genome.fa.s9.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  130  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42888264--42888299	18	2.0	18	88	0	54	33	22	16	27	1.95
42888990--42889034	22	2.1	21	83	4	54	22	33	0	44	1.53
42894705--42894762	21	2.7	19	80	19	62	55	1	1	41	1.20
42894716--42894755	21	1.9	21	90	10	64	55	0	2	42	1.13
42894765--42894826	21	2.9	22	76	9	67	66	4	3	25	1.27
42895861--42895890	15	2.1	15	93	6	53	60	0	0	40	0.97
42896220--42896294	35	2.1	36	83	9	93	60	0	0	40	0.97
42896991--42897029	3	13.0	3	89	10	62	0	30	0	69	0.89
42905080--42905146	31	2.2	29	81	7	71	43	5	5	44	1.53
42905532--42905579	21	2.3	21	82	7	53	29	2	2	66	1.14
42911384--42911439	26	2.2	26	86	0	76	64	5	0	30	1.16
42914448--42914473	13	2.0	13	100	0	52	7	23	38	30	1.83
42918271--42918309	21	1.9	19	85	10	51	25	2	2	69	1.14
42926395--42926733	169	2.0	170	99	0	671	46	12	8	33	1.71
42935257--42935291	19	1.9	17	88	11	52	28	8	0	62	1.24
42940345--42940391	23	2.0	23	87	0	67	51	0	0	48	1.00
42940676--42941085	41	10.1	41	81	2	416	21	19	26	31	1.97
42940676--42941018	81	4.2	82	84	1	402	20	19	28	31	1.97
42940675--42941085	122	3.4	121	83	3	466	21	19	26	32	1.97
42941002--42941077	39	1.9	39	81	5	91	26	19	17	36	1.94
42941260--42941299	14	2.9	14	84	0	53	17	0	32	50	1.47
42941318--42941365	22	2.2	21	81	3	60	20	0	31	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42941649--42941686	14	2.7	15	84	12	53	28	0	28	42	1.56
42941945--42941972	14	2.0	14	100	0	56	50	0	0	50	1.00
42942113--42942342	83	2.8	83	87	2	345	42	15	13	28	1.85
42949421--42949872	225	2.0	225	100	0	904	32	20	14	32	1.93
42951310--42951345	7	5.4	7	93	6	58	72	0	0	27	0.85
42951310--42951345	13	2.7	14	87	12	58	72	0	0	27	0.85
42951311--42951356	6	7.7	6	95	4	60	71	0	0	28	0.86
42956324--42956355	12	2.6	13	90	9	50	50	15	0	34	1.45
42960067--42960098	12	2.6	13	90	9	50	50	15	0	34	1.45
42960349--42961063	87	8.2	87	100	0	1430	48	8	4	39	1.53
42965762--42965802	6	6.8	6	100	0	82	0	14	0	85	0.60
42967677--42967706	12	2.5	12	88	0	51	33	10	50	6	1.62
42980078--42980144	31	2.2	30	81	7	73	56	1	4	37	1.29
42980514--42980542	14	2.0	15	93	6	51	3	13	0	82	0.79
42982581--42982609	7	4.1	7	100	0	58	13	0	13	72	1.13
42987123--42987182	30	2.0	30	87	6	86	28	5	11	55	1.57
42987708--42988355	170	3.8	170	85	1	800	39	7	18	35	1.78
42993178--42993231	15	3.7	14	78	7	63	42	0	1	55	1.10
42993208--42993261	18	2.8	19	77	5	56	44	1	0	53	1.11
42996205--42996549	87	4.0	87	87	0	467	29	16	17	37	1.91
42998398--42998434	19	1.9	19	88	0	56	21	32	2	43	1.67
43005410--43005595	88	2.1	88	84	2	248	26	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43005766--43005861	50	1.9	50	84	0	129	28	19	26	26	1.99
43005605--43006018	167	2.5	167	84	1	508	28	18	26	26	1.98
43005946--43006526	50	11.6	50	66	7	275	29	20	25	24	1.99
43005948--43006559	100	6.1	99	85	4	746	29	20	24	24	1.99
43011356--43011401	24	1.9	24	86	0	65	43	13	10	32	1.78
43011624--43011657	11	2.9	12	86	8	52	50	20	17	11	1.77
43019578--43019608	13	2.4	13	94	0	53	32	9	0	58	1.31
43019979--43020116	45	3.1	45	92	3	217	34	24	6	34	1.81
43020100--43020153	16	3.4	16	82	10	65	29	24	3	42	1.72
43021518--43022208	87	7.9	87	90	1	1053	26	16	19	36	1.93
43022827--43022870	22	2.0	22	81	0	52	25	11	15	47	1.79
43029088--43029116	3	9.7	3	100	0	58	34	0	0	65	0.93
43029126--43029157	3	10.7	3	100	0	64	0	34	31	34	1.58
43029156--43029188	3	11.0	3	100	0	66	33	33	0	33	1.58
43029822--43029849	14	2.0	14	100	0	56	35	7	7	50	1.57
43031002--43031053	27	1.9	27	100	0	104	21	11	23	44	1.84
