genome.fa.s9.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  92  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30877859--30877888	13	2.3	13	94	0	51	56	6	6	30	1.51
30906439--30906494	24	2.3	24	90	0	94	33	12	25	28	1.92
30906823--30906878	24	2.3	24	87	6	78	35	12	23	28	1.91
30907143--30907387	41	5.6	46	74	13	207	30	20	21	27	1.98
30906362--30907140	384	2.0	383	96	0	1326	36	15	19	28	1.93
30907128--30907387	130	2.0	130	94	0	457	31	20	21	27	1.98
30907282--30907443	85	1.9	86	84	3	220	30	20	22	27	1.98
30910319--30910404	42	2.0	43	86	6	122	50	1	23	25	1.57
30912608--30912693	34	2.5	34	81	3	102	19	18	31	30	1.96
30912631--30912682	17	3.1	16	75	5	50	15	19	36	28	1.92
30913105--30913146	6	7.0	6	81	10	50	78	2	2	16	0.96
30919687--30919754	34	2.0	34	97	0	127	39	14	13	32	1.85
30921313--30921370	21	2.8	20	84	7	71	41	32	10	15	1.81
30924378--30924416	15	2.6	15	87	0	60	43	12	25	17	1.85
30937134--30937172	10	3.9	10	93	0	60	38	25	0	35	1.56
30944539--30944576	15	2.5	15	91	0	67	52	7	21	18	1.70
30955341--30955423	40	2.1	40	86	4	114	50	22	12	14	1.76
30958017--30958058	18	2.3	19	80	12	52	78	0	11	9	0.96
30959142--30959188	20	2.4	20	85	3	60	72	0	4	23	1.02
30960777--30960859	36	2.2	36	83	10	105	53	3	3	39	1.36
30962782--30962857	28	2.7	28	93	0	125	23	17	31	27	1.97
30967463--30967652	76	2.6	74	89	5	278	40	9	4	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30970811--30970902	34	2.9	31	80	19	116	40	20	10	28	1.86
30972818--30972877	16	3.8	16	71	8	50	50	3	3	43	1.35
30980777--30980826	11	4.4	12	78	12	52	70	2	4	24	1.15
30980778--30980828	22	2.3	22	80	12	61	68	1	3	25	1.17
30980775--30980826	12	4.5	12	76	9	54	69	1	3	25	1.16
30983108--30983150	18	2.4	18	88	0	59	18	27	9	44	1.80
30989112--30989312	99	2.0	100	99	0	395	52	12	4	29	1.61
30989126--30989280	51	3.1	51	61	28	123	50	12	5	30	1.64
30991696--30991916	106	2.1	107	98	0	426	43	9	4	43	1.55
30995942--30995998	21	2.7	22	89	5	82	35	0	3	61	1.13
30997643--30997679	16	2.4	16	86	8	51	64	5	18	10	1.43
30999655--30999805	50	2.9	51	84	3	178	27	21	29	21	1.99
30999806--30999847	19	2.3	19	95	4	77	26	9	9	54	1.63
30999961--31000155	50	3.8	51	80	4	187	29	21	27	22	1.99
30999516--31000114	306	2.0	306	100	0	1198	31	16	23	28	1.96
31000406--31000444	12	3.2	12	85	0	51	51	5	23	20	1.67
31007662--31007700	12	3.2	12	96	0	69	17	20	7	53	1.68
31008826--31008861	18	1.9	19	88	5	56	44	19	0	36	1.51
31019082--31019121	5	8.2	5	83	5	55	57	2	0	40	1.12
31020929--31021260	85	3.9	85	90	0	475	28	19	21	31	1.97
31021087--31021221	38	3.3	38	70	23	130	30	20	17	31	1.96
31024584--31024630	23	2.0	24	84	12	62	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31026590--31026649	25	2.4	25	80	2	68	16	21	20	41	1.90
31026781--31026836	25	2.3	23	77	14	60	23	26	21	28	1.99
31027695--31027752	24	2.4	24	100	0	116	12	8	29	50	1.69
31027978--31028002	11	2.3	11	100	0	50	0	16	48	36	1.46
31029544--31029578	2	18.0	2	94	5	63	48	0	0	51	1.00
31036119--31036280	79	2.1	79	96	0	297	34	12	13	38	1.83
31041960--31041997	20	1.9	20	94	0	67	10	5	50	34	1.59
31049011--31049053	22	2.0	22	95	0	77	27	6	18	46	1.75
31053605--31053661	30	1.9	30	89	7	89	57	3	1	36	1.26
31053654--31053702	17	2.9	17	74	14	57	44	0	10	44	1.37
31054201--31054276	19	3.8	19	89	8	116	36	17	9	36	1.81
31058306--31058463	86	1.8	86	87	0	235	51	15	17	15	1.76
31059685--31059745	23	2.5	25	84	7	72	60	6	6	26	1.46
31059763--31059804	17	2.5	17	80	7	50	69	2	4	23	1.20
31060086--31060138	21	2.5	21	78	6	63	67	24	0	7	1.16
