genome.fa.s9.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  103  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34104635--34104851	114	1.9	115	97	1	409	43	5	5	46	1.49
34104759--34104830	29	2.7	27	81	14	78	43	0	2	54	1.15
34109666--34109720	20	2.7	20	83	8	67	38	20	30	10	1.87
34119314--34119369	10	5.5	10	81	14	62	60	3	1	33	1.24
34120063--34120119	20	2.8	20	75	2	60	45	1	0	52	1.11
34121600--34121651	21	2.4	22	87	6	70	36	5	3	53	1.43
34121708--34121771	31	2.1	30	85	2	83	56	14	4	25	1.57
34122364--34122409	24	1.9	24	90	0	74	41	19	10	28	1.85
34139589--34139845	93	2.8	93	99	0	505	49	14	8	28	1.72
34139665--34139820	45	3.4	45	66	11	136	51	12	8	26	1.68
34140313--34140341	6	5.0	6	91	8	51	0	13	0	86	0.58
34147091--34147144	17	3.2	17	86	2	83	64	0	9	25	1.23
34151353--34151397	21	2.1	22	87	4	65	37	0	4	57	1.19
34151423--34151458	10	3.7	10	88	7	56	41	0	2	55	1.14
34161194--34161227	17	1.9	18	88	5	52	32	5	0	61	1.20
34166494--34166527	14	2.2	16	90	10	54	55	0	0	44	0.99
34166620--34166659	18	2.2	18	86	8	55	32	5	0	62	1.17
34166620--34166659	19	2.2	18	86	13	55	32	5	0	62	1.17
34167513--34167549	3	12.3	3	100	0	74	67	0	0	32	0.91
34179652--34179709	3	19.3	3	100	0	116	32	0	0	67	0.91
34181345--34181418	32	2.3	32	97	0	139	44	18	6	29	1.76
34184500--34184573	32	2.3	32	97	0	139	44	18	6	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34191445--34191490	13	3.2	14	80	19	51	56	0	0	43	0.99
34191971--34192004	3	11.7	3	93	6	61	70	0	0	29	0.87
34191963--34192004	14	3.1	14	81	18	54	71	0	0	28	0.86
34194745--34194901	78	2.0	79	98	1	307	43	8	7	39	1.65
34195485--34195559	9	8.1	9	72	16	64	56	1	2	40	1.22
34195485--34195532	19	2.6	18	87	6	69	56	2	2	39	1.23
34195485--34195586	28	3.5	28	80	11	100	55	1	3	38	1.29
34196963--34197034	22	3.4	21	70	21	60	47	1	1	50	1.18
34196963--34197035	21	3.5	20	71	22	60	47	1	1	49	1.18
34199459--34199505	21	2.2	22	77	11	53	25	6	2	65	1.27
34199452--34199508	17	3.1	17	72	18	51	26	7	1	64	1.28
34201885--34201973	46	1.9	46	95	0	160	40	17	16	24	1.90
34205509--34205539	2	15.5	2	100	0	62	48	0	0	51	1.00
34207605--34207811	103	2.0	104	98	0	398	41	8	10	39	1.71
34211263--34211342	26	3.1	26	98	0	151	32	3	3	60	1.32
34211686--34211813	63	2.0	63	98	0	247	36	21	18	23	1.95
34211831--34211885	18	3.2	17	80	10	67	69	1	0	29	0.99
34211831--34211886	19	3.2	18	75	9	62	69	1	0	28	0.98
34211861--34211907	21	2.2	21	84	0	58	70	2	6	21	1.20
34213321--34213435	57	1.9	60	84	10	155	53	6	17	21	1.67
34213334--34213426	26	3.4	26	74	18	89	55	5	18	20	1.61
34219364--34219396	13	2.4	14	90	5	50	15	15	15	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34219747--34219777	9	3.4	9	90	0	53	25	12	22	38	1.90
34219903--34219945	21	2.0	21	82	8	52	20	37	0	41	1.53
34223970--34224047	40	2.0	40	100	0	156	41	10	14	34	1.79
34235662--34235767	19	5.5	19	73	16	76	33	8	16	42	1.78
34235705--34235767	20	3.2	20	76	10	67	33	9	14	42	1.78
34236123--34236170	20	2.4	20	86	13	64	31	12	16	39	1.86
34236450--34236501	20	2.7	19	78	3	50	36	7	17	38	1.78
34248121--34248297	84	2.1	85	98	1	347	31	10	4	53	1.54
34248143--34248315	84	2.1	84	91	2	276	33	9	4	52	1.53
34249821--34249860	20	2.0	20	85	9	55	45	10	0	45	1.37
34281146--34281330	43	4.3	43	78	7	162	23	30	21	24	1.99
34281169--34281330	43	3.8	43	81	4	175	24	32	19	23	1.98
34281443--34281849	168	2.4	168	96	1	744	35	21	13	29	1.92
34285040--34285807	41	18.7	41	96	1	1353	33	24	22	19	1.97
34293088--34293138	15	3.4	15	68	10	50	49	7	19	23	1.74
34298367--34298444	15	5.2	15	67	11	61	44	7	21	25	1.79
