genome.fa.s9.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  53  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17450980--17451017	18	2.2	18	90	4	60	0	18	0	81	0.69
17450974--17451020	24	1.9	25	91	4	78	0	21	0	78	0.75
17456226--17456294	23	3.2	22	78	17	81	40	17	5	36	1.74
17456216--17456273	22	2.6	22	86	7	82	44	17	3	34	1.65
17456252--17456306	21	2.7	21	91	5	87	40	14	9	36	1.78
17457003--17457064	21	3.1	21	79	6	76	30	33	1	33	1.68
17457465--17457664	97	2.1	97	93	1	339	9	25	19	46	1.79
17472203--17472238	18	1.9	18	88	5	54	22	16	11	50	1.77
17474324--17474396	36	2.0	36	100	0	146	47	13	10	27	1.76
17481307--17481386	42	1.9	42	89	5	126	32	16	23	27	1.96
17485637--17485884	130	1.9	129	86	2	354	29	23	15	31	1.95
17490983--17491010	13	2.2	13	100	0	56	75	0	0	25	0.81
17492025--17492086	5	12.2	5	78	10	63	40	14	22	22	1.90
17494014--17494128	4	29.2	4	77	10	58	0	62	1	35	1.06
17494019--17494119	39	2.6	39	93	1	166	0	65	1	32	1.04
17494014--17494127	8	14.5	8	82	10	110	0	63	1	35	1.05
17494370--17494438	30	2.3	29	83	11	86	47	8	8	34	1.65
17497661--17497704	3	13.3	3	82	17	52	29	0	40	29	1.57
17497664--17497705	7	6.1	7	94	5	77	28	0	42	28	1.56
17498577--17498627	3	17.0	3	100	0	102	33	0	33	33	1.58
17504100--17504352	124	2.0	124	98	0	488	41	12	13	32	1.82
17510749--17511022	27	10.1	27	77	10	161	41	17	17	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17510749--17511002	54	4.7	53	77	13	198	42	17	16	23	1.89
17510749--17510943	81	2.4	81	79	8	227	43	16	16	24	1.87
17510749--17510984	81	2.9	81	75	12	225	42	18	16	23	1.89
17511044--17511114	24	3.0	24	83	4	81	28	7	22	42	1.79
17511045--17511132	24	3.6	25	78	7	76	27	6	21	44	1.77
17511257--17511312	26	2.2	26	86	0	76	12	23	32	32	1.92
17511300--17511456	64	2.5	64	83	0	206	21	19	21	37	1.94
17511303--17511440	32	4.3	32	83	2	161	20	19	22	37	1.94
17511464--17511526	22	2.8	22	74	11	58	17	19	17	46	1.85
17511689--17511773	28	3.0	28	89	0	125	22	22	23	31	1.98
17514856--17515023	42	4.0	42	83	6	198	29	20	23	26	1.99
17534596--17535105	42	12.2	42	85	1	585	22	18	22	36	1.95
17535561--17535772	3	70.7	3	100	0	424	33	33	0	33	1.58
17535893--17535936	3	14.7	3	100	0	88	68	31	0	0	0.90
17536217--17536285	32	2.2	31	77	7	77	39	5	5	49	1.51
17539344--17539383	21	1.9	21	84	0	53	42	5	45	7	1.54
17545056--17545477	139	3.1	136	84	7	548	45	5	8	40	1.58
17547930--17547998	30	2.3	30	94	0	120	20	37	26	15	1.93
17548509--17548643	41	3.3	41	89	0	207	34	15	27	22	1.95
17554559--17554801	51	4.8	50	76	7	233	30	27	15	25	1.96
17554551--17554800	101	2.5	100	83	7	310	30	28	15	26	1.96
17557804--17557959	27	5.8	27	81	7	158	42	18	17	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17557804--17557961	54	2.9	54	85	0	210	43	18	17	20	1.89
17557951--17558259	27	11.4	27	87	0	420	32	17	24	25	1.97
17558505--17558556	26	2.0	26	84	0	68	15	21	28	34	1.94
17558550--17558735	32	5.8	32	88	0	246	23	20	20	35	1.96
17560477--17560737	131	2.0	132	89	0	398	30	20	14	34	1.93
17560793--17560837	15	3.1	15	93	3	74	20	26	0	53	1.46
17564312--17564400	40	2.2	40	85	0	115	14	31	19	34	1.92
17564312--17564427	20	5.8	20	72	4	81	13	28	20	37	1.91
17572207--17572236	15	1.9	16	93	6	53	43	0	0	56	0.99
17575047--17575094	23	2.1	23	92	0	78	39	22	10	27	1.87
17577111--17577139	15	1.9	15	100	0	58	41	3	27	27	1.72
17579479--17579512	17	1.9	18	88	5	52	41	20	14	23	1.89
17583007--17583046	21	1.9	21	89	0	62	10	40	0	50	1.36
17591327--17591363	18	2.0	19	89	5	58	51	0	43	5	1.24
17599778--17599845	34	2.0	34	94	0	118	26	29	0	44	1.55
