genome.fa.s9.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  91  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30518795--30519055	131	2.0	132	88	2	391	30	21	23	24	1.99
30520573--30520607	15	2.3	15	85	0	52	11	2	2	82	0.88
30520763--30520847	23	3.4	25	79	11	95	34	7	2	56	1.39
30520763--30520858	24	3.9	24	80	12	97	33	6	3	57	1.39
30525767--30525799	17	1.9	17	93	0	57	54	6	0	39	1.25
30532729--30532775	26	1.9	24	87	12	69	31	17	10	40	1.83
30537711--30537755	14	3.2	14	93	0	72	62	4	31	2	1.27
30541559--30541585	12	2.2	12	100	0	54	44	7	7	40	1.60
30543065--30543309	50	4.9	50	81	8	257	22	28	21	28	1.99
30543064--30543361	50	5.9	49	79	10	201	23	27	20	27	1.99
30549050--30549296	50	4.8	50	84	3	287	21	28	22	26	1.99
30556264--30556450	50	3.7	50	84	7	236	22	28	22	26	1.99
30562976--30563207	50	4.5	50	79	10	213	23	28	21	27	1.99
30567006--30567051	18	2.6	18	85	0	56	17	2	15	65	1.37
30567315--30567612	127	2.3	127	82	4	325	33	22	19	24	1.97
30567317--30567612	85	3.5	83	84	6	344	33	22	19	25	1.97
30567318--30567654	42	8.0	42	80	8	319	32	22	19	25	1.97
30568059--30568148	21	4.3	21	82	0	99	6	38	17	36	1.76
30572737--30573090	25	13.6	25	73	16	154	33	1	20	44	1.60
30572748--30573122	9	42.8	9	71	17	263	32	1	20	45	1.62
30572739--30573082	88	3.9	88	83	7	378	33	1	20	44	1.61
30574854--30574891	6	6.3	6	93	0	58	23	15	44	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30575690--30575819	65	2.0	65	98	0	251	38	10	20	30	1.87
30576294--30576343	7	7.0	7	81	4	55	42	34	0	24	1.55
30576332--30576411	35	2.3	35	82	2	90	52	27	0	20	1.46
30576599--30576633	17	2.1	17	89	5	54	60	8	0	31	1.27
30576653--30577443	114	6.9	114	85	0	895	25	23	17	32	1.97
30579109--30579139	15	2.1	15	93	0	53	19	32	9	38	1.84
30583410--30583440	15	2.1	15	93	0	53	25	29	6	38	1.81
30584294--30584334	14	2.9	14	85	3	55	9	2	7	80	0.99
30584295--30584354	31	2.0	28	84	9	75	11	3	6	78	1.06
30588982--30589017	18	2.0	18	100	0	72	27	22	11	38	1.88
30589239--30589292	27	2.0	27	96	0	99	35	29	1	33	1.69
30594289--30594424	50	2.7	50	82	1	173	20	30	22	26	1.98
30597387--30597418	16	2.0	16	93	0	55	25	15	0	59	1.36
30597643--30597776	51	2.6	51	84	4	182	30	29	17	22	1.97
30599440--30599507	24	2.8	23	81	18	77	35	23	17	23	1.95
30601807--30601860	28	2.0	28	85	3	74	40	11	1	46	1.50
30607714--30607832	28	4.3	28	82	1	150	31	20	23	25	1.98
30607937--30607991	26	2.1	26	86	0	74	34	23	20	21	1.97
30608184--30608586	27	15.0	27	80	0	405	19	17	21	41	1.90
30608184--30608586	54	7.5	54	82	1	452	19	17	21	41	1.90
30611633--30611710	21	3.7	21	76	17	81	34	8	17	38	1.82
30611632--30611687	21	2.8	19	87	10	85	33	10	19	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30612550--30612582	14	2.3	15	89	5	50	27	12	33	27	1.92
30612781--30612861	42	1.9	42	84	0	108	33	14	27	24	1.95
30613924--30614067	44	3.3	44	70	7	139	27	31	21	19	1.97
30613920--30614867	88	10.8	88	87	1	1110	28	25	23	22	1.99
30614320--30614457	44	3.1	44	66	15	122	26	23	25	23	2.00
30614583--30614809	44	5.2	44	63	8	120	26	25	25	22	2.00
30615228--30615298	19	3.6	19	90	7	115	35	11	15	38	1.83
30642211--30642252	9	4.9	9	80	8	52	78	0	14	7	0.95
30642666--30642710	21	2.1	22	84	12	58	26	11	13	48	1.75
30649172--30649232	29	2.1	29	87	3	86	50	11	4	32	1.60
30657897--30657958	27	2.3	27	86	5	81	45	22	19	12	1.84
30669420--30669572	41	3.7	41	85	0	198	20	20	24	33	1.97
30669422--30669596	82	2.1	83	79	3	201	21	19	24	34	1.96
30670397--30670661	23	11.5	22	69	10	102	26	10	20	42	1.85
30670385--30670645	69	3.8	69	91	2	380	26	10	20	42	1.85
30670385--30670645	139	1.9	138	87	2	389	26	10	20	42	1.85
