genome.fa.s9.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  13  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242649--4242708	27	2.2	27	82	5	77	25	40	16	18	1.91
4246427--4246485	11	5.2	11	75	20	50	42	0	35	22	1.54
4261242--4261304	31	2.0	32	84	3	83	46	11	9	33	1.72
4262780--4262823	20	2.2	20	88	8	63	47	4	0	47	1.22
4263274--4263378	43	2.4	43	95	4	183	35	7	11	45	1.69
4263933--4263973	20	2.0	22	85	9	59	51	4	0	43	1.23
4264057--4264106	20	2.6	19	84	6	57	42	2	8	48	1.44
4266398--4266492	45	2.1	45	96	1	174	31	18	30	18	1.96
4301942--4302048	41	2.6	40	83	4	133	22	28	16	31	1.96
4315024--4315169	41	3.6	41	83	5	188	21	26	17	34	1.95
4317488--4317531	20	2.2	20	87	0	61	22	25	4	47	1.70
4317498--4317543	20	2.3	20	92	0	74	23	26	2	47	1.63
4317590--4317656	24	2.8	24	82	8	91	34	22	20	22	1.97
4322639--4322691	21	2.6	21	93	3	90	13	49	7	30	1.69
4323874--4323899	9	2.9	9	100	0	52	69	11	7	11	1.37
4337461--4337573	46	2.5	46	80	2	129	21	23	10	45	1.82
4337554--4337933	45	8.4	45	82	2	399	22	21	17	39	1.92
4337554--4337933	90	4.2	90	85	3	446	22	21	17	39	1.92
4337554--4337933	135	2.8	135	85	2	469	22	21	17	39	1.92
4337725--4337986	45	5.8	45	76	8	139	23	20	14	41	1.90
4337555--4337983	135	3.2	135	83	2	407	22	20	16	40	1.91
4342814--4342890	29	2.6	29	83	2	100	19	29	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348380--4348612	27	8.7	27	84	0	261	37	20	18	24	1.94
4348362--4348632	54	5.1	54	80	3	264	36	20	19	23	1.95
4348879--4349124	32	7.7	32	73	8	153	21	22	21	34	1.97
4348911--4349144	95	2.5	95	81	1	281	21	21	20	35	1.96
4349194--4349246	26	2.0	26	88	0	79	18	26	18	35	1.95
4353830--4354064	32	7.4	32	81	2	276	39	19	19	22	1.92
4354056--4354110	26	2.1	26	86	0	74	40	30	10	18	1.85
4354237--4354318	24	3.4	24	87	0	110	52	25	3	18	1.61
4354422--4354775	27	13.2	26	80	5	307	28	8	22	40	1.84
4354422--4354775	54	6.6	53	82	5	345	28	8	22	40	1.84
4354417--4354792	81	4.7	81	80	5	352	27	9	23	39	1.85
4354436--4354817	27	14.3	27	78	7	199	27	9	23	40	1.85
4361426--4361555	50	2.5	50	83	7	152	26	20	29	24	1.99
4361465--4361589	50	2.5	50	78	10	146	27	23	28	21	1.99
4371626--4371900	30	9.2	30	76	7	229	23	25	13	37	1.91
4393949--4393997	23	2.1	23	100	0	98	30	22	8	38	1.83
4407644--4407694	25	2.0	25	96	0	93	37	21	15	25	1.93
4427833--4427953	60	2.0	60	96	0	224	23	27	14	35	1.93
4431014--4431042	14	2.0	15	93	6	51	75	10	6	6	1.17
4437511--4437710	32	6.3	32	85	0	249	37	20	19	22	1.94
4437524--4437714	96	2.0	96	91	0	310	37	19	19	23	1.95
4437884--4437939	24	2.3	24	87	0	76	46	19	8	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4437897--4438016	24	5.0	25	77	7	97	43	19	7	30	1.78
4438026--4438102	26	2.9	26	84	1	64	27	19	18	35	1.95
4438036--4438140	27	3.9	26	83	5	129	23	21	19	35	1.96
4438036--4438140	53	2.0	54	83	5	133	23	21	19	35	1.96
4438150--4438233	27	3.1	27	87	3	116	23	20	16	39	1.92
4442103--4442345	50	4.8	50	89	0	360	23	30	20	25	1.98
4459956--4459983	14	2.0	14	100	0	56	35	14	0	50	1.43
4470303--4470347	21	2.1	21	84	8	56	13	13	28	44	1.81
4473099--4473217	27	4.4	27	79	0	130	15	20	17	47	1.83
4473099--4473217	54	2.2	54	86	3	159	15	20	17	47	1.83
4476610--4476646	20	1.9	19	89	10	58	27	18	0	54	1.44
4480188--4480304	28	4.2	28	87	1	164	31	21	24	22	1.98
4480648--4480766	27	4.4	27	82	9	127	15	23	19	41	1.90
4484198--4484354	79	2.0	80	98	1	307	41	16	5	36	1.71
4491116--4491624	254	2.0	253	87	0	739	39	11	13	35	1.81
