genome.fa.s9.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  128  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42228352--42228388	16	2.3	16	95	0	65	21	5	54	18	1.64
42249893--42249950	29	2.1	27	84	9	73	58	8	5	27	1.49
42251629--42251890	132	2.0	132	90	1	418	26	22	19	31	1.98
42252262--42252485	43	5.2	43	66	18	160	22	20	26	30	1.98
42252216--42252496	86	3.3	87	96	2	505	23	21	24	29	1.99
42252475--42252717	44	5.5	45	77	7	214	28	26	16	28	1.97
42252476--42252716	132	1.8	132	99	0	473	28	26	16	28	1.97
42253718--42253762	13	3.5	12	84	6	54	0	20	2	77	0.87
42253718--42253775	26	2.2	26	81	6	73	0	17	3	79	0.87
42253720--42253772	19	2.9	17	79	17	54	0	16	3	79	0.88
42254204--42254266	6	10.7	6	80	10	67	4	0	11	84	0.77
42254198--42254269	17	4.5	16	78	15	78	4	1	9	84	0.81
42261435--42261795	44	8.2	44	90	0	490	28	18	24	27	1.98
42282831--42282962	40	3.4	39	75	9	108	31	23	18	26	1.98
42283075--42283121	24	2.0	24	84	16	62	51	17	0	31	1.46
42286821--42286874	24	2.2	24	90	6	83	51	7	3	37	1.48
42288297--42288627	113	3.0	111	87	3	459	24	22	24	29	1.99
42288859--42288921	31	2.0	32	87	3	92	19	1	41	38	1.61
42288944--42289026	35	2.3	35	77	2	85	26	3	26	43	1.71
42299288--42299356	21	3.3	21	89	0	102	37	18	40	2	1.66
42299854--42300143	85	3.4	84	87	3	384	24	19	22	34	1.97
42299854--42300143	42	6.8	42	89	3	384	24	19	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42299878--42300121	127	1.9	127	94	0	425	24	19	22	34	1.97
42304002--42304035	17	1.9	18	88	5	52	58	20	2	17	1.51
42306305--42306980	51	13.5	51	84	4	851	29	24	17	28	1.97
42306350--42306433	41	2.0	41	88	0	123	26	26	20	27	1.99
42306221--42306980	307	2.6	290	84	5	926	29	24	17	28	1.97
42308177--42308312	55	2.5	56	83	5	172	11	25	18	44	1.84
42332728--42332851	60	2.1	60	98	0	239	49	6	8	36	1.58
42332751--42332848	25	3.1	34	64	31	90	48	7	10	33	1.64
42332887--42332911	13	1.9	13	100	0	50	56	0	12	32	1.36
42333065--42333156	46	2.0	46	82	16	111	52	4	5	38	1.45
42336172--42336227	27	2.1	27	89	0	85	33	23	23	19	1.97
42336750--42336861	27	4.2	27	72	6	84	27	10	25	35	1.89
42336770--42336907	27	5.1	27	79	13	142	31	8	21	38	1.84
42336762--42336907	54	2.7	54	83	5	163	31	9	20	38	1.85
42341597--42341660	33	1.9	34	84	9	87	29	23	21	25	1.99
42342019--42342324	27	11.4	27	88	1	409	19	19	19	40	1.92
42356552--42356679	38	3.3	39	62	19	95	44	4	3	46	1.42
42356555--42356713	79	2.0	79	98	0	309	43	6	5	45	1.51
42356555--42356678	41	3.1	41	60	19	98	45	4	4	45	1.43
42356555--42356735	79	2.3	79	91	1	256	44	6	5	43	1.53
42361331--42361391	30	2.0	30	100	0	122	36	24	3	36	1.72
42371679--42371717	14	2.6	15	88	8	53	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42381648--42381682	5	6.8	5	87	6	52	40	0	0	60	0.97
42381647--42381694	21	2.3	20	89	10	78	39	0	0	60	0.97
42382527--42382568	18	2.3	18	95	0	75	47	4	21	26	1.70
42386522--42386556	17	2.1	17	88	0	52	0	11	2	85	0.69
42394564--42394607	21	2.1	21	95	0	79	45	15	4	34	1.67
42395632--42395683	22	2.4	22	76	0	59	17	9	1	71	1.22
42397135--42397168	12	2.8	12	90	0	50	14	0	8	76	1.01
42398262--42398301	21	1.9	21	100	0	80	20	17	12	50	1.78
42398262--42398307	21	2.2	21	92	0	74	19	15	10	54	1.70
42412072--42412119	23	2.1	23	84	3	62	45	25	8	20	1.79
42412236--42412441	108	1.9	108	88	2	315	28	24	14	32	1.95
42421752--42421784	7	4.7	7	100	0	66	72	0	12	15	1.12
42422350--42422374	12	2.1	12	100	0	50	60	0	0	40	0.97
42426091--42426138	2	24.0	2	100	0	96	50	50	0	0	1.00
42426838--42426951	43	2.6	44	77	9	110	25	28	19	26	1.98
42432912--42433579	238	2.8	239	95	1	1171	19	17	21	42	1.90