31085189--31085274	44	2.0	44	100	0	172	32	16	24	26	1.96
31085122--31085556	45	9.8	44	72	14	250	29	20	23	26	1.98
31085315--31085506	95	2.0	95	94	0	339	28	20	24	26	1.99
31085522--31085690	66	2.6	66	94	0	293	28	21	24	24	1.99
31088397--31088578	50	3.6	50	89	0	256	20	30	23	25	1.99
31091169--31091202	5	7.0	5	86	6	52	41	20	0	38	1.53
31091164--31091202	14	2.8	14	81	11	53	43	20	0	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31097288--31097541	55	4.6	56	85	5	358	45	5	12	36	1.64
31097288--31097540	56	4.6	56	85	6	356	45	5	12	36	1.64
31097288--31097540	110	2.3	109	97	2	479	45	5	12	36	1.64
31097539--31097642	29	3.8	28	81	15	128	26	0	25	46	1.59
31097551--31097637	24	3.5	24	87	9	104	25	0	26	48	1.52
31097627--31097657	5	6.2	5	100	0	62	19	0	41	38	1.51
31098527--31098551	7	3.6	7	100	0	50	60	12	0	28	1.32
31102359--31102404	1	46.0	1	95	0	83	2	0	0	97	0.15
31121051--31121092	21	2.0	21	86	9	59	40	2	0	57	1.12
31133892--31133922	14	2.2	14	94	0	53	77	0	0	22	0.77
31135246--31135288	22	1.9	23	85	4	61	39	6	0	53	1.28
31137237--31137273	16	2.2	18	90	9	60	45	2	5	45	1.40
31138032--31138056	7	3.6	7	100	0	50	56	0	0	44	0.99
31141765--31141810	19	2.4	20	82	7	60	54	4	0	41	1.20
31143037--31143067	7	4.4	7	91	0	53	19	0	48	32	1.49
31143037--31143101	21	3.0	21	75	4	67	23	0	41	35	1.55
31143529--31143854	148	2.2	147	92	1	546	37	12	15	34	1.85
31148102--31148371	43	6.3	42	85	5	362	21	18	28	30	1.97
31148465--31148508	22	2.0	22	90	0	70	45	27	18	9	1.79
31152093--31152183	31	3.0	30	90	3	137	27	21	7	42	1.80
31154424--31154475	27	1.9	27	84	7	70	19	5	0	75	1.01
31156041--31156091	26	2.0	25	96	3	93	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31156230--31156271	20	2.2	19	86	4	57	35	9	7	47	1.64
31159027--31159107	9	8.8	9	70	14	58	25	0	1	72	0.92
31159032--31159113	16	5.1	16	80	11	105	26	0	1	71	0.93
31159031--31159124	48	2.0	48	91	0	152	27	2	1	69	1.07
31159144--31159191	18	2.7	18	78	9	53	39	4	4	52	1.40
31163628--31163670	21	2.0	21	86	8	61	34	0	6	58	1.25
31163687--31163732	18	2.6	18	86	3	58	43	0	2	54	1.12
31163642--31163806	56	2.7	63	72	21	179	43	1	6	49	1.35
31163905--31163952	16	2.9	17	81	9	64	22	29	6	41	1.78
31170306--31170354	22	2.2	22	96	0	89	42	6	18	32	1.75
31172402--31172514	23	4.8	23	80	2	118	56	5	6	31	1.46
31172487--31172526	17	2.4	17	91	0	62	57	10	5	27	1.52
31174285--31174367	42	2.0	42	85	0	112	14	33	9	42	1.78
31184494--31184555	30	2.1	30	96	0	115	24	3	14	58	1.51
31187469--31187710	133	1.8	132	81	7	301	42	13	14	30	1.84
31206781--31206846	30	2.2	29	81	10	89	53	6	9	31	1.57
31212672--31213449	89	8.7	89	86	3	1017	30	15	25	28	1.96
31213420--31213525	44	2.4	44	80	1	122	34	14	23	27	1.93
31215086--31215133	3	16.3	3	86	4	71	27	0	4	68	1.07
31217581--31217624	22	2.0	22	86	0	61	45	25	15	13	1.83
31219622--31219744	59	2.1	59	98	0	237	24	16	43	15	1.86
31220409--31220466	18	3.5	17	75	13	59	27	1	3	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31220407--31220466	24	2.4	23	84	13	75	26	1	3	68	1.15
31220400--31220463	27	2.4	26	75	21	62	25	1	3	70	1.11
31220487--31220524	20	2.0	20	89	5	60	36	2	0	60	1.11
31220587--31220761	62	2.8	63	82	6	205	22	20	10	46	1.81
31221221--31221357	31	4.5	31	73	17	115	43	10	18	26	1.83
31221162--31221357	92	2.1	90	81	6	216	41	13	19	25	1.87
31239872--31239922	25	2.0	25	81	7	59	72	3	3	19	1.16
31239887--31239930	23	2.0	23	86	4	63	75	2	4	18	1.09
31244048--31244085	18	2.1	18	90	0	58	18	18	15	47	1.83
31246906--31246985	31	2.5	31	86	11	110	37	16	7	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131