	2.0	54	94	0	185	22	17	24	34	1.96
7384452--7384707	128	2.0	128	92	3	428	52	15	10	21	1.72
7386178--7386234	2	28.5	2	76	0	51	40	5	5	49	1.48
7387120--7387150	2	15.5	2	100	0	62	51	48	0	0	1.00
7387275--7387300	2	13.0	2	100	0	52	50	0	0	50	1.00
7390810--7390884	35	2.1	34	82	4	87	48	1	0	50	1.09
7390999--7391024	10	2.6	10	100	0	52	30	0	0	69	0.89
7392533--7392575	17	2.5	17	100	0	86	41	0	4	53	1.21
7393230--7393268	17	2.4	16	87	8	53	66	0	0	33	0.92
7396611--7396645	2	17.5	2	93	0	61	48	2	0	48	1.16
7396940--7397020	36	2.2	36	91	0	126	20	18	35	24	1.95
7400213--7400244	16	2.0	16	93	0	55	40	0	0	59	0.97
7401136--7401178	16	2.7	16	85	7	52	9	4	4	81	0.97
7401133--7401175	14	3.1	14	83	6	61	11	2	4	81	0.93
7411447--7411480	14	2.5	14	90	4	52	52	5	0	41	1.25
7416910--7416944	18	2.0	18	88	5	54	65	5	22	5	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7417162--7417256	39	2.5	37	90	8	156	44	2	2	51	1.25
7423091--7423124	2	17.0	2	100	0	68	50	0	0	50	1.00
7426069--7426107	21	1.9	21	84	5	53	53	12	2	30	1.52
7430060--7430089	14	2.1	15	93	6	53	70	0	0	30	0.88
7430125--7430163	19	2.1	19	85	4	53	30	0	23	46	1.53
7430918--7430961	23	1.9	24	90	9	74	50	4	4	40	1.43
7430906--7431241	172	2.0	170	82	10	407	47	4	8	39	1.54
7431249--7431336	44	2.0	44	84	8	117	61	7	10	20	1.53
7436447--7436474	2	14.0	2	100	0	56	50	0	0	50	1.00
7437678--7437717	18	2.2	19	86	4	55	37	5	7	50	1.53
7439360--7439394	13	2.6	13	90	4	52	0	25	8	65	1.21
7458231--7458374	71	2.0	70	93	4	245	47	18	17	16	1.82
7462381--7462423	3	14.3	3	100	0	86	32	0	0	67	0.91
7462751--7462794	18	2.5	17	88	7	61	40	2	0	56	1.11
7468616--7468641	2	13.0	2	100	0	52	50	0	0	50	1.00
7471193--7471217	2	12.5	2	100	0	50	52	0	0	48	1.00
7472398--7472426	3	9.7	3	100	0	58	68	0	31	0	0.89
7472596--7472622	2	13.5	2	100	0	54	51	0	0	48	1.00
7479230--7479254	2	12.5	2	100	0	50	52	0	0	48	1.00
7483716--7483752	14	2.6	14	100	0	74	54	16	18	10	1.71
7502680--7502731	13	3.9	13	73	11	52	51	0	1	46	1.12
7502767--7502968	80	2.5	81	80	6	232	41	8	5	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7504419--7504482	33	1.9	33	84	6	85	26	4	10	57	1.52
7504559--7504610	21	2.6	20	72	19	54	44	9	5	40	1.61
7509813--7509858	18	2.6	18	82	3	58	56	2	2	39	1.24
7509838--7509907	26	2.7	25	82	10	79	60	1	1	37	1.15
7509860--7509913	26	2.2	25	80	6	65	64	1	1	31	1.14
7509976--7510061	39	2.2	39	79	10	95	63	4	5	25	1.36
7510246--7510349	45	2.3	44	80	9	104	23	1	8	66	1.30
7510284--7510359	37	2.1	35	83	13	93	27	1	6	64	1.26
7510284--7510359	17	4.2	18	69	14	50	27	1	6	64	1.26