34298368--34298444	30	2.6	30	95	0	136	44	7	22	25	1.79
34313287--34313336	25	2.0	25	100	0	100	28	20	24	28	1.99
34320709--34321042	165	2.0	166	99	0	661	43	11	15	29	1.82
34321650--34321701	20	2.6	19	75	19	61	55	3	11	28	1.53
34324041--34324070	15	1.9	16	93	6	53	53	3	3	40	1.34
34324187--34324244	28	2.1	28	81	12	66	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34324423--34324459	19	2.0	20	89	10	60	40	10	2	45	1.53
34326247--34326285	19	2.1	19	95	0	69	48	12	10	28	1.74
34329525--34329566	17	2.3	18	84	12	50	76	0	7	16	1.00
34330840--34330888	3	16.3	3	100	0	98	32	0	0	67	0.91
34331832--34331894	30	2.1	30	96	0	117	57	12	3	26	1.51
34335626--34335658	17	1.9	17	93	0	57	42	6	0	51	1.26
34336548--34336580	16	2.1	16	88	11	50	48	9	0	42	1.35
34337644--34337680	11	3.5	11	85	14	51	40	2	0	56	1.13
34342061--34342107	24	2.0	24	83	4	60	48	2	4	44	1.34
34344983--34345030	12	4.0	12	88	0	60	4	16	45	33	1.67
34344983--34345020	6	6.3	6	93	0	67	2	15	47	34	1.60
34344983--34345030	18	2.7	18	86	0	69	4	16	45	33	1.67
34345492--34345724	116	2.0	116	100	0	466	25	9	19	45	1.81
34345823--34345874	3	17.3	3	100	0	104	32	0	0	67	0.91
34346818--34346880	30	2.1	30	96	0	117	57	12	3	26	1.51
34349379--34349661	121	2.3	120	98	0	548	43	0	3	52	1.25
34349746--34349794	16	3.1	15	82	11	62	24	30	6	38	1.80
34354330--34354362	16	2.1	16	88	11	50	48	9	0	42	1.35
34359739--34359763	4	6.2	4	100	0	50	24	0	0	76	0.80
34367811--34367840	6	5.0	6	91	0	51	0	16	46	36	1.47
34369744--34369777	17	2.0	17	100	0	68	47	5	17	29	1.71
34380445--34380548	54	1.9	54	98	0	199	19	23	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34386699--34386776	35	2.2	35	81	0	93	32	6	12	48	1.67
34388760--34388822	31	2.1	30	88	8	92	44	12	4	38	1.64
34388804--34388873	34	2.0	35	97	2	133	60	8	2	28	1.41
34399692--34400013	108	3.0	108	93	0	536	35	19	15	29	1.93
34400230--34400263	8	4.2	8	88	11	52	61	2	8	26	1.40
34401678--34401707	15	1.9	16	93	6	53	3	0	46	50	1.18
34408330--34408395	25	2.6	25	80	0	69	22	6	33	37	1.79
34408495--34408534	18	2.1	20	90	9	66	0	35	0	65	0.93
34411060--34411125	25	2.6	25	80	0	69	22	6	33	37	1.79
34412817--34412868	24	2.2	24	85	0	68	38	5	5	50	1.51
34419965--34420040	24	3.2	24	94	0	125	36	5	9	48	1.58
34420684--34420731	3	16.0	3	100	0	96	66	0	33	0	0.92
34421315--34421375	18	3.2	19	77	22	74	39	13	21	26	1.90
34422322--34422809	243	2.0	244	99	0	969	36	8	15	39	1.78
34433767--34433806	17	2.4	17	87	4	55	27	12	2	57	1.48
34437049--34437095	3	15.7	3	90	0	76	36	2	0	61	1.08
34442781--34442836	22	2.4	24	77	11	64	51	0	1	46	1.11
34442785--34442981	97	2.0	98	99	1	387	43	3	12	41	1.57
34446820--34446871	27	1.9	27	81	14	63	55	3	3	36	1.36
34454869--34454927	24	2.5	24	100	0	118	37	13	0	49	1.43
34454930--34455167	23	10.4	24	69	16	107	29	7	7	55	1.54
34455003--34455070	24	2.9	23	82	10	59	29	5	7	57	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34455112--34455169	21	2.7	21	79	10	64	31	6	6	55	1.53
34455663--34455723	24	2.6	24	80	10	72	21	0	11	67	1.22
34455798--34455841	17	2.5	18	77	3	54	20	4	15	59	1.54
34456422--34456615	102	1.9	103	97	2	372	28	17	14	39	1.89
34475265--34475323	24	2.5	24	100	0	118	37	13	0	49	1.43
34475326--34475563	23	10.4	24	69	16	107	29	7	7	55	1.54
34475399--34475466	24	2.9	23	82	10	59	29	5	7	57	1.50
34475508--34475565	21	2.7	21	79	10	64	31	6	6	55	1.53
34476133--34476193	24	2.6	24	80	10	72	21	0	11	67	1.22
34476268--34476311	17	2.5	18	77	3	54	20	4	15	59	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131