genome.fa.s68.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  96  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19543559--19543588	10	3.1	10	95	4	53	63	0	0	36	0.95
19543558--19543601	19	2.3	20	80	11	56	63	0	0	36	0.95
19554604--19554630	2	13.5	2	100	0	54	48	0	0	51	1.00
19557001--19557425	211	2.0	211	95	0	762	33	12	17	36	1.88
19557771--19557820	17	2.6	19	78	18	59	18	4	4	74	1.14
19557771--19557876	7	16.5	6	69	21	56	17	3	3	74	1.12
19557856--19557902	11	4.1	11	84	10	58	29	4	2	63	1.25
19557850--19557976	24	5.7	23	68	18	90	28	6	3	62	1.35
19558012--19558059	16	3.0	15	77	14	51	20	2	4	72	1.11
19558860--19558919	15	3.8	15	75	16	50	18	3	0	78	0.89
19558882--19558928	9	5.3	9	80	12	53	29	2	0	68	1.02
19559118--19559334	117	1.8	118	91	4	359	41	6	13	38	1.70
19559128--19559334	58	3.6	58	83	4	274	40	6	13	39	1.70
19564819--19564848	15	2.1	15	93	6	53	50	6	36	6	1.55
19569729--19569762	17	1.9	18	94	5	61	85	0	2	11	0.71
19570745--19571003	41	6.1	42	89	6	384	25	16	20	37	1.93
19570745--19571003	83	3.1	83	89	5	396	25	16	20	37	1.93
19571011--19571046	8	4.4	8	86	6	54	88	0	0	11	0.50
19571015--19571047	10	3.3	10	91	8	50	90	0	0	9	0.44
19571011--19571047	17	2.1	18	95	5	67	89	0	0	10	0.49
19571059--19571157	43	2.3	43	85	0	144	24	12	23	40	1.88
19571341--19571444	6	17.3	6	69	15	72	20	2	1	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19571342--19571442	11	9.1	10	71	19	51	18	2	1	76	1.01
19571341--19571465	17	6.9	17	72	15	83	20	3	2	73	1.08
19571378--19571419	19	2.2	19	80	19	52	21	2	2	73	1.06
19571956--19571992	19	1.9	19	89	10	58	24	8	29	37	1.84
19572152--19572190	16	2.3	18	86	8	55	58	0	38	2	1.12
19572475--19572567	6	15.0	6	73	14	64	18	2	3	76	1.02
19572470--19572581	34	3.1	35	80	12	120	17	2	2	76	1.02
19572526--19572576	9	5.9	9	73	17	54	17	1	0	80	0.81
19572609--19572700	30	3.1	30	68	12	80	41	2	14	42	1.57
19572601--19572757	60	2.7	58	84	5	208	43	3	13	38	1.62
19576641--19576819	92	1.9	92	91	0	295	54	5	4	35	1.44
19577672--19577705	16	2.1	16	88	0	50	47	0	0	52	1.00
19578521--19578560	11	3.8	10	86	6	53	62	0	2	35	1.09
19578521--19578560	21	1.9	21	89	0	62	62	0	2	35	1.09
19580124--19580170	23	2.0	23	83	0	58	48	0	0	51	1.00
19581034--19581074	20	2.0	22	90	9	68	36	0	4	58	1.20
19582862--19582945	35	2.4	34	83	13	116	38	10	9	41	1.73
19583638--19583671	17	2.0	17	94	0	59	23	8	23	44	1.81
19586630--19586659	13	2.3	13	100	0	60	26	0	0	73	0.84
19586663--19586698	3	12.0	3	93	0	63	33	0	2	63	1.08
19586718--19586788	21	3.4	21	77	12	83	26	5	1	66	1.22
19587490--19587604	3	40.7	3	72	19	72	25	0	2	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19587490--19587604	8	13.6	9	73	22	72	25	0	2	71	1.05
19587482--19587552	23	3.0	23	83	8	81	25	2	1	70	1.09
19587489--19587604	10	11.6	10	77	13	57	25	0	2	71	1.04
19587477--19587604	29	4.4	29	74	22	101	23	1	2	72	1.05
19587486--19587610	25	5.2	24	73	20	72	24	1	2	71	1.07
19587568--19587611	5	8.8	5	94	0	79	18	2	0	79	0.83
19591012--19591042	15	2.1	15	93	0	53	19	22	6	51	1.69
19599447--19599634	43	4.4	43	83	2	236	22	15	19	42	1.89
19599477--19599632	84	1.9	84	87	0	231	23	16	20	39	1.91
19599871--19600007	3	44.7	3	73	16	86	27	4	1	67	1.18
19600739--19600798	31	2.0	29	87	6	84	21	5	0	73	1.02
19600753--19600848	18	5.4	17	75	16	70	25	3	2	69	1.13
19600816--19600849	5	6.4	5	93	6	50	17	0	0	82	0.67
19600816--19600850	11	3.2	11	88	11	54	17	0	0	82	0.66
19600819--19600850	6	5.7	6	89	10	50	15	0	0	84	0.63
19603795--19603870	12	6.9	11	78	16	70	32	0	1	65	1.01
