genome.fa.s9.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  123  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40498015--40498060	18	2.6	18	96	0	83	45	10	10	32	1.74
40498274--40498333	30	2.0	31	86	3	86	20	40	0	40	1.52
40499032--40499235	104	2.0	104	96	0	372	46	21	3	28	1.69
40500849--40500943	43	2.2	43	92	0	154	29	22	21	27	1.99
40505052--40505083	6	5.3	6	92	0	55	3	62	0	34	1.11
40505739--40505776	19	2.1	19	90	5	60	68	2	23	5	1.23
40507993--40508035	18	2.4	18	92	0	68	48	9	30	11	1.71
40517029--40517123	27	3.6	26	82	2	109	44	17	20	17	1.87
40517311--40517365	26	2.1	26	82	0	65	20	23	21	34	1.97
40517460--40517551	28	3.3	28	85	0	130	25	25	20	29	1.99
40520742--40520781	19	2.0	20	85	4	55	47	30	15	7	1.72
40522296--40522335	16	2.5	16	91	0	62	47	2	7	42	1.45
40522342--40522383	16	2.6	16	96	0	75	33	0	11	54	1.37
40522342--40522392	9	6.1	9	80	17	65	33	0	11	54	1.37
40522344--40522393	25	2.0	25	88	11	77	32	0	12	56	1.36
40522380--40522515	68	2.0	68	95	2	247	36	6	10	47	1.64
40522729--40522878	65	2.6	54	70	22	142	56	5	10	27	1.55
40535739--40535908	41	4.2	41	78	6	157	22	19	25	31	1.98
40535957--40536140	7	25.7	7	66	12	52	21	1	32	44	1.62
40536013--40536050	15	2.6	14	87	4	58	18	0	36	44	1.50
40536008--40536055	22	2.2	21	81	3	60	22	0	29	47	1.51
40536391--40536542	21	7.3	21	75	10	127	23	0	41	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536413--40536524	7	15.4	7	71	14	66	20	0	43	35	1.52
40541059--40541199	43	3.3	43	85	0	192	21	15	30	31	1.95
40546628--40546698	35	2.0	35	94	0	124	43	5	14	36	1.68
40547903--40547958	28	2.0	28	100	0	112	39	14	14	32	1.86
40550021--40550088	31	2.3	29	78	14	75	29	16	7	47	1.73
40550036--40550094	31	1.9	30	86	3	82	28	16	6	47	1.72
40555731--40555762	6	5.3	6	100	0	64	15	0	68	15	1.21
40572804--40572846	20	2.1	21	86	4	61	62	4	4	27	1.35
40572804--40572860	22	2.8	20	86	5	69	59	3	3	33	1.31
40573285--40573325	20	2.0	20	85	0	55	56	2	9	31	1.45
40573290--40573357	30	2.3	30	94	0	118	60	5	8	25	1.49
40573313--40573355	20	2.2	20	82	0	50	65	4	6	23	1.37
40580397--40580582	92	2.0	93	95	3	340	18	24	38	18	1.93
40611703--40611927	118	1.9	118	98	0	432	6	35	12	45	1.68
40611896--40611961	33	2.0	34	84	3	89	7	31	7	53	1.57
40613504--40613548	23	2.0	23	90	0	72	60	6	31	2	1.35
40615059--40615083	13	1.9	13	100	0	50	64	4	24	8	1.38
40616603--40616668	32	2.1	32	100	0	132	25	9	18	46	1.78
40621883--40621972	37	2.4	37	100	0	180	47	12	12	27	1.76
40622464--40622514	25	2.0	25	96	0	93	19	11	23	45	1.83
40624970--40625010	21	2.0	21	85	9	57	70	17	0	12	1.16
40626441--40626503	21	2.9	21	86	9	83	25	1	3	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40626789--40626822	18	1.9	17	88	5	50	55	2	11	29	1.50
40630065--40630395	113	3.0	110	83	4	396	24	20	24	30	1.99
40630626--40630688	31	2.0	32	87	3	92	19	1	41	38	1.61
40632639--40633517	52	16.9	52	99	0	1704	42	5	18	32	1.74
40641068--40641110	19	2.3	19	87	0	59	37	18	9	34	1.83
40642913--40642938	2	13.0	2	100	0	52	0	50	0	50	1.00
40645290--40645385	44	2.2	45	86	3	133	34	9	20	35	1.85
40648534--40648563	15	2.0	15	93	0	51	40	6	10	43	1.64
40648696--40648761	31	2.2	30	81	10	80	36	16	10	36	1.84
40665469--40665560	45	2.0	45	100	0	184	27	8	21	42	1.82
40675151--40675185	17	2.0	18	88	5	54	68	0	11	20	1.20
40685474--40685540	35	1.9	35	100	0	134	64	7	11	16	1.48
40691423--40691471	25	1.9	26	91	4	82	12	14	8	65	1.47
40702141--40702182	22	1.9	22	85	9	59	33	14	4	47	1.65
40716653--40716690	13	2.9	13	84	7	51	55	0	0	44	0.99
