genome.fa.s68.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  2  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338374--338422	3	16.3	3	91	0	71	65	6	0	28	1.16
338375--338418	15	2.9	15	96	0	79	68	6	0	25	1.14
338374--338422	18	2.7	18	93	0	89	65	6	0	28	1.16
360603--360632	10	3.1	10	95	4	53	36	0	0	63	0.95
360798--360841	22	2.0	23	81	4	54	45	9	2	43	1.48
363467--363491	13	1.9	13	100	0	50	32	4	0	64	1.12
363514--363560	23	2.0	23	83	0	58	46	8	0	44	1.33
363714--363747	2	17.0	2	93	0	50	44	0	5	50	1.26
365654--365685	4	8.0	4	92	0	55	28	0	25	46	1.53
366423--366817	218	1.8	218	99	0	781	32	16	17	33	1.93
376990--377156	89	1.9	88	82	5	210	43	11	2	42	1.56
383230--383270	2	20.5	2	89	0	64	51	4	0	43	1.23
383786--383849	21	3.0	20	77	8	56	35	3	0	60	1.12
388719--389038	160	2.0	157	94	1	559	27	15	18	38	1.91
393515--393563	25	1.9	25	87	4	71	38	10	8	42	1.68
393453--393933	197	2.5	189	83	7	562	37	8	7	46	1.63
393961--393989	11	2.5	12	88	11	51	13	0	0	86	0.58
394007--394084	11	7.1	10	74	20	50	74	8	0	16	1.06
394350--394376	13	2.1	13	100	0	54	0	14	0	85	0.61
395021--395067	24	1.9	24	82	4	58	6	6	4	82	0.92
395133--395227	43	2.2	43	82	1	109	45	14	14	25	1.83
395238--395466	85	2.7	85	81	6	254	46	16	10	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395228--395469	43	5.8	43	79	5	264	45	16	11	26	1.81
396077--396157	22	3.8	20	75	14	72	39	14	11	34	1.82
397424--397471	18	2.8	17	75	18	55	2	16	0	81	0.79
397435--397464	15	1.9	16	93	6	53	0	23	0	76	0.78
401664--402178	196	2.7	194	83	5	607	35	8	7	48	1.62
402244--402305	28	2.2	28	83	13	74	72	6	1	19	1.15
402724--402782	31	1.9	31	82	6	75	50	25	8	15	1.71
412687--412714	4	7.0	4	100	0	56	75	0	25	0	0.81
417027--417065	2	19.5	2	100	0	78	48	0	0	51	1.00
417795--417863	34	2.0	34	88	0	102	49	4	39	7	1.50
421166--421241	33	2.4	30	82	10	89	51	2	0	46	1.15
421166--421245	31	2.5	33	86	8	103	51	2	0	46	1.14
422257--422349	38	2.5	37	85	5	125	44	6	0	49	1.28
422273--422336	19	3.4	19	66	23	53	45	6	0	48	1.27
429330--429355	13	2.0	13	100	0	52	38	0	0	61	0.96
429407--429453	20	2.3	21	82	17	55	59	0	0	40	0.97
444094--444161	35	1.9	35	87	0	100	32	11	16	39	1.84
447359--447668	80	3.9	78	88	2	413	43	24	8	23	1.82
458228--458266	2	19.5	2	100	0	78	48	0	0	51	1.00
464627--464652	7	3.7	7	100	0	52	57	0	0	42	0.98
469928--469979	24	2.1	24	82	10	61	50	3	0	46	1.20
469939--469989	24	2.0	25	85	14	70	45	1	0	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469998--470072	36	2.2	34	79	11	82	42	0	0	57	0.98
470873--470905	15	2.1	16	88	5	50	42	3	0	54	1.15
471632--471656	12	2.1	12	100	0	50	0	8	0	92	0.40
474135--474189	27	2.1	26	83	10	67	58	0	0	41	0.98
480570--480605	12	2.8	13	83	8	56	58	0	2	38	1.13
483907--483947	10	4.0	10	90	3	55	39	0	0	60	0.96
483907--483961	10	4.8	11	77	20	51	38	0	0	61	0.96
490303--490365	32	2.0	32	90	0	99	36	12	26	23	1.91
497791--497847	24	2.4	24	85	2	80	31	17	1	49	1.57
501018--501052	17	2.1	17	100	0	70	22	5	11	60	1.52
506180--506225	23	1.9	25	86	8	69	56	15	10	17	1.67
506511--506556	23	1.9	25	86	8	69	15	10	17	56	1.67
509063--509105	19	2.4	18	80	7	52	53	2	9	34	1.46
509613--509669	23	2.5	22	75	8	60	54	1	1	42	1.21
509636--509700	34	1.9	33	84	9	87	53	4	3	38	1.37
512204--512321	59	2.0	59	100	0	236	27	27	15	30	1.96