42434427--42434500	6	12.3	6	94	0	130	20	16	13	50	1.78
42437257--42437303	20	2.3	20	85	7	60	8	12	2	76	1.09
42439898--42439969	21	3.4	21	73	7	74	16	18	16	48	1.81
42439834--42439964	42	3.1	42	79	0	136	17	20	16	45	1.85
42439893--42439993	42	2.4	42	83	0	121	16	20	17	44	1.87
42441051--42441090	19	2.1	19	85	0	53	45	0	12	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42443376--42443441	30	2.2	30	86	0	87	22	10	22	43	1.84
42443385--42443441	30	1.9	30	92	0	96	24	8	22	43	1.81
42443481--42443555	39	1.9	39	83	5	98	32	20	32	16	1.94
42447955--42447987	15	2.3	15	89	5	50	48	6	18	27	1.71
42453137--42453182	19	2.4	19	92	0	74	43	17	28	10	1.82
42460818--42460845	1	28.0	1	100	0	56	100	0	0	0	0.00
42464461--42464496	3	12.0	3	93	0	63	33	36	0	30	1.58
42464998--42465027	3	10.0	3	92	0	51	63	36	0	0	0.95
42477791--42477831	20	2.0	20	85	4	55	68	2	0	29	1.03
42479440--42479490	23	2.3	22	80	12	59	23	21	3	50	1.65
42480649--42480698	22	2.3	21	80	10	55	66	8	12	14	1.45
42486576--42486611	18	2.1	16	90	10	54	30	5	2	61	1.33
42511633--42511760	43	3.0	42	90	4	202	33	25	14	25	1.95
42511884--42511989	31	3.4	31	86	0	131	44	15	8	32	1.76
42517300--42517386	24	3.6	23	71	11	68	39	20	21	18	1.93
42517808--42517849	22	2.0	21	85	4	57	50	19	0	30	1.48
42522263--42522325	25	2.5	25	97	0	117	14	25	22	38	1.92
42522421--42522486	24	2.8	24	88	0	96	19	25	16	37	1.93
42522482--42522560	25	3.2	24	74	15	63	21	26	17	34	1.96
42522513--42522583	25	2.9	25	81	6	74	23	25	18	32	1.97
42528423--42528498	7	11.0	7	71	12	50	60	0	2	36	1.11
42528423--42528491	27	2.6	27	79	9	86	59	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42536357--42536399	18	2.4	18	81	11	52	44	2	11	41	1.53
42536720--42536801	25	3.3	25	79	6	87	39	10	14	35	1.82
42542337--42542384	18	2.7	18	78	9	53	43	2	14	39	1.57
42545773--42545805	16	2.1	16	94	0	57	45	0	3	51	1.16
42545875--42545923	23	2.1	24	88	7	75	69	6	2	22	1.21
42545964--42546014	23	2.2	24	86	10	70	56	3	0	39	1.18
42545964--42546014	24	2.2	23	86	10	68	56	3	0	39	1.18
42545953--42546015	24	2.5	24	78	19	67	57	4	0	38	1.20
42547613--42547652	16	2.5	16	79	0	53	27	22	2	47	1.64
42547866--42547976	49	2.2	49	84	6	134	35	2	6	55	1.39
42564103--42564150	25	1.9	25	87	8	71	16	20	14	47	1.82
42577489--42577633	41	3.5	41	81	5	141	26	26	19	27	1.99
42580495--42580787	45	6.5	45	68	13	127	27	22	21	28	1.99
42580633--42580785	44	3.5	44	77	4	130	28	22	20	28	1.98
42580664--42580921	45	5.7	45	70	11	152	28	19	19	32	1.96
42580949--42581633	50	13.7	50	73	0	510	25	18	22	33	1.97
42580946--42581648	100	7.0	100	89	0	953	25	19	22	33	1.97
42581670--42581713	21	2.1	21	86	0	61	20	34	6	38	1.79
42582744--42582779	13	2.8	13	91	4	56	0	11	2	86	0.68
42588276--42588341	26	2.5	26	77	0	69	36	15	6	42	1.71
42588719--42588791	34	2.3	30	83	9	92	64	1	0	34	1.02
42588767--42588811	9	4.7	9	79	15	54	68	0	2	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42592038--42592106	23	3.0	23	80	4	68	43	23	14	18	1.87
42592074--42592146	23	3.2	22	82	5	83	43	17	10	27	1.83
42592364--42592556	104	1.9	104	88	0	296	28	27	13	29	1.95
42594147--42594182	3	12.0	3	93	0	63	69	0	30	0	0.89
42594282--42594331	20	2.4	21	86	3	66	0	22	0	78	0.76
42594541--42594580	3	13.3	3	94	0	71	0	30	0	70	0.88
42594698--42594737	20	2.0	20	90	0	62	32	5	25	37	1.77
42595227--42595335	9	11.4	9	71	14	69	68	0	4	25	1.14
42595250--42595335	20	4.4	18	75	16	73	68	1	4	25	1.16
42595513--42595573	28	2.1	29	87	3	88	60	6	0	32	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131