genome.fa.s9.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  90  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30183298--30183332	15	2.3	15	90	9	54	37	11	14	37	1.82
30185068--30185246	86	2.1	87	97	1	342	44	10	12	33	1.75
30197594--30197638	10	4.9	9	79	15	56	77	0	20	2	0.87
30197607--30197641	18	1.9	18	94	0	61	77	0	17	5	0.96
30198836--30199113	41	6.5	41	79	8	279	20	19	26	33	1.97
30201991--30202717	23	31.8	23	74	10	456	30	5	22	40	1.77
30201991--30202717	137	5.3	137	94	0	1215	30	5	22	40	1.77
30202106--30202714	114	5.3	114	74	9	360	31	5	22	40	1.78
30202769--30202946	23	7.8	23	74	8	148	32	5	21	41	1.75
30202768--30202946	46	3.9	46	74	10	177	31	5	21	41	1.75
30202289--30202944	114	5.7	114	71	11	364	30	7	21	40	1.80
30203619--30203797	43	4.2	43	85	4	209	20	18	29	32	1.96
30203639--30203797	86	1.8	86	86	2	230	20	19	28	30	1.97
30203776--30203823	23	2.1	23	88	7	71	16	20	25	37	1.93
30203733--30203863	66	2.0	66	85	5	176	20	17	27	34	1.95
30214870--30214914	24	1.9	24	86	4	65	8	42	6	42	1.62
30222644--30222775	30	4.4	30	72	3	97	36	20	5	37	1.75
30223468--30223516	7	7.4	7	80	15	52	79	0	18	2	0.83
30223826--30223868	14	3.1	14	86	6	52	83	0	16	0	0.64
30223842--30223871	7	4.3	7	100	0	60	86	0	13	0	0.57
30223826--30223875	24	2.1	24	88	0	73	84	0	16	0	0.63
30224373--30224419	18	2.5	20	90	10	73	21	10	12	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30224388--30224450	29	2.2	28	85	2	81	11	11	14	63	1.52
30224464--30224724	17	14.5	18	73	12	187	30	15	8	44	1.77
30224463--30224642	35	5.1	35	76	12	136	28	16	8	46	1.77
30224464--30224559	18	5.4	18	80	7	99	31	17	8	42	1.79
30224499--30224633	18	7.6	17	76	19	100	32	16	6	44	1.73
30224560--30224643	18	4.5	19	75	11	75	26	14	8	51	1.70
30224464--30224725	36	7.3	36	75	12	150	30	15	8	44	1.77
30224787--30224829	22	2.0	22	86	9	61	39	4	11	44	1.62
30224809--30224847	19	2.1	19	90	4	62	35	7	10	46	1.67
30231546--30231575	15	2.0	15	93	0	51	30	13	36	20	1.90
30234841--30234867	14	1.9	14	100	0	54	51	18	7	22	1.70
30234867--30234910	22	2.0	22	81	0	52	54	9	2	34	1.44
30235593--30235627	11	3.1	12	92	8	56	0	20	0	80	0.72
30237808--30237845	19	2.0	19	100	0	76	47	0	15	36	1.46
30238383--30238413	16	2.0	15	93	6	53	58	0	0	41	0.98
30238473--30238530	29	2.0	29	83	6	73	50	10	6	32	1.63
30250154--30250182	3	9.7	3	100	0	58	0	34	0	65	0.93
30254471--30254495	12	2.1	12	100	0	50	8	24	16	52	1.70
30266714--30266742	12	2.3	13	94	5	51	65	6	6	20	1.40
30281154--30281314	80	2.0	80	96	0	295	30	13	14	41	1.84
30287550--30287618	34	2.0	34	94	0	120	18	4	20	56	1.58
30288485--30288817	184	1.8	185	97	0	632	45	13	13	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30288799--30288835	15	2.5	15	100	0	74	45	8	27	18	1.77
30296113--30296150	12	3.2	12	96	0	67	7	31	39	21	1.82
30301666--30301726	21	2.8	21	73	9	52	55	8	3	32	1.45
30305384--30305412	12	2.3	13	94	5	51	20	6	6	65	1.40
30315226--30315431	41	5.0	41	84	1	270	33	17	29	19	1.95
30317489--30318356	434	2.0	434	98	0	1682	30	22	9	38	1.86
30318307--30318426	45	2.7	46	84	8	151	35	29	17	18	1.94
30318413--30318437	11	2.3	11	100	0	50	44	48	8	0	1.32
30318368--30318483	56	2.1	56	90	3	180	39	32	12	15	1.84
30330062--30330101	14	2.7	15	84	7	55	37	5	0	57	1.21
30336060--30336103	22	2.0	22	86	0	61	27	9	13	50	1.72
30338360--30339700	670	2.0	670	98	0	2619	30	17	23	28	1.97
30339984--30340044	20	3.1	20	81	9	72	42	1	4	50	1.33
30339987--30340051	20	3.3	19	80	8	69	36	1	4	56	1.29
30346162--30346196	13	2.7	13	100	0	70	28	8	11	51	1.67
30349622--30349807	51	3.7	49	80	8	214	24	17	27	30	1.97