17603707--17603901	81	2.4	80	82	3	230	30	14	26	28	1.95
17605695--17605740	20	2.3	21	85	11	69	41	23	28	6	1.79
17614419--17614472	28	2.0	28	85	3	74	42	9	1	46	1.46
17620976--17621005	16	1.9	15	93	6	51	33	6	6	53	1.53
17623366--17623395	12	2.4	13	94	5	53	66	6	6	20	1.38
17629336--17629375	19	2.1	19	86	9	55	37	10	15	37	1.80
17638406--17639024	309	2.0	309	100	0	1238	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17645672--17645812	56	2.6	54	89	6	209	26	19	30	23	1.98
17661094--17661127	3	11.3	3	100	0	68	64	0	0	35	0.94
17663886--17663934	26	1.9	25	91	4	80	18	36	6	38	1.76
17664646--17664701	29	2.0	27	82	6	67	48	7	10	33	1.65
17676381--17676409	2	15.0	2	92	7	51	48	0	0	51	1.00
17679466--17679554	45	2.0	45	95	0	160	28	28	14	29	1.95
17679910--17679944	15	2.3	15	90	0	52	45	0	2	51	1.16
17681203--17681256	3	18.0	3	96	0	90	62	0	3	33	1.12
17685359--17685421	9	6.8	9	73	12	56	33	4	1	60	1.27
17686072--17686109	20	1.9	20	89	10	60	31	31	5	31	1.80
17686092--17686159	31	2.2	31	87	7	95	42	23	11	22	1.86
17686341--17686386	12	3.9	12	78	13	51	6	30	0	63	1.20
17688954--17689007	27	2.0	27	100	0	108	48	7	3	40	1.49
17689728--17689810	30	2.8	29	81	3	76	31	1	6	61	1.28
17689742--17689829	12	7.2	12	71	19	58	32	1	4	61	1.24
17695123--17695163	8	5.2	8	77	16	50	36	2	2	58	1.24
17696049--17696090	17	2.4	18	88	4	59	54	4	2	38	1.34
17696049--17696119	18	4.1	17	76	5	70	52	4	4	39	1.41
17696202--17696248	16	3.0	16	81	12	53	34	2	6	57	1.36
17702493--17702539	19	2.5	20	75	10	53	12	19	4	63	1.44
17705651--17705777	39	3.3	39	83	2	139	43	17	4	34	1.70
17712443--17712540	27	3.6	27	87	5	144	29	19	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17716055--17716138	31	2.7	31	87	9	127	30	4	13	51	1.61
17716502--17716548	3	15.7	3	100	0	94	65	0	0	34	0.93
17716881--17716921	3	13.7	3	100	0	82	65	0	0	34	0.93
17729913--17730002	28	3.1	28	79	6	83	24	14	23	37	1.92
17734285--17734327	18	2.5	17	82	14	52	46	11	13	27	1.78
17734285--17734337	17	3.1	16	82	15	61	43	13	13	30	1.82
17734956--17735066	11	10.3	11	74	20	67	1	21	0	76	0.88
17734951--17735014	15	4.4	14	75	13	58	3	17	0	79	0.85
17734917--17735016	28	3.7	27	79	17	100	5	16	1	78	0.99
17734956--17735058	43	2.4	42	82	14	113	1	20	0	77	0.86
17734899--17735066	22	8.1	21	72	20	90	3	18	1	76	0.99
17735897--17735927	5	6.4	5	92	7	55	83	16	0	0	0.64
17736114--17736549	76	5.7	75	86	5	497	35	19	15	29	1.93
17748249--17748304	17	3.3	17	82	7	69	46	10	14	28	1.78
17749286--17749348	3	21.0	3	93	0	108	66	0	1	31	1.01
17751067--17751390	44	7.4	44	65	10	178	26	23	20	29	1.99
17751227--17751418	44	4.4	44	67	7	113	26	23	19	30	1.98
17751068--17751446	132	2.9	132	96	0	686	26	23	19	29	1.98
17751515--17751657	44	3.2	44	65	17	125	24	20	24	30	1.98
17751452--17751659	87	2.4	87	89	2	301	24	20	25	30	1.98
17756274--17756309	17	2.1	17	89	0	54	44	22	16	16	1.86
17758058--17758111	3	18.0	3	92	0	90	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17759102--17759239	7	19.9	7	75	13	67	0	23	0	75	0.85
17759097--17759140	23	2.0	22	86	4	61	4	20	0	75	0.98
17759100--17759208	8	14.4	7	70	21	69	0	21	0	77	0.82
17759073--17759234	27	5.9	27	78	16	120	1	21	0	75	0.93
17759101--17759208	34	3.1	34	82	8	119	0	21	0	77	0.82
17759101--17759239	62	2.2	63	82	12	180	0	23	0	75	0.85
17759134--17759241	11	10.0	11	76	17	70	0	25	0	75	0.81
17759342--17759395	18	2.9	19	79	17	69	0	35	1	62	1.06
17759955--17760014	29	2.1	29	87	6	86	46	5	15	33	1.67
17767137--17767244	42	2.6	42	89	2	155	32	12	17	37	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131