genome.fa.s9.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  107  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35507899--35508238	43	8.0	43	82	2	348	26	13	28	31	1.94
35518671--35518724	25	2.2	25	82	0	63	25	11	44	18	1.83
35518840--35518888	24	2.2	22	85	10	64	30	4	38	26	1.75
35519186--35519301	40	2.9	40	93	1	196	9	37	4	49	1.55
35519946--35520424	27	17.7	27	84	5	472	41	17	15	25	1.89
35520624--35520673	26	1.9	26	83	0	64	20	22	20	38	1.94
35534784--35534847	24	2.6	24	85	2	83	7	31	6	54	1.54
35545910--35545987	28	2.8	28	92	0	138	28	32	21	17	1.96
35549342--35549386	19	2.4	19	88	7	65	62	4	8	24	1.43
35549341--35549387	20	2.4	20	83	13	62	63	4	8	23	1.40
35550439--35550493	23	2.4	23	76	14	60	58	3	27	10	1.49
35550452--35550495	21	2.2	21	84	8	56	61	2	25	11	1.41
35555516--35555587	26	2.7	27	82	2	83	30	18	25	26	1.98
35556371--35556465	25	3.8	25	72	10	88	28	23	18	29	1.98
35556615--35556664	26	2.0	25	84	7	66	40	6	16	38	1.73
35559051--35559100	22	2.4	21	80	9	57	20	18	20	42	1.90
35559085--35559162	20	3.7	20	68	15	57	11	20	25	42	1.86
35559087--35559187	45	2.2	45	92	0	166	10	20	25	42	1.85
35559126--35559198	25	3.2	23	77	21	82	12	17	24	45	1.83
35559153--35559210	25	2.3	25	85	11	75	12	20	22	44	1.84
35560276--35560370	28	3.4	28	77	2	102	34	23	17	24	1.96
35560704--35561063	27	13.3	27	80	8	324	21	18	16	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35568660--35568759	52	1.9	52	87	0	146	26	20	23	31	1.98
35568949--35568986	19	2.0	19	85	10	51	34	2	21	42	1.67
35570784--35570822	19	2.1	19	85	0	51	53	2	20	23	1.57
35571280--35571322	22	2.0	23	86	9	63	51	0	11	37	1.39
35571461--35571494	18	1.9	18	88	5	52	58	5	2	32	1.37
35572681--35572705	13	1.9	13	100	0	50	0	12	0	88	0.53
35574644--35574689	22	2.1	21	84	8	56	43	0	4	52	1.21
35586608--35586796	40	4.8	40	78	3	184	38	16	29	15	1.90
35586633--35586779	79	1.9	80	85	4	208	37	15	29	17	1.90
35591038--35591074	19	1.9	19	94	0	65	48	13	8	29	1.71
35592813--35592893	18	4.5	18	73	17	78	6	19	1	72	1.12
35592814--35592893	36	2.2	36	82	8	92	6	20	1	72	1.13
35592813--35592875	6	10.2	6	72	6	54	4	19	1	74	1.08
35594626--35594711	45	1.9	44	88	2	127	30	18	12	38	1.88
35615692--35615716	11	2.3	11	100	0	50	40	24	8	28	1.83
35623476--35623516	3	13.7	3	100	0	82	68	0	0	31	0.90
35625000--35625083	43	1.9	45	90	4	136	50	1	19	29	1.55
35625852--35625876	13	1.9	13	100	0	50	64	0	0	36	0.94
35632827--35632890	29	2.2	30	80	11	78	53	6	10	29	1.60
35634150--35634210	21	3.0	20	79	13	70	63	8	6	21	1.44
35634446--35634485	19	2.2	19	86	4	55	55	0	5	40	1.22
35641370--35641454	30	2.8	29	84	7	107	36	5	40	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35649052--35649171	51	2.4	51	81	2	134	28	22	20	28	1.99
35649451--35649639	44	4.3	43	69	14	125	23	29	17	29	1.97
35649158--35650048	132	6.8	132	90	2	1274	25	25	19	30	1.98
35656740--35656771	15	2.1	15	100	0	64	18	15	28	37	1.92
35661840--35661873	16	2.1	16	88	0	50	44	20	14	20	1.87
35671064--35671100	14	2.6	14	100	0	74	29	13	10	45	1.77
35671166--35671208	23	1.9	22	90	4	68	46	0	0	53	1.00
35672695--35672731	14	2.6	14	100	0	74	29	13	10	45	1.77
35672797--35672839	23	1.9	22	90	4	68	46	0	0	53	1.00
35673344--35673375	1	32.0	1	100	0	64	100	0	0	0	0.00
35674692--35674749	3	19.3	3	85	0	53	34	6	0	58	1.25
35676344--35676382	12	3.2	12	88	0	51	61	15	5	17	1.51
35692793--35692817	8	3.1	8	100	0	50	52	0	24	24	1.48
35694739--35694771	8	4.1	8	100	0	66	51	0	24	24	1.48
35696166--35696250	45	1.9	44	83	7	109	15	29	21	34	1.94
35697154--35697296	29	5.0	29	73	8	139	23	26	13	36	1.92