30349628--30349812	101	1.8	102	91	3	311	24	17	26	31	1.97
30349821--30349909	45	2.0	45	90	0	142	24	17	23	33	1.96
30349944--30349997	23	2.5	20	78	21	56	42	0	22	35	1.54
30354623--30354659	18	2.1	18	90	10	58	45	10	0	43	1.39
30357201--30357230	15	2.0	15	93	0	51	56	13	13	16	1.67
30362478--30362640	46	3.5	46	80	5	177	32	23	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30365675--30365731	25	2.3	25	84	0	69	28	17	22	31	1.97
30365820--30365967	40	3.7	39	79	4	145	43	4	16	35	1.69
30365819--30365996	80	2.2	80	83	5	218	43	4	16	34	1.69
30365851--30365989	40	3.5	40	79	3	145	43	5	15	35	1.69
30365958--30366008	27	1.9	26	84	11	68	45	3	15	35	1.65
30366612--30366645	14	2.4	14	90	0	50	20	2	32	44	1.67
30373003--30373048	21	2.2	21	96	0	83	17	30	13	39	1.87
30380086--30380138	21	2.6	21	96	3	99	13	37	28	20	1.90
30380086--30380146	21	3.0	21	90	2	70	18	37	24	19	1.94
30383751--30383825	31	2.4	31	84	6	107	18	0	25	56	1.42
30383770--30383857	8	11.2	8	75	18	69	17	0	29	53	1.44
30383825--30383854	14	2.1	14	93	0	51	16	0	36	46	1.47
30383776--30383851	39	1.9	40	83	2	100	17	0	28	53	1.43
30385771--30385815	22	2.0	22	83	8	56	40	4	0	55	1.20
30388055--30388108	17	3.2	17	69	27	51	24	5	11	59	1.53
30389011--30389100	32	2.8	32	78	10	101	46	7	8	36	1.64
30391342--30391382	18	2.4	17	83	4	55	60	0	12	26	1.31
30400522--30400639	59	2.0	59	100	0	236	33	15	20	30	1.93
30404052--30404106	20	2.7	19	81	13	56	45	1	7	45	1.41
30415250--30415311	12	5.8	11	71	17	51	61	0	0	38	0.96
30415262--30415302	7	5.9	7	97	0	73	68	0	0	31	0.90
30415255--30415311	21	2.7	21	76	13	71	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30425918--30425966	24	2.0	24	92	7	82	20	16	6	57	1.60
30428521--30428557	18	2.1	18	89	0	56	32	10	10	45	1.74
30433598--30433640	22	2.0	22	86	13	63	6	23	18	51	1.70
30450505--30450531	10	2.7	10	100	0	54	14	11	18	55	1.68
30450796--30450837	22	1.9	22	85	0	57	23	33	14	28	1.94
30454800--30454872	11	6.8	11	69	25	50	63	8	1	27	1.31
30454847--30454957	3	36.3	3	70	25	65	63	1	4	30	1.25
30454876--30454959	12	6.9	12	75	16	75	61	0	4	33	1.17
30454876--30454918	11	3.8	11	87	3	59	60	0	2	37	1.10
30454878--30454931	29	2.0	29	85	10	78	61	0	3	35	1.14
30454847--30454957	15	8.1	14	78	18	94	63	1	4	30	1.25
30454875--30454959	37	2.4	37	81	12	101	62	0	4	32	1.16
30454981--30455021	14	2.9	14	88	3	64	58	0	0	41	0.98
30459783--30459825	18	2.4	18	84	0	59	18	23	20	37	1.94
30468685--30468745	26	2.3	27	80	8	72	42	11	13	32	1.79
30479224--30479357	66	2.0	65	83	8	164	42	17	25	14	1.87
30479625--30479808	43	4.3	42	80	2	179	29	23	17	29	1.97
30479625--30479808	86	2.2	85	81	3	208	29	23	17	29	1.97
30482317--30482390	35	2.1	35	97	0	139	25	10	25	37	1.88
30484194--30484236	19	2.3	19	84	8	52	48	16	16	18	1.81
30484595--30484670	31	2.4	31	86	2	107	39	2	3	53	1.33
30484622--30484670	16	3.1	16	71	26	50	36	4	2	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30493205--30493280	9	8.4	9	89	0	80	28	36	2	31	1.71
30493214--30493280	3	22.3	3	90	0	107	29	35	1	32	1.67
30494681--30494764	39	2.2	39	97	2	161	52	2	20	25	1.58
30499928--30499953	2	13.0	2	100	0	52	50	0	50	0	1.00
30499696--30500094	194	2.1	190	88	4	579	40	16	16	26	1.90
30500767--30500796	8	3.6	8	95	4	51	10	3	0	86	0.67
30511349--30511536	51	3.7	50	76	9	184	31	27	17	22	1.97
30511350--30511534	101	1.8	101	83	5	248	31	27	17	23	1.97
30512771--30512815	17	2.6	17	92	0	81	57	13	0	28	1.36
30514230--30514311	42	2.0	42	85	4	112	30	24	14	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131