4492931--4492962	15	2.2	15	94	5	57	65	0	3	31	1.08
4505745--4505861	42	2.7	42	76	6	110	33	23	17	26	1.96
4511662--4511699	19	2.0	19	100	0	76	26	10	15	47	1.78
4515922--4515965	12	3.7	11	88	11	61	40	0	18	40	1.50
4518980--4519099	43	2.8	43	76	9	122	37	26	13	22	1.91
4521227--4521258	16	2.0	16	93	0	55	25	15	0	59	1.36
4533302--4533338	16	2.2	18	90	9	60	64	5	5	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4535212--4535254	21	2.0	21	81	0	50	25	11	9	53	1.67
4535472--4535507	19	1.9	18	88	5	54	41	2	0	55	1.14
4542002--4542057	27	2.0	28	86	10	80	32	5	8	53	1.55
4543089--4543181	45	2.0	46	97	2	179	39	12	8	38	1.74
4547904--4547990	29	3.0	29	81	1	102	39	21	16	22	1.92
4557676--4557798	54	2.3	55	88	1	185	21	20	29	28	1.98
4566955--4567014	21	3.0	20	85	4	84	21	26	3	48	1.66
4570626--4570735	40	2.8	40	81	4	132	20	28	19	32	1.96
4579655--4579679	10	2.5	10	100	0	50	60	32	0	8	1.26
4580343--4580427	29	2.9	29	75	1	80	37	21	17	23	1.94
4585924--4586299	44	8.1	44	69	18	217	26	21	19	32	1.97
4585867--4586295	142	3.0	142	92	0	705	27	21	18	32	1.96
4587572--4587604	14	2.5	14	90	9	52	18	15	0	66	1.25
4598712--4598754	18	2.4	18	80	7	52	65	0	4	30	1.13
4606993--4607030	15	2.4	16	86	4	60	34	15	7	42	1.76
4607261--4607293	5	6.6	5	100	0	66	42	18	21	18	1.89
4622999--4623034	2	18.5	2	94	5	65	50	0	0	50	1.00
4631765--4631804	21	1.9	22	90	10	57	7	12	5	75	1.18
4632756--4632822	26	2.5	27	85	9	84	31	5	0	62	1.19
4632774--4632963	26	7.5	26	71	12	137	27	7	4	60	1.45
4632775--4632963	50	3.8	49	77	10	177	27	7	4	59	1.46
4641020--4641061	19	2.2	20	83	12	52	64	2	2	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642333--4642372	19	2.1	19	86	9	55	37	0	27	35	1.57
4647801--4647852	25	2.1	25	96	0	95	44	7	5	42	1.57
4652931--4652988	29	2.0	30	83	10	75	56	3	1	37	1.26
4656573--4656680	51	2.1	51	83	8	132	41	10	25	23	1.85
4667178--4667226	10	5.0	10	87	5	64	0	8	2	89	0.55
4667183--4667218	1	36.0	1	94	0	63	0	2	0	97	0.18
4673228--4673336	7	15.7	7	90	4	168	15	0	37	46	1.46
4674713--4674762	22	2.3	22	92	0	82	28	32	0	40	1.57
4674734--4674792	30	2.0	30	93	0	100	28	33	0	37	1.58
4674713--4674815	52	2.0	52	96	0	188	30	33	0	36	1.58
4674764--4674814	22	2.3	22	93	6	86	29	35	0	35	1.58
4674848--4674914	10	6.5	10	72	5	53	32	1	0	65	1.02
4674848--4674914	31	2.2	31	94	0	116	32	1	0	65	1.02
4675798--4675842	7	6.4	7	94	0	72	20	0	13	66	1.24
4682139--4682181	11	4.2	10	85	11	52	74	9	0	16	1.06
4682142--4682181	19	2.1	19	85	4	53	77	7	0	15	0.98
4682311--4682647	153	2.2	154	90	5	517	28	8	8	54	1.60
4682537--4682734	101	2.0	100	91	1	324	28	11	10	49	1.71
4682384--4682900	254	2.0	253	89	3	781	29	10	8	50	1.67
4683156--4683191	17	2.1	17	94	0	63	19	0	8	72	1.10
4694129--4694159	15	2.1	15	93	0	53	32	29	19	19	1.96
4695313--4695364	20	2.6	20	84	0	77	36	7	0	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4695387--4695426	20	2.0	20	85	9	55	35	0	0	65	0.93
4695390--4695426	19	2.0	18	89	5	56	35	0	0	64	0.94
4706922--4706966	19	2.3	20	88	3	65	40	0	35	24	1.56
4715487--4715520	15	2.3	15	90	5	52	70	0	2	26	1.01
4715687--4715733	23	2.0	24	83	4	60	27	31	17	23	1.96
4727251--4727396	30	4.2	37	74	20	127	33	1	1	63	1.11
4731853--4731886	17	2.0	17	94	0	59	47	11	2	38	1.55
4734325--4734389	15	4.4	15	73	15	55	20	1	0	78	0.83
4734335--4734384	17	2.8	19	75	25	63	20	2	0	78	0.86
4734501--4734548	22	2.2	21	82	10	53	12	6	2	79	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131