19603818--19603869	6	8.7	6	91	8	88	32	0	0	67	0.91
19603806--19603869	24	2.7	24	90	9	96	32	0	1	65	1.02
19604202--19604294	10	8.6	11	75	10	77	74	5	1	19	1.08
19604211--19604267	5	11.2	5	84	3	78	77	3	1	17	1.00
19604941--19604975	17	2.1	17	88	0	52	37	5	5	51	1.50
19613382--19613509	65	2.0	65	86	4	179	45	5	10	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19615402--19615440	19	2.0	21	85	10	55	64	12	0	23	1.28
19615610--19615646	20	1.9	19	89	10	58	29	0	0	70	0.88
19616402--19616444	21	2.0	21	86	0	59	32	11	0	55	1.36
19617525--19617584	24	2.5	24	83	5	68	31	0	0	68	0.90
19618691--19618735	23	1.9	23	86	4	63	53	2	6	37	1.40
19633272--19633301	12	2.5	12	88	0	51	16	0	40	43	1.48
19637191--19637257	18	3.6	18	74	18	64	47	0	1	50	1.10
19637203--19637349	21	7.2	21	71	11	126	47	3	2	46	1.30
19637386--19637634	11	22.9	11	69	15	108	41	1	2	54	1.23
19637359--19637439	31	2.7	30	83	12	105	34	3	1	60	1.22
19637429--19637486	30	1.9	30	86	6	82	41	3	1	53	1.28
19637469--19637554	29	3.3	27	75	15	65	46	1	2	50	1.21
19637416--19637554	55	2.6	54	78	7	160	43	1	2	52	1.22
19637558--19637614	19	2.9	21	75	17	59	45	1	0	52	1.11
19637676--19637727	22	2.4	22	80	0	59	44	1	5	48	1.38
19637713--19637823	28	3.9	29	80	12	140	45	0	4	50	1.22
19637724--19637823	29	3.5	28	81	18	127	46	0	5	49	1.24
19637811--19637848	19	2.0	19	85	10	51	31	2	0	65	1.06
19638185--19638216	2	16.5	2	93	6	57	46	0	0	53	1.00
19652640--19652669	15	2.1	14	93	6	51	20	0	10	70	1.16
19652726--19652763	18	2.1	18	90	0	58	34	7	10	47	1.67
19655930--19655983	25	2.2	25	93	6	92	50	3	27	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19656670--19656721	21	2.5	21	90	6	79	50	0	0	50	1.00
19656670--19656721	22	2.5	22	93	6	90	50	0	0	50	1.00
19659639--19659763	18	6.9	18	73	13	96	28	4	35	32	1.76
19659717--19659759	21	2.0	21	90	0	68	30	2	41	25	1.68
19663546--19663594	25	1.9	26	91	4	82	40	10	2	46	1.49
19663820--19663856	20	1.9	20	88	5	58	56	5	2	35	1.36
19664090--19664179	40	2.3	40	84	5	112	22	60	1	16	1.43
19670534--19670740	85	2.4	86	81	4	249	29	15	14	39	1.88
19670534--19670742	43	4.9	43	78	3	215	30	16	14	38	1.89
19672095--19672145	25	2.0	25	81	7	59	13	13	0	72	1.12
19672154--19672196	4	12.0	4	90	9	51	25	0	0	74	0.82
19672154--19672196	14	3.0	16	75	25	51	25	0	0	74	0.82
19672222--19672266	21	2.1	21	88	8	65	37	6	8	46	1.61
19672401--19672693	134	2.2	133	88	1	444	42	14	8	34	1.77
19672490--19672599	37	2.9	38	82	8	136	43	17	9	30	1.80
19674029--19674100	31	2.3	31	80	4	83	34	12	9	43	1.76
19674689--19674832	57	2.5	58	84	6	177	39	9	6	43	1.65
19674689--19674853	58	2.9	57	78	7	172	40	10	7	42	1.67
19675235--19675311	33	2.2	33	84	6	91	19	1	20	58	1.47
19675144--19675291	59	2.5	58	78	6	172	19	4	18	57	1.56
19675307--19675390	45	1.9	44	83	13	111	17	0	16	65	1.27
19678494--19678525	11	3.0	11	95	4	57	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19678495--19678527	10	3.2	10	95	4	57	69	0	0	30	0.88
19678916--19678960	24	1.9	23	81	4	54	48	2	6	42	1.41
19681674--19681711	18	2.1	18	90	9	60	50	7	0	42	1.31
19682336--19682360	5	5.0	5	100	0	50	40	0	0	60	0.97
19683336--19683361	2	13.0	2	100	0	52	0	50	0	50	1.00
19687564--19687618	18	3.2	18	73	19	53	36	0	1	61	1.06
19687605--19687656	22	2.5	22	93	6	90	50	0	0	50	1.00
19697209--19697251	18	2.5	17	82	14	52	30	18	13	37	1.90
19700863--19700925	27	2.3	27	100	0	126	28	19	3	49	1.63
19701605--19701638	17	2.1	16	89	10	52	73	0	17	8	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113