genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  100  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33231807--33231831	11	2.3	11	100	0	50	0	8	0	92	0.40
33236137--33236199	29	2.3	27	78	10	65	22	15	9	52	1.72
33236387--33236427	12	3.4	12	87	9	57	36	7	0	56	1.27
33242949--33243282	167	2.0	167	98	0	641	39	15	17	26	1.90
33244071--33245071	502	2.0	495	96	2	1844	53	6	11	28	1.62
33244722--33245496	400	2.0	380	91	7	1270	53	8	11	26	1.64
33245209--33245254	19	2.4	19	96	0	83	63	2	4	30	1.26
33245217--33245258	11	4.1	11	79	17	54	57	2	7	33	1.39
33247123--33247337	44	4.8	45	75	2	229	26	22	20	31	1.98
33247123--33247337	89	2.4	89	95	0	378	26	22	20	31	1.98
33251364--33251403	19	2.0	20	85	4	55	47	7	20	25	1.75
33251436--33251461	13	2.0	13	100	0	52	46	15	7	30	1.74
33252414--33252796	193	2.0	193	87	3	556	32	18	19	28	1.96
33253232--33253658	177	2.4	177	81	4	459	31	16	23	28	1.96
33253194--33253890	133	5.2	133	74	6	455	31	16	23	28	1.96
33253387--33253724	89	3.8	87	80	7	324	30	17	23	28	1.97
33253391--33253724	177	1.9	177	82	4	424	31	17	23	27	1.97
33253193--33253894	310	2.3	312	92	1	1169	31	16	23	28	1.96
33253687--33253895	90	2.3	89	84	4	278	30	19	22	27	1.98
33253194--33253889	44	15.7	44	72	7	408	31	16	23	28	1.96
33255484--33255524	12	3.4	12	87	9	57	36	7	0	56	1.27
33260877--33260991	38	3.0	38	97	0	221	43	5	26	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33267710--33267744	18	2.0	18	88	5	54	54	0	8	37	1.31
33267779--33267818	20	1.9	22	90	10	66	60	0	0	40	0.97
33268080--33268156	10	8.1	9	71	24	52	31	1	5	62	1.25
33268248--33268293	23	2.0	23	88	12	69	28	8	4	58	1.47
33268279--33268321	18	2.3	19	88	4	61	32	2	4	60	1.30
33272969--33273028	30	2.0	30	96	0	111	56	15	3	25	1.54
33281701--33281735	17	2.1	17	94	0	61	11	85	0	2	0.69
33283207--33283364	79	2.0	79	100	0	316	41	20	10	27	1.84
33291058--33291197	46	3.0	46	97	0	262	29	27	8	34	1.87
33291345--33291442	31	3.2	31	70	21	107	47	19	1	31	1.56
33291320--33291447	60	2.1	60	100	0	256	49	19	1	29	1.58
33291320--33291411	29	3.1	29	69	22	91	50	18	2	29	1.59
33298492--33298549	17	3.4	17	75	17	57	44	5	0	50	1.24
33299959--33300001	13	3.5	13	78	18	56	48	11	0	39	1.40
33299959--33300008	23	2.2	23	92	3	84	50	10	0	40	1.36
33309906--33309948	13	3.5	13	75	18	56	51	13	0	34	1.42
33309908--33309957	23	2.2	23	100	0	100	54	12	0	34	1.38
33309908--33309963	23	2.5	23	91	2	69	55	10	0	33	1.35
33311241--33311275	9	3.9	9	84	0	52	42	0	2	54	1.15
33318864--33318906	21	2.0	21	82	8	52	23	32	16	27	1.96
33321935--33321978	20	2.4	18	85	14	56	47	34	6	11	1.66
33322275--33322331	20	2.8	20	74	12	62	7	12	1	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33322796--33322836	3	13.7	3	84	0	55	34	4	0	60	1.18
33324800--33324862	29	2.2	28	83	8	74	47	11	17	23	1.79
33325679--33325719	20	2.1	19	90	4	64	53	0	0	46	1.00
33328187--33328217	3	10.3	3	100	0	62	67	0	32	0	0.91
33328778--33328830	14	3.7	14	74	2	52	37	39	0	22	1.54
33328778--33328832	21	2.6	21	91	2	83	38	40	0	21	1.54
33328797--33328890	21	4.7	21	69	20	60	42	34	0	23	1.54
33328876--33328925	21	2.4	21	80	6	57	38	32	2	28	1.68
33329232--33329327	40	2.4	39	84	5	120	27	28	20	23	1.99
33329258--33329557	115	2.6	114	83	1	375	28	23	18	29	1.98
33329488--33329771	40	7.3	40	69	9	183	27	21	20	30	1.98
33329373--33329748	153	2.4	154	84	3	472	28	21	19	30	1.98
33330939--33330988	27	1.9	27	84	8	68	52	2	2	44	1.24
33350707--33350851	72	2.0	73	98	1	283	45	4	2	47	1.36
33366082--33366113	15	2.1	16	94	5	57	28	0	0	71	0.86
33367017--33367055	20	2.0	20	89	0	60	48	10	2	38	1.51