43031002--43031061	27	2.4	25	91	8	95	18	11	21	48	1.80
43031846--43032096	127	2.0	126	92	0	412	30	10	18	40	1.84
43034414--43034620	53	4.0	53	92	4	343	27	18	25	28	1.98
43034414--43034620	104	2.0	103	94	0	360	27	18	25	28	1.98
43042104--43042165	23	2.7	22	76	11	63	38	1	4	54	1.31
43042880--43042907	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43044109--43044430	109	3.0	107	88	4	461	35	17	16	31	1.92
43044509--43044545	18	2.0	19	89	5	58	67	13	2	16	1.34
43044560--43044595	4	8.8	4	96	3	63	75	2	0	22	0.94
43044910--43044954	16	2.7	17	83	12	58	66	0	0	33	0.92
43044903--43044954	27	2.0	25	85	7	68	65	0	1	32	1.04
43044910--43044954	18	2.6	18	86	13	60	66	0	0	33	0.92
43044848--43044975	67	1.9	67	80	6	152	54	3	7	34	1.45
43046114--43046150	20	1.9	18	89	10	56	72	5	13	8	1.24
43046144--43046176	16	2.1	16	94	0	57	60	21	6	12	1.53
43048768--43048872	52	2.0	52	90	0	165	20	28	25	25	1.99
43049953--43050038	24	3.6	23	78	7	82	33	22	27	16	1.95
43049972--43050112	72	1.9	73	80	7	162	31	24	26	17	1.97
43050075--43050164	26	3.5	26	80	4	94	32	25	25	16	1.96
43050630--43050654	5	5.0	5	100	0	50	40	20	0	40	1.52
43052280--43052365	24	3.6	23	78	7	82	33	22	27	16	1.95
43052299--43052439	72	1.9	73	80	7	162	31	24	26	17	1.97
43052402--43052491	26	3.5	26	80	4	94	32	25	25	16	1.96
43052957--43052981	5	5.0	5	100	0	50	40	20	0	40	1.52
43053729--43053768	21	2.0	20	85	5	53	35	20	5	40	1.74
43058735--43058959	109	2.1	110	97	2	427	30	23	24	22	1.99
43063409--43063439	14	2.1	14	94	5	53	83	0	16	0	0.64
43071120--43071150	14	2.1	14	94	5	53	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43073768--43073815	23	2.1	23	100	0	96	27	18	20	33	1.96
43081161--43081186	2	13.0	2	100	0	52	50	50	0	0	1.00
43085752--43085811	30	2.0	29	83	3	75	38	13	1	46	1.53
43086483--43087029	109	5.0	110	92	2	809	30	17	18	34	1.93
43086483--43087029	219	2.5	218	90	2	839	30	17	18	34	1.93
43089929--43089976	19	2.5	19	83	9	62	77	0	18	4	0.93
43089929--43089976	6	7.7	6	88	9	60	77	0	18	4	0.93
43091628--43092686	86	12.5	86	90	3	1646	29	22	24	23	1.99
43091628--43092686	336	3.1	337	90	3	1591	29	22	24	23	1.99
43091590--43092686	422	2.6	422	94	1	1900	29	22	24	23	1.99
43092645--43092727	41	2.0	41	97	0	157	38	21	18	21	1.93
43092563--43092813	127	2.0	127	91	0	412	32	22	22	22	1.98
43092690--43094171	86	17.2	86	93	0	2428	29	23	23	23	1.99
43092477--43092899	213	2.0	213	92	0	702	31	23	23	22	1.99
43092988--43093210	43	5.2	43	63	16	138	26	24	25	23	2.00
43094193--43094791	44	13.7	44	74	6	396	29	21	24	24	1.99
43094191--43094614	131	3.2	131	93	1	704	29	22	24	23	1.99
43094418--43094749	175	1.9	177	84	2	445	29	21	25	23	1.99
43094191--43094791	264	2.3	261	81	5	676	29	21	24	24	1.99
43097107--43097364	109	2.4	109	83	4	306	32	14	17	35	1.90
43099377--43099431	23	2.3	25	81	12	78	52	1	0	45	1.11
43099596--43099630	18	2.0	17	88	5	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43102873--43102921	3	16.3	3	91	0	80	38	0	0	61	0.96
43105656--43105701	22	2.0	23	84	12	60	13	4	13	69	1.33
43109054--43110198	132	8.7	131	90	1	1686	28	23	18	29	1.98
43109077--43110198	527	2.1	529	90	1	1754	28	23	18	29	1.98
43109098--43110142	44	23.8	44	65	10	326	28	23	18	29	1.97
43117042--43117092	11	5.0	10	81	11	50	82	3	5	7	0.94
43117043--43117094	15	3.4	14	77	15	50	80	3	7	7	1.00
43118113--43118149	19	1.9	19	88	0	56	54	0	2	43	1.14
43119849--43119913	30	2.2	30	88	0	103	23	33	26	16	1.96
43122280--43122351	27	2.7	27	86	4	92	27	29	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131