512263--512476	112	1.9	112	97	0	401	22	24	20	31	1.98
516778--516944	81	2.1	81	100	0	334	32	15	21	29	1.94
517681--517725	23	1.9	23	86	4	63	53	0	4	42	1.21
517700--517744	17	2.6	18	79	13	58	48	2	0	48	1.13
524603--524678	31	2.4	31	84	2	98	27	19	17	35	1.94
546249--546288	15	2.7	15	84	0	53	27	0	20	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546343--546377	14	2.5	14	95	0	61	17	0	31	51	1.45
546502--546572	3	23.3	3	91	2	115	30	0	2	66	1.06
546670--546730	3	20.7	3	93	3	106	31	1	0	67	1.01
548010--548058	22	2.2	23	82	10	57	4	2	10	83	0.85
548800--548884	22	3.9	22	82	3	91	31	16	21	30	1.95
548800--548884	44	1.9	44	83	4	109	31	16	21	30	1.95
548698--548983	154	1.9	154	83	1	376	38	17	20	23	1.93
549174--549236	22	2.9	22	83	9	92	30	9	22	38	1.86
548853--549210	110	3.2	108	75	9	319	39	15	20	25	1.91
549061--549471	132	3.1	132	79	3	391	39	14	18	26	1.90
549304--549375	22	3.2	22	76	2	72	38	12	13	34	1.83
549434--549485	22	2.3	23	80	6	61	38	21	15	25	1.92
549325--549592	110	2.4	110	85	3	335	42	16	16	25	1.87
549658--549703	22	2.0	23	83	4	58	28	21	21	28	1.99
552362--552389	8	3.5	8	100	0	56	10	0	0	89	0.49
552349--552391	21	2.0	21	82	8	52	9	6	0	83	0.80
556573--556603	15	2.1	15	94	5	55	6	9	0	83	0.79
557154--557204	26	2.0	26	84	0	66	64	1	3	29	1.22
558346--558386	15	2.7	15	88	0	64	21	0	21	56	1.43
558345--558395	22	2.3	21	75	15	50	23	0	23	52	1.47
558625--558676	3	17.3	3	84	7	70	28	0	1	69	0.99
558973--559011	18	2.2	18	90	0	60	79	2	2	15	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560068--560135	22	3.2	20	75	8	55	10	4	8	76	1.14
561179--561233	24	2.3	24	96	0	101	38	0	1	60	1.08
561179--561241	24	2.6	24	89	0	72	38	1	3	57	1.24
574465--574489	13	1.9	13	100	0	50	36	0	8	56	1.29
586881--586906	5	5.2	5	100	0	52	0	23	0	76	0.78
597063--597097	9	4.1	9	89	10	56	11	8	11	68	1.39
597063--597097	17	2.1	18	89	10	56	11	8	11	68	1.39
598048--598073	2	13.0	2	100	0	52	50	0	0	50	1.00
611511--611604	37	2.5	37	98	0	179	47	3	30	18	1.64
613485--613524	21	1.9	21	84	0	53	70	2	10	17	1.27
614493--614529	11	3.4	11	96	0	65	35	2	0	62	1.10
614493--614536	22	2.0	22	86	0	61	40	2	0	56	1.11
618604--618637	3	11.3	3	100	0	68	35	0	32	32	1.58
619224--619256	4	8.5	4	93	6	59	51	0	0	48	1.00
619798--619834	15	2.5	15	86	0	56	37	0	0	62	0.96
620951--620980	2	15.0	2	92	0	51	53	0	0	46	1.00
633080--633104	2	12.5	2	100	0	50	52	0	0	48	1.00
633548--633577	2	15.0	2	100	0	60	50	0	0	50	1.00
638781--638825	21	2.1	21	95	0	81	28	26	2	42	1.67
652280--652318	18	2.2	18	85	0	51	25	10	12	51	1.71
659500--659531	6	5.3	6	92	0	55	0	3	34	62	1.11
659496--659531	18	2.1	17	94	5	63	0	5	33	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670997--671073	37	2.1	38	95	2	138	33	11	23	31	1.91
672219--672255	9	3.8	10	83	16	51	48	0	0	51	1.00
672206--672262	26	2.2	25	84	9	71	43	1	0	54	1.10
673882--673929	23	2.2	21	82	10	60	60	2	2	35	1.20
674560--674765	104	2.0	105	92	1	344	33	21	13	32	1.91
683962--683992	16	1.9	16	100	0	62	45	19	9	25	1.81
687674--687719	23	2.0	23	86	0	65	52	2	4	41	1.33
687691--687823	30	4.4	30	84	3	169	49	2	6	42	1.39
687691--687823	60	2.2	60	93	0	221	49	2	6	42	1.39
694943--694967	13	1.9	13	100	0	50	32	16	24	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113