33367110--33367156	15	3.0	15	82	11	58	51	2	0	46	1.13
33374426--33374460	18	1.9	18	88	0	52	31	8	34	25	1.86
33375111--33375135	7	3.6	7	100	0	50	60	12	0	28	1.32
33376741--33376797	29	2.0	29	89	6	89	63	0	0	36	0.95
33376820--33376903	29	3.1	29	62	22	74	41	0	28	29	1.56
33376798--33376909	51	2.2	51	95	0	197	41	0	29	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33376881--33376928	22	2.2	22	100	0	96	39	0	31	29	1.57
33377416--33377446	16	1.9	16	100	0	62	45	0	0	54	0.99
33380509--33380551	21	2.0	21	82	8	52	23	32	16	27	1.96
33385399--33385563	84	1.9	86	79	9	187	48	10	6	33	1.64
33390372--33390398	13	2.1	13	100	0	54	62	14	7	14	1.51
33391253--33391281	15	1.9	15	100	0	58	41	20	6	31	1.79
33395480--33395534	27	2.0	27	100	0	110	32	21	14	30	1.93
33398849--33398903	27	2.0	27	100	0	110	32	18	14	34	1.91
33400599--33400640	18	2.3	18	87	0	57	28	7	9	54	1.59
33403280--33403322	21	2.0	21	82	8	52	23	32	16	27	1.96
33408240--33408280	20	2.1	19	95	4	73	51	0	0	48	1.00
33408753--33408782	15	2.0	15	93	0	51	13	23	13	50	1.77
33409187--33409263	29	2.6	29	83	4	91	46	14	14	24	1.81
33411629--33411686	19	3.2	19	80	14	68	43	5	8	43	1.57
33411710--33411745	18	1.9	19	88	5	56	33	13	13	38	1.85
33411934--33411974	19	2.2	19	86	8	57	36	12	12	39	1.80
33412139--33412163	9	2.8	9	100	0	50	56	12	12	20	1.67
33412284--33412349	13	5.1	13	80	12	82	0	19	0	80	0.72
33412284--33412349	25	2.5	26	88	11	91	0	19	0	80	0.72
33412451--33412484	14	2.4	14	90	0	50	5	17	17	58	1.57
33412614--33412703	7	12.4	7	72	10	65	1	25	0	73	0.90
33412628--33412717	46	2.0	46	89	8	139	1	27	0	71	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33412614--33412718	20	5.0	20	73	20	81	0	26	0	72	0.91
33412614--33412706	14	7.1	13	77	16	77	1	25	0	73	0.90
33412614--33412719	21	4.9	20	76	21	92	0	27	0	71	0.92
33412819--33412883	32	2.1	29	88	8	94	0	13	4	81	0.84
33412813--33412883	30	2.4	29	84	13	92	0	14	4	81	0.83
33412821--33412882	19	3.3	19	84	8	65	0	14	4	80	0.87
33412839--33412887	19	2.5	19	86	3	71	0	12	6	81	0.86
33413402--33413563	30	5.4	31	76	10	99	41	5	18	33	1.74
33413384--33413554	59	2.9	62	72	11	153	40	5	20	33	1.76
33413423--33413552	30	4.4	29	77	13	104	41	4	19	34	1.72
33413444--33413563	30	4.0	30	79	4	118	41	5	20	32	1.76
33413859--33414493	77	7.9	87	82	9	466	36	19	16	27	1.93
33413937--33414507	77	7.2	78	86	7	696	37	19	16	26	1.93
33413725--33414507	314	2.4	315	83	10	923	36	19	16	27	1.93
33413956--33414507	157	3.5	157	86	7	757	35	19	17	27	1.94
33415364--33415434	1	71.0	1	71	0	52	0	2	11	85	0.69
33415376--33415431	6	9.7	6	94	5	98	0	0	14	85	0.59
33415376--33415431	17	3.2	18	95	5	98	0	0	14	85	0.59
33415365--33415431	18	3.9	17	90	5	100	0	2	11	85	0.72
33415975--33416116	30	4.8	30	74	14	107	42	4	19	33	1.70
33420199--33420225	14	1.9	14	100	0	54	70	7	0	22	1.12
33425809--33425929	40	3.0	40	80	11	115	19	32	27	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33425934--33426000	30	2.3	29	85	10	91	49	19	13	17	1.80
33426823--33426865	21	2.0	21	82	8	52	23	32	16	27	1.96
33437563--33437641	12	7.5	11	75	21	64	59	0	1	39	1.06
33437552--33437653	38	2.5	40	89	6	154	59	0	0	39	1.04
33438917--33438973	28	2.0	28	86	0	78	42	7	17	33	1.76
33450466--33450505	12	3.6	12	74	19	50	70	0	17	12	1.18
33450456--33450504	21	2.3	21	96	3	89	71	0	20	8	1.11
33450865--33450918	27	2.0	27	92	0	90	29	1	0	68	1.00
33450870--33450929	26	2.3	27	82	2	68	26	1	5	66	1.21
33452398--33452431	18	1.9	17	88	5	50	47	44	0	8	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131