35697152--35697318	86	1.9	87	90	1	264	23	26	13	35	1.93
35699129--35699263	25	5.4	25	81	0	144	30	19	20	30	1.97
35704213--35704267	6	9.7	6	86	7	71	14	18	1	65	1.36
35705329--35705376	10	4.6	11	87	10	66	18	6	6	68	1.32
35705337--35705374	19	2.0	20	94	5	69	21	2	7	68	1.28
35712302--35712364	31	2.0	31	100	0	126	36	38	6	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35719237--35719275	20	1.9	21	84	5	53	43	2	12	41	1.56
35721014--35721069	22	2.5	22	88	0	76	39	7	10	42	1.67
35723552--35723606	20	2.7	21	80	8	60	36	20	32	10	1.87
35723562--35723678	20	5.8	20	74	4	92	37	19	30	11	1.88
35729696--35729720	7	3.6	7	100	0	50	60	0	12	28	1.32
35734658--35734692	17	2.1	17	94	0	61	28	14	5	51	1.65
35742199--35742246	11	4.3	12	75	15	50	43	2	0	54	1.12
35742202--35742244	22	2.0	22	86	9	61	41	2	0	55	1.12
35742199--35742246	5	8.7	6	80	13	50	43	2	0	54	1.12
35742885--35743625	368	2.0	369	88	1	1094	33	19	13	33	1.91
35751209--35751475	81	3.3	81	82	7	285	39	19	19	20	1.93
35751223--35751505	27	10.5	27	82	10	255	39	18	19	22	1.92
35751698--35751787	27	3.4	25	79	11	83	20	24	23	32	1.98
35751749--35751806	26	2.2	26	84	0	80	22	22	20	34	1.97
35751759--35751814	26	2.2	26	83	0	67	17	23	26	32	1.97
35751805--35752021	32	6.8	32	80	6	190	19	18	23	38	1.93
35751835--35752071	96	2.5	94	82	3	267	20	18	21	39	1.92
35751837--35752070	64	3.7	64	78	6	224	20	18	21	39	1.93
35751804--35752070	32	8.4	32	79	1	162	19	19	22	38	1.93
35753527--35753689	29	5.6	29	81	1	191	25	15	23	35	1.94
35753527--35753689	59	2.8	59	85	5	199	25	15	23	35	1.94
35753530--35753718	88	2.2	86	83	6	229	25	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35753527--35753718	29	6.6	29	78	5	183	26	15	22	35	1.94
35755187--35755265	27	3.0	26	81	5	86	21	25	21	31	1.98
35755221--35755278	26	2.2	26	84	0	80	22	22	20	34	1.97
35755231--35755286	26	2.2	26	83	0	67	17	23	26	32	1.97
35755277--35755493	32	6.8	32	80	6	190	19	18	23	38	1.93
35755307--35755543	96	2.5	94	82	3	267	20	18	21	39	1.92
35755309--35755542	64	3.7	64	78	6	224	20	18	21	39	1.93
35755276--35755542	32	8.4	32	79	1	162	19	19	22	38	1.93
35756999--35757161	29	5.6	29	81	1	191	25	15	23	35	1.94
35756999--35757161	59	2.8	59	85	5	199	25	15	23	35	1.94
35757002--35757190	88	2.2	86	83	6	229	25	15	22	35	1.94
35756999--35757190	29	6.6	29	78	5	183	26	15	22	35	1.94
35758301--35758325	2	12.5	2	100	0	50	52	0	0	48	1.00
35768002--35768058	25	2.3	24	77	17	71	63	3	1	31	1.22
35768781--35768822	22	2.1	19	86	13	57	52	0	2	45	1.13
35778534--35778781	27	9.2	27	83	6	299	44	18	18	18	1.87
35778927--35779045	28	4.3	28	86	1	168	26	24	19	30	1.98
35779848--35779884	17	2.2	17	95	0	65	51	8	18	21	1.72
35788119--35788674	27	20.6	27	84	2	521	21	16	20	41	1.90
35796423--35796470	10	4.7	10	80	12	53	64	2	0	33	1.05
35796421--35796470	22	2.4	20	86	6	64	62	4	0	34	1.14
35809189--35809270	25	3.3	25	82	0	92	29	20	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35821140--35821197	30	1.9	30	89	0	89	41	3	24	31	1.71
35821535--35821819	50	5.7	50	94	0	471	25	22	32	20	1.98
35828189--35828236	22	2.2	22	100	0	96	41	22	4	31	1.73
35833417--35833559	50	2.8	51	88	6	227	25	16	29	28	1.96
35833569--35833858	41	7.0	41	78	18	314	23	18	25	32	1.97
35833569--35833862	84	3.5	84	97	0	536	23	19	25	31	1.98
35836183--35836221	18	2.2	18	90	0	60	51	2	20	25	1.60
35848026--35848053	14	2.0	14	100	0	56	57	0	7	35	1.26
35858947--35858976	14	2.1	15	93	6	53	43	26	10	20	1.83
35859965--35860034	36	1.9	36	100	0	140	30	27	0	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131