40718732--40718784	17	2.9	17	83	10	61	35	1	0	62	1.06
40718766--40718816	21	2.5	22	81	12	72	37	0	0	62	0.95
40727536--40727581	22	2.2	20	84	7	56	67	4	0	28	1.10
40727558--40727598	19	2.2	19	86	4	57	60	7	0	31	1.24
40732659--40732739	2	41.0	2	75	11	51	48	2	6	43	1.41
40732659--40732692	14	2.4	14	95	0	59	41	0	8	50	1.34
40732659--40732693	16	2.2	16	94	0	61	42	0	8	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40733827--40733881	27	2.0	28	82	10	69	9	3	36	50	1.51
40734197--40734465	132	2.0	132	91	1	432	25	24	19	30	1.98
40734452--40734752	95	3.2	95	91	1	469	30	23	15	29	1.96
40734805--40734929	62	2.0	62	87	0	178	20	23	23	33	1.97
40734938--40735326	44	8.8	45	67	13	200	25	23	25	26	2.00
40734924--40736189	87	14.5	87	88	1	1569	24	23	23	28	1.99
40737835--40737930	41	2.4	41	84	10	126	12	11	7	68	1.38
40742639--40742704	12	5.5	12	74	16	57	66	1	1	30	1.10
40743320--40743355	6	5.8	6	90	3	54	80	0	5	13	0.88
40743747--40743801	27	2.0	28	82	10	69	9	3	36	50	1.51
40745251--40745412	10	16.2	10	73	21	94	69	0	30	0	0.89
40745261--40745337	5	16.4	5	77	6	65	67	0	32	0	0.91
40745250--40745434	42	4.5	42	77	18	187	68	0	31	0	0.90
40745265--40745441	38	4.8	37	78	17	172	68	0	31	0	0.94
40745250--40745430	80	2.2	81	84	12	232	68	0	31	0	0.90
40745768--40746862	319	3.4	319	94	1	1881	49	9	11	29	1.70
40748637--40748673	18	2.1	18	94	0	65	10	40	8	40	1.70
40748640--40748681	18	2.3	18	87	0	57	16	47	4	30	1.67
40749378--40749402	3	8.3	3	100	0	50	68	0	0	32	0.90
40749645--40749735	27	3.4	27	89	3	139	21	34	24	19	1.97
40749986--40750023	15	2.4	17	91	8	62	13	15	2	68	1.32
40760128--40760194	30	2.5	28	86	13	88	44	10	0	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40760348--40760473	4	31.0	4	71	20	57	69	0	29	0	0.94
40760374--40760499	33	3.8	34	74	13	127	70	0	28	0	0.93
40760340--40760532	33	5.5	32	75	16	120	66	0	32	1	0.98
40760447--40760500	29	1.9	29	88	7	85	70	0	29	0	0.88
40760378--40760543	67	2.5	67	80	13	173	69	0	29	1	0.96
40760544--40760580	18	2.1	18	90	10	58	32	0	2	64	1.07
40765958--40765992	18	1.9	18	88	0	52	11	42	14	31	1.81
40766719--40766758	11	3.7	11	86	6	64	0	30	0	70	0.88
40766721--40766759	21	1.9	20	94	5	69	0	30	0	69	0.89
40766843--40766916	27	2.7	27	82	0	94	12	29	29	28	1.93
40766962--40767030	30	2.4	29	86	9	97	49	0	8	42	1.34
40766964--40767030	27	2.4	27	92	7	107	49	0	8	41	1.34
40767683--40767718	17	2.1	18	89	5	56	44	0	0	55	0.99
40767688--40768035	173	2.0	174	99	0	689	51	18	2	27	1.60
40784650--40784701	13	3.9	13	82	2	59	42	19	5	32	1.75
40786494--40786519	2	13.0	2	100	0	52	0	50	0	50	1.00
40793836--40793984	74	2.0	75	96	1	273	42	8	5	43	1.58
40794846--40794888	18	2.4	18	88	7	61	46	0	0	53	1.00
40796910--40796974	8	7.9	8	79	6	76	69	12	4	13	1.34
40796940--40796980	12	3.4	12	82	0	55	73	19	0	7	1.07
40797166--40797195	13	2.4	13	94	5	53	80	0	0	20	0.72
40800034--40800403	104	3.6	104	84	0	490	28	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40800382--40800580	69	2.9	69	81	3	204	29	16	24	30	1.96
40800576--40800607	16	2.0	16	100	0	64	31	12	25	31	1.92
40801445--40801474	15	2.0	15	100	0	60	66	20	6	6	1.38
40802692--40802859	86	2.0	85	92	3	284	24	17	11	46	1.81
40806284--40806350	34	1.9	35	87	3	100	47	13	7	31	1.70
40821217--40821259	16	2.7	16	85	0	59	30	25	4	39	1.76
40822714--40822753	21	2.0	19	90	9	62	12	10	2	75	1.15
40822714--40822746	11	3.1	11	82	8	50	15	9	3	72	1.21
40822797--40822861	32	2.0	32	85	5	87	18	13	6	61	1.52
40827405--40827438	16	2.1	17	88	5	52	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131