30670610--30670674	23	2.8	23	81	4	69	33	10	18	36	1.86
30672657--30672809	76	2.0	77	98	1	299	33	15	5	45	1.69
30679261--30679332	23	3.0	25	70	22	73	69	0	23	6	1.12
30682973--30683727	377	2.0	377	98	0	1476	34	12	22	30	1.92
30689364--30689804	220	2.0	221	99	0	875	35	7	18	37	1.80
30689780--30689872	47	2.0	47	100	0	186	38	8	16	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30695167--30695453	140	2.1	140	89	2	443	28	21	13	36	1.91
30697927--30697988	23	2.5	24	85	15	83	32	20	24	22	1.98
30697909--30697985	26	3.2	23	76	18	75	27	22	24	25	2.00
30697927--30697995	23	2.8	25	79	16	81	31	21	24	21	1.98
30698512--30698536	12	2.1	12	100	0	50	36	8	16	40	1.77
30699881--30700275	197	2.0	197	100	0	790	31	21	16	31	1.95
30706062--30706116	21	2.6	22	72	16	53	47	12	3	36	1.59
30708162--30708211	25	2.0	26	84	11	68	48	4	12	36	1.59
30708575--30708637	21	2.9	22	81	9	76	25	23	22	28	1.99
30714272--30714316	23	2.0	23	82	8	56	22	13	0	64	1.28
30716674--30716720	19	2.3	22	75	21	64	19	23	23	34	1.97
30716680--30716721	19	2.2	19	95	0	75	19	26	21	33	1.97
30718153--30718214	19	3.3	19	90	0	106	37	8	14	40	1.76
30718202--30718226	12	2.1	12	100	0	50	40	0	16	44	1.47
30718216--30718260	23	2.0	23	86	4	65	37	6	17	37	1.76
30720529--30720700	50	3.3	50	82	4	191	22	27	23	26	1.99
30721766--30721860	47	2.0	48	97	2	183	37	17	12	31	1.88
30727926--30727964	20	2.0	20	85	10	53	15	20	5	58	1.55
30728221--30728402	50	3.5	50	80	6	159	23	30	20	26	1.98
30732118--30732155	4	9.5	4	83	11	51	0	21	2	76	0.91
30732115--30732155	13	3.0	13	86	13	64	0	21	2	75	0.92
30738182--30738225	17	2.5	18	77	3	54	70	2	4	22	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30748618--30748645	14	2.0	14	100	0	56	28	21	28	21	1.99
30752928--30753035	26	4.2	26	92	0	171	31	21	15	31	1.94
30754349--30754439	46	2.0	46	93	0	155	19	29	20	29	1.97
30759289--30759418	38	3.5	37	79	3	116	29	16	13	41	1.85
30759411--30759663	40	6.3	40	81	3	269	33	16	20	28	1.95
30767769--30768141	27	14.0	27	82	7	404	19	17	20	41	1.90
30773783--30773968	68	2.7	68	78	3	176	35	18	19	26	1.95
30791934--30792030	39	2.5	39	89	3	151	25	2	22	49	1.61
30791943--30792015	22	3.5	22	74	25	86	26	2	21	49	1.63
30797615--30797645	15	2.1	15	93	0	53	38	6	29	25	1.81
30811159--30811195	19	2.0	18	89	5	56	43	13	2	40	1.58
30815755--30815834	41	1.9	42	92	2	135	50	11	3	35	1.56
30815856--30815903	19	2.6	19	93	3	80	50	14	0	35	1.44
30817012--30817239	112	2.0	113	99	0	449	34	7	12	45	1.71
30823935--30823969	15	2.3	16	85	14	56	51	11	11	25	1.71
30827171--30827219	17	2.8	17	96	3	89	16	30	38	14	1.88
30831929--30831991	24	2.7	25	73	11	71	41	0	11	47	1.39
30831942--30831979	12	3.2	12	78	14	51	39	0	10	50	1.37
30833747--30833878	37	3.6	36	76	10	113	31	12	15	40	1.85
30833736--30833878	74	1.9	74	81	2	171	31	12	14	41	1.83
30840807--30840869	24	2.6	25	82	2	83	33	15	26	23	1.95
30842422--30842606	50	3.7	50	78	3	187	29	23	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30843450--30843594	72	2.0	73	93	4	249	35	26	10	26	1.89
30854029--30854106	40	1.9	41	89	2	122	46	12	14	26	1.80
30857011--30857064	22	2.5	22	77	17	58	29	1	25	42	1.66
30857005--30857097	36	2.5	37	81	10	111	25	5	25	43	1.76
30860826--30860936	57	1.9	57	92	0	186	40	27	11	19	1.87
30864663--30864764	48	2.1	48	100	0	204	19	9	11	58	1.60
30865997--30866034	16	2.4	16	95	0	67	36	15	0	47	1.46
30865997--30866043	16	2.9	16	87	6	51	36	12	2	48	1.53
30872995--30873115	52	2.3	54	77	11	126	42	3	4	49	1.38
30873368--30873428	30	2.0	30	100	0	122	32	13	37	16	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131