genome.fa.s9.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  40  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13230775--13230930	55	2.9	54	87	5	233	49	24	4	21	1.68
13230775--13230929	54	2.8	53	90	4	238	49	24	4	21	1.68
13233985--13234029	21	2.1	22	88	8	67	33	15	26	24	1.95
13234045--13234079	16	2.2	16	94	0	61	14	11	14	60	1.60
13234827--13234884	27	2.2	26	78	3	62	29	6	0	63	1.20
13235090--13235193	43	2.4	43	85	0	136	26	22	28	22	1.99
13235113--13235220	43	2.5	43	80	1	119	28	15	29	25	1.96
13236595--13236626	15	2.1	15	100	0	64	25	21	34	18	1.96
13236880--13237041	28	5.7	29	74	3	114	26	15	21	36	1.93
13240805--13240849	17	2.7	17	96	3	83	35	11	22	31	1.89
13243966--13244043	23	3.4	23	87	0	111	38	21	17	21	1.93
13247486--13247577	46	2.0	46	97	0	175	44	22	4	28	1.72
13252381--13252445	30	2.2	30	94	0	112	24	3	15	56	1.53
13253073--13253118	19	2.4	19	76	20	51	54	2	0	43	1.12
13260608--13260647	21	1.9	20	85	10	53	62	5	0	32	1.17
13260767--13261315	85	6.4	85	99	0	1064	38	6	8	45	1.62
13265178--13265223	24	1.9	24	82	8	58	26	4	8	60	1.44
13266862--13266886	10	2.5	10	100	0	50	92	8	0	0	0.40
13268254--13268492	51	4.7	50	79	5	230	25	17	26	30	1.97
13268254--13268530	101	2.7	101	80	4	308	27	16	25	30	1.97
13268254--13268497	50	4.9	49	77	5	211	25	17	26	29	1.97
13274184--13274210	13	2.1	13	100	0	54	22	7	29	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13276496--13276892	101	3.9	101	89	4	564	32	16	15	34	1.91
13282719--13282759	21	1.9	22	85	5	57	48	14	2	34	1.57
13289197--13289254	25	2.3	25	80	14	66	29	0	5	65	1.14
13289219--13289267	19	2.6	18	78	12	53	26	2	8	63	1.34
13291105--13291147	20	2.2	20	91	0	68	25	18	18	37	1.94
13292574--13292636	26	2.4	26	97	0	117	38	7	11	42	1.70
13298935--13299018	42	2.0	41	86	2	114	33	22	16	27	1.96
13302715--13302746	16	1.9	17	93	6	57	31	0	12	56	1.37
13310127--13310188	27	2.3	27	86	2	81	17	16	20	45	1.86
13310441--13310471	10	3.1	10	90	0	53	29	35	22	12	1.91
13313377--13313417	19	2.2	19	100	0	82	29	26	24	19	1.98
13320391--13320472	5	15.8	5	71	16	51	74	1	3	20	1.04
13320391--13320473	15	5.3	15	72	15	62	74	1	3	20	1.03
13320401--13320453	20	2.5	22	73	14	58	77	0	3	18	0.92
13335355--13335404	3	16.7	3	100	0	100	34	0	34	32	1.58
13343381--13343527	73	2.0	72	94	1	258	11	26	12	49	1.74
13343626--13343665	11	3.6	11	93	0	62	35	52	2	10	1.48
13344382--13344482	47	2.1	47	83	3	123	20	16	23	38	1.93
13354926--13354958	14	2.3	15	89	5	50	0	21	0	78	0.75
13361537--13361561	12	2.1	12	100	0	50	52	0	0	48	1.00
13372102--13372158	15	3.9	14	75	6	51	24	0	7	68	1.14
13375642--13375694	28	1.9	28	84	3	72	45	9	1	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13375671--13375715	21	2.1	22	87	4	65	46	6	0	46	1.29
13375880--13375911	15	2.2	15	94	5	57	53	6	3	37	1.42
13375894--13375943	19	2.7	19	87	6	68	48	8	14	30	1.72
13387716--13387806	45	2.0	45	91	0	146	34	19	28	17	1.95
13411983--13412191	104	2.0	105	98	0	402	41	3	10	44	1.57
13412171--13412200	15	1.9	16	93	6	53	46	0	0	53	1.00
13432451--13432595	50	2.9	50	81	0	155	27	22	27	22	1.99
13441375--13441415	19	2.2	19	86	4	57	24	4	7	63	1.40
13447720--13447759	15	2.7	15	92	0	71	32	12	27	27	1.93
13458793--13459062	135	2.0	134	91	0	441	25	17	11	45	1.82
13460629--13460658	12	2.5	12	100	0	60	6	13	0	80	0.91
13460623--13460658	12	3.3	11	88	11	56	8	13	0	77	0.98
13470358--13470540	91	2.0	92	98	1	359	38	7	13	40	1.73
13475040--13475109	30	2.4	30	80	7	81	57	1	1	40	1.17
13475114--13475177	9	6.8	9	78	8	58	64	1	4	29	1.23
13476841--13477261	114	3.7	114	88	2	620	25	23	26	24	2.00
