genome.fa.s9.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  11  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3452267--3452307	2	20.5	2	100	0	82	51	0	0	48	1.00
3453901--3453972	26	2.8	25	77	6	72	33	13	12	40	1.83
3454121--3454154	17	1.9	18	88	5	52	11	26	0	61	1.30
3456605--3456731	64	2.0	64	93	0	218	33	17	15	33	1.92
3459151--3459284	49	2.7	49	83	2	144	17	14	22	44	1.86
3465531--3465606	26	2.9	25	78	7	80	31	15	9	43	1.79
3469954--3469991	17	2.2	17	90	0	58	47	5	0	47	1.24
3485985--3486091	27	4.0	27	85	4	110	32	18	24	24	1.97
3486149--3486207	24	2.5	24	86	5	84	20	6	25	47	1.74
3486271--3486335	27	2.4	27	83	14	82	20	24	23	32	1.98
3486289--3486341	27	2.0	27	81	7	63	22	26	20	30	1.98
3486410--3486542	32	4.2	32	73	7	108	18	23	22	36	1.95
3486379--3486542	64	2.6	64	80	3	152	20	23	20	35	1.96
3486376--3486564	96	2.0	96	81	0	225	21	22	20	35	1.96
3486799--3486852	28	1.9	28	92	0	90	16	27	25	29	1.97
3494352--3494498	55	2.6	56	80	4	161	28	25	17	29	1.97
3494475--3494766	54	5.4	53	84	6	374	29	15	20	34	1.94
3494475--3494763	160	1.8	160	90	3	465	28	15	21	34	1.94
3495929--3495976	20	2.4	21	82	6	55	47	0	6	45	1.27
3498525--3498751	104	2.2	105	80	4	244	22	29	24	23	1.99
3500649--3500682	15	2.1	17	89	10	54	64	2	0	32	1.08
3509814--3509999	41	4.5	41	93	0	309	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3512884--3512959	20	3.8	20	80	13	77	75	1	19	3	1.04
3521391--3521588	42	4.7	43	80	2	220	31	29	15	23	1.95
3521391--3521588	85	2.3	84	82	6	247	31	29	15	23	1.95
3521391--3521602	43	5.0	43	81	2	230	32	29	16	22	1.95
3527527--3527618	27	3.4	27	74	5	105	36	2	17	43	1.61
3527551--3527627	9	8.6	9	72	11	68	36	2	18	42	1.64
3527638--3527662	13	1.9	13	100	0	50	44	8	0	48	1.32
3529903--3529946	22	2.0	22	82	8	54	59	11	2	27	1.44
3537928--3537952	2	12.5	2	100	0	50	48	0	0	52	1.00
3545388--3545459	26	2.7	27	85	10	103	43	9	15	31	1.79
3559796--3559933	43	3.3	43	83	3	174	29	31	17	21	1.96
3561382--3561447	33	1.9	35	87	6	100	31	9	12	46	1.72
3561397--3561435	20	2.0	20	90	5	62	28	10	10	51	1.68
3561534--3561572	20	2.0	20	94	0	69	48	2	0	48	1.15
3563769--3564031	130	2.0	131	96	1	492	32	11	17	38	1.86
3565362--3565387	11	2.4	11	100	0	52	61	15	0	23	1.33
3565630--3565679	25	2.0	25	88	0	73	58	4	32	6	1.41
3571797--3572200	77	5.2	76	84	1	450	41	15	18	24	1.89
3571806--3572001	40	5.1	39	69	12	127	41	13	18	26	1.88
3580890--3580927	2	19.0	2	88	0	58	50	5	0	44	1.24
3582943--3582975	16	2.1	16	94	0	57	39	6	30	24	1.79
3583152--3583215	25	2.9	21	76	17	65	35	18	39	6	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3583153--3583203	25	2.0	25	96	0	93	33	19	39	7	1.81
3583205--3583262	21	2.8	21	91	0	89	36	15	44	3	1.63
3583608--3583860	43	5.9	42	79	6	231	24	16	30	28	1.97
3583570--3583840	86	3.2	84	81	7	296	24	15	29	30	1.96
3590468--3590492	13	1.9	13	100	0	50	40	0	8	52	1.31
3590493--3590563	25	2.9	24	79	8	72	47	2	1	47	1.25
3593552--3593618	22	3.0	22	76	8	73	40	17	25	16	1.90
3600856--3601054	27	7.4	27	79	2	211	42	21	19	16	1.89
3602246--3602338	27	3.4	27	86	2	134	39	21	18	20	1.92
3605781--3605817	3	12.3	3	100	0	74	64	0	0	35	0.94
3606540--3606584	18	2.5	17	80	13	54	71	0	13	15	1.15
3606981--3607041	24	2.5	24	72	2	59	39	4	37	18	1.72
3609684--3609726	18	2.4	18	80	11	52	20	18	37	23	1.94
3610077--3610253	27	6.6	27	74	6	135	40	19	16	23	1.91
3610077--3610253	54	3.3	54	77	3	185	40	19	16	23	1.91
3610099--3610269	81	2.1	81	86	2	236	37	20	20	21	1.95