7510338--7510386	19	2.6	18	78	9	53	38	4	0	57	1.18
7510437--7510489	19	2.7	21	78	16	53	15	1	7	75	1.11
7510606--7510655	18	2.8	18	71	0	55	48	0	2	50	1.12
7510573--7510634	27	2.3	27	78	8	72	43	1	1	53	1.20
7535051--7535177	59	2.1	60	85	5	168	43	9	3	44	1.52
7535340--7535373	15	2.3	15	90	5	52	58	5	0	35	1.22
7537124--7537171	16	3.1	16	77	17	55	50	10	2	37	1.49
7537407--7537444	19	2.0	19	89	0	58	31	0	0	68	0.90
7537458--7537500	18	2.4	18	85	11	54	67	2	0	30	1.03
7538097--7538130	15	2.3	15	89	0	50	44	2	0	52	1.16
7538245--7538282	12	3.2	12	81	3	51	42	2	10	44	1.52
7555036--7555076	20	2.0	21	85	4	57	51	0	0	48	1.00
7568001--7568035	2	17.5	2	93	0	61	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7568001--7568051	12	4.2	12	92	0	75	39	0	9	50	1.35
7568021--7568054	4	8.5	4	93	0	50	32	0	17	50	1.47
7577446--7577482	15	2.4	15	86	4	56	51	5	2	40	1.39
7577529--7577565	19	1.9	19	94	0	65	62	8	5	24	1.44
7577649--7577676	13	2.2	13	100	0	56	42	21	0	35	1.53
7577855--7578201	173	2.0	173	85	1	471	33	17	13	35	1.89
7584537--7584574	16	2.4	16	91	4	60	31	0	0	68	0.90
7584678--7584729	15	3.3	15	76	7	50	76	7	1	13	1.07
7584697--7584743	18	2.4	21	82	13	64	76	8	2	12	1.09
7586180--7586241	29	2.1	29	84	0	79	27	11	8	53	1.64
7586188--7586251	29	2.2	30	85	2	85	28	9	7	54	1.60
7593518--7593566	22	2.2	22	92	0	80	36	4	20	38	1.72
7594142--7594192	15	3.3	15	74	15	50	50	1	0	47	1.12
7594193--7594231	19	2.1	19	85	9	53	48	0	2	48	1.15
7594364--7594400	20	1.9	18	89	10	56	54	0	0	45	1.00
7599340--7599479	68	2.0	69	83	4	174	32	15	5	45	1.70
7604076--7604105	12	2.6	11	90	10	51	0	13	0	86	0.57
7606113--7606155	21	2.0	21	100	0	86	65	9	9	16	1.47
7608253--7608285	11	3.1	11	86	8	50	27	12	0	60	1.32
7608518--7608551	18	1.9	17	94	5	59	47	0	0	52	1.00
7609632--7609685	24	2.3	23	78	9	54	37	7	3	51	1.48
7609642--7609691	24	2.1	24	88	0	73	38	8	0	54	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7609873--7609915	20	2.2	20	87	8	61	32	0	4	62	1.15
7623099--7623161	29	2.3	28	83	8	76	46	1	1	50	1.20
7623866--7623921	24	2.3	24	82	14	62	37	0	5	57	1.22
7626361--7626390	2	15.0	2	92	0	51	50	0	3	46	1.18
7627179--7627242	32	2.0	33	84	9	87	40	4	4	50	1.44
7631120--7631334	106	2.0	106	98	0	412	43	8	8	38	1.67
7631739--7631835	29	3.6	27	71	19	78	46	3	1	49	1.24
7632641--7632736	49	2.0	48	83	6	122	48	0	3	47	1.17
7633730--7633770	12	3.3	12	86	6	64	19	0	9	70	1.14
7633729--7633771	13	3.4	13	78	18	54	18	0	9	72	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113