13477161--13477334	73	2.4	73	92	0	285	24	24	25	25	2.00
13477047--13477515	187	2.5	187	90	0	740	26	22	25	26	2.00
13477348--13477515	73	2.3	73	90	2	266	27	20	24	27	1.99
13477734--13477773	7	5.7	7	84	0	53	25	0	37	37	1.56
13478031--13478076	15	3.1	16	82	14	55	28	0	36	34	1.58
13478058--13478127	14	4.9	14	77	10	70	25	1	40	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478078--13478140	15	4.3	15	76	15	53	23	1	39	34	1.65
13478058--13478140	29	2.9	28	74	12	87	26	1	37	34	1.65
13483579--13483758	43	4.2	43	86	1	252	21	17	32	28	1.96
13486031--13486144	43	2.7	43	77	10	124	23	17	28	29	1.97
13498964--13499198	129	1.8	129	93	0	407	28	14	22	34	1.94
13501201--13501425	61	3.7	60	81	3	252	34	13	25	25	1.93
13505500--13505537	17	2.2	17	90	0	58	42	2	44	10	1.52
13507920--13507973	25	2.2	25	86	0	72	44	24	20	11	1.83
13511601--13511651	23	2.2	23	92	0	84	23	9	25	41	1.85
13512924--13512958	4	8.8	4	100	0	70	22	0	0	77	0.78
13513632--13513711	39	2.0	40	97	2	153	22	25	17	35	1.95
13514339--13514379	21	2.0	21	90	0	64	51	29	12	7	1.66
13516021--13516061	21	2.0	21	90	0	64	51	29	12	7	1.66
13520981--13521563	294	2.0	294	90	0	925	32	15	21	30	1.94
13522530--13522577	24	1.9	25	83	8	62	16	4	14	64	1.43
13524277--13524306	16	1.9	16	93	6	53	50	20	0	30	1.49
13530510--13530568	25	2.4	25	94	0	100	33	22	20	23	1.97
13558329--13558358	13	2.2	14	94	5	53	20	0	10	70	1.16
13563321--13563392	22	3.5	22	83	7	89	13	27	19	38	1.90
13563321--13563390	20	3.4	21	82	7	90	12	28	20	38	1.89
13565700--13565740	21	2.0	20	85	4	55	51	12	4	31	1.60
13567845--13568007	82	2.0	82	93	0	281	23	16	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13568603--13568645	17	2.5	17	92	0	77	20	30	30	18	1.97
13571499--13571543	21	2.1	21	83	0	54	0	35	0	64	0.94
13571828--13572417	216	2.7	218	85	7	744	27	19	14	38	1.90
13575954--13576023	27	2.5	29	88	9	117	55	10	0	34	1.33
13576243--13576277	10	3.2	11	92	8	54	65	0	0	34	0.93
13576590--13576629	20	2.0	21	90	5	64	55	2	0	42	1.13
13580262--13580307	6	7.8	6	92	4	76	17	0	47	34	1.48
13593934--13593982	25	2.0	25	87	0	71	26	26	14	32	1.94
13595061--13595248	73	2.6	73	93	0	313	20	25	27	26	1.99
13597953--13598138	48	3.9	48	84	0	246	27	21	29	22	1.99
13598976--13599000	2	12.5	2	100	0	50	52	0	0	48	1.00
13602473--13602589	45	2.6	46	94	4	211	44	15	4	35	1.66
13607339--13607401	29	2.2	29	94	2	110	22	12	23	41	1.88
13613560--13613614	21	2.6	21	72	8	58	41	20	29	9	1.82
13613533--13613689	42	3.7	42	75	8	115	43	15	24	16	1.86
13615390--13615466	40	1.9	40	84	5	102	23	18	29	28	1.97
13622623--13622665	12	3.6	12	80	0	59	37	13	30	18	1.90
13622608--13622674	12	5.6	12	73	5	55	41	13	31	13	1.83
13622607--13622674	24	2.8	24	88	4	102	41	13	30	14	1.84
13630909--13630948	17	2.2	19	83	16	50	30	5	25	40	1.77
13631716--13631753	5	7.4	5	85	11	51	57	0	2	39	1.12
13631714--13631761	21	2.6	17	87	12	60	56	0	2	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13631714--13631782	20	3.5	20	72	20	56	53	0	1	44	1.09
13631674--13631761	17	4.8	17	71	22	70	53	3	3	39	1.34
13631721--13631761	16	2.5	16	88	4	55	56	0	2	41	1.13
13637229--13637261	16	2.1	16	100	0	66	39	24	6	30	1.79
13638765--13638897	59	2.2	57	83	9	151	51	4	3	41	1.38
13641612--13641744	59	2.2	57	83	9	151	51	4	3	41	1.38
13656072--13656304	116	2.0	117	91	2	378	29	29	12	27	1.93
13658968--13659001	16	2.2	16	89	5	52	35	14	8	41	1.77
13659714--13659806	42	2.2	42	88	0	141	20	31	27	20	1.97
13662274--13662328	27	2.0	27	82	10	67	47	1	9	41	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131