3610099--3610273	27	6.5	27	76	3	120	37	20	20	21	1.95
3611668--3612001	27	12.4	26	77	8	258	44	22	15	17	1.86
3613570--3613601	14	2.4	14	94	5	57	21	18	15	43	1.87
3616195--3616229	3	11.7	3	100	0	70	34	0	0	65	0.93
3616549--3616838	150	1.9	150	86	2	413	42	5	9	42	1.60
3617742--3617830	27	3.3	27	96	0	160	35	11	10	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619669--3619706	17	2.2	17	90	0	58	31	7	15	44	1.75
3619679--3619739	17	3.5	17	76	14	54	24	14	18	42	1.88
3635846--3636142	50	5.8	50	80	3	186	28	20	26	24	1.99
3649899--3649960	18	3.4	18	75	2	61	29	11	16	43	1.82
3651634--3651740	50	2.1	50	79	3	117	26	20	32	20	1.97
3659304--3659354	21	2.4	21	83	9	59	62	9	3	23	1.42
3659642--3659671	12	2.5	12	94	0	51	40	0	43	16	1.48
3670038--3670158	61	2.0	61	95	0	215	30	14	20	34	1.92
3672334--3672381	24	2.0	24	83	0	60	47	10	6	35	1.63
3682041--3682085	19	2.4	19	88	0	63	24	26	28	20	1.99
3682107--3682152	19	2.4	19	81	0	56	30	26	26	17	1.97
3688627--3688672	22	2.1	21	84	11	58	15	4	8	71	1.26
3694802--3694837	18	2.0	18	94	0	63	38	19	11	30	1.86
3703596--3703634	20	1.9	21	94	5	71	33	2	0	64	1.08
3703596--3703640	20	2.1	21	88	8	65	35	2	0	62	1.08
3710660--3711315	27	24.4	27	80	5	531	42	18	18	19	1.89
3711690--3711768	28	2.8	28	80	0	86	22	24	25	27	2.00
3718752--3719269	27	19.3	26	80	5	365	44	17	17	20	1.87
3718777--3719253	54	8.9	53	80	6	419	44	18	16	20	1.87
3718752--3719252	81	6.2	80	80	6	460	44	17	16	20	1.87
3719593--3719646	28	1.9	28	88	0	81	24	25	22	27	2.00
3722971--3723009	21	1.9	21	89	5	62	35	7	17	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3723195--3723242	20	2.4	21	74	22	57	31	14	14	39	1.86
3725000--3725362	41	8.7	40	76	10	334	22	16	25	35	1.95
3725000--3725364	84	4.4	84	89	2	524	22	16	25	35	1.95
3734749--3734838	20	4.5	19	78	12	74	31	8	12	47	1.71
3734748--3734838	40	2.3	40	79	7	96	31	8	12	47	1.71
3735507--3735605	42	2.3	42	79	6	101	26	16	27	30	1.96
3736970--3737109	45	3.1	45	89	0	199	20	20	20	40	1.92
3741747--3741903	45	3.5	45	79	4	156	20	23	15	40	1.91
3753079--3753171	35	2.6	36	81	3	116	45	29	9	16	1.79
3770172--3770215	12	3.7	12	87	0	70	52	20	15	11	1.74
3774253--3774395	40	3.6	40	80	4	146	26	21	23	28	1.99
3776910--3777070	44	3.6	44	79	0	142	32	22	16	27	1.96
3777088--3777397	136	2.3	137	87	0	415	29	19	17	33	1.95
3777187--3777480	44	6.6	44	73	12	152	30	22	17	29	1.97
3777367--3777481	44	2.6	44	88	2	160	33	24	18	24	1.97
3778371--3778413	14	2.9	14	86	10	59	2	18	0	79	0.85
3778365--3778415	20	2.4	21	77	6	50	3	19	0	76	0.94
3784393--3784432	20	2.0	20	90	0	62	32	2	5	60	1.32
3818941--3819008	33	2.1	33	97	0	127	29	19	17	33	1.95
3822105--3822132	10	2.8	10	100	0	56	75	0	25	0	0.81
3822105--3822155	5	10.4	5	76	4	50	74	1	21	1	1.02
3822666--3822724	20	2.8	21	76	7	66	15	1	13	69	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3823021--3823138	44	2.7	44	77	5	114	28	21	19	30	1.97
3841240--3841327	45	2.0	44	84	10	117	39	14	22	22	1.91
3842431--3842714	138	2.1	138	89	4	439	44	6	7	41	1.59
3849307--3849353	23	2.0	23	100	0	94	29	4	21	44	1.71
3849405--3849446	13	3.2	13	93	3	66	45	0	0	54	0.99
3853825--3853938	37	3.1	37	93	0	192	21	26	25	27	1.99
3853825--3853976	74	2.1	74	81	2	171	23	25	25	25	2.00
3861406--3861449	23	1.9	22	82	17	54	36	25	0	38	1.56
3861495--3861587	45	2.1	45	91	0	150	31	22	20	25	1.98
3874520--3874845	49	6.5	49	72	13	202	22	28	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131