genome.fa.s9.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  62  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20276162--20276227	20	3.3	20	76	0	60	19	16	21	42	1.89
20276170--20276234	20	3.2	20	73	0	67	16	18	23	41	1.90
20280386--20280522	27	5.1	26	80	3	130	36	17	20	25	1.94
20290096--20290150	16	3.6	16	73	14	53	38	18	18	25	1.93
20290070--20290172	29	3.6	29	83	0	116	36	22	16	24	1.94
20302358--20302412	27	2.0	27	96	0	101	30	20	16	32	1.94
20315589--20315678	26	3.4	26	90	4	128	31	26	20	22	1.98
20315576--20315687	26	4.2	27	80	10	97	28	26	21	23	1.99
20329821--20329854	14	2.6	14	90	9	54	38	23	14	23	1.92
20329777--20329908	51	2.6	51	80	4	151	30	27	17	25	1.97
20335619--20335665	17	2.8	17	77	3	51	55	12	10	21	1.67
20336020--20336045	8	3.2	8	100	0	52	88	0	0	11	0.52
20336036--20336078	16	2.7	16	82	7	52	65	6	0	27	1.18
20341016--20341051	13	2.8	13	95	0	63	2	33	47	16	1.61
20342520--20342593	25	3.0	25	91	0	121	33	12	27	27	1.92
20347337--20347474	44	3.1	44	82	12	199	31	20	20	27	1.97
20347319--20347459	46	3.1	46	82	11	209	32	17	21	27	1.96
20350653--20350682	13	2.2	14	94	5	53	43	13	13	30	1.82
20350784--20350814	8	3.8	8	95	4	53	64	0	0	35	0.94
20350877--20350911	17	2.1	17	88	0	52	22	37	2	37	1.69
20352396--20352478	31	2.7	31	94	0	139	34	14	27	22	1.93
20353782--20353811	6	4.8	6	95	4	51	16	30	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20354021--20354066	23	1.9	24	82	8	58	26	15	2	56	1.50
20358333--20358434	40	2.5	40	83	0	123	40	19	25	14	1.90
20358333--20358390	20	2.9	20	72	10	55	39	17	25	17	1.91
20359382--20359414	16	2.0	17	88	5	50	30	0	6	63	1.18
20368923--20368975	26	2.0	26	100	0	106	22	11	28	37	1.89
20370591--20370682	26	3.5	26	83	1	103	30	26	10	32	1.90
20373633--20373696	29	2.2	29	91	0	101	23	15	20	40	1.90
20373672--20373785	57	2.0	58	81	5	133	25	19	15	39	1.91
20374357--20374386	15	1.9	16	93	6	53	43	3	0	53	1.17
20377449--20377635	92	2.0	93	98	1	367	48	6	4	40	1.50
20377681--20377739	29	2.0	30	83	3	75	50	13	3	32	1.58
20379767--20380117	142	2.5	142	86	1	501	52	11	13	22	1.73
20381893--20381932	17	2.2	17	86	8	53	55	15	0	30	1.41
20381944--20381979	3	12.3	3	94	5	65	66	0	0	33	0.92
20384137--20384216	20	3.9	21	73	21	71	52	2	3	41	1.33
20390704--20390749	19	2.5	19	89	3	67	17	19	43	19	1.88
20401744--20402055	89	3.5	88	80	7	335	23	23	14	39	1.91
20401744--20402023	119	2.4	119	86	0	380	22	23	13	40	1.90
20401744--20402055	30	10.5	30	78	6	242	23	23	14	39	1.91
20401784--20402078	149	2.0	147	84	7	382	23	24	13	38	1.91
20401831--20402086	60	4.3	60	71	6	151	23	24	14	37	1.92
20403831--20404048	109	2.0	109	99	0	427	40	21	13	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20406342--20406422	23	3.4	23	74	6	74	38	18	11	32	1.86
20406371--20406591	69	3.2	69	90	1	327	43	19	11	25	1.84
20407401--20407557	41	3.8	41	86	3	217	33	28	19	18	1.96
20409997--20410021	13	1.9	13	100	0	50	32	0	0	68	0.90
20416353--20416384	15	2.1	15	94	0	55	68	9	6	15	1.36
20423715--20423852	71	1.9	71	82	8	174	26	30	0	42	1.61
20425506--20425596	37	2.4	38	80	8	116	14	8	39	37	1.77
20434949--20435478	266	2.0	265	98	0	1015	20	16	18	44	1.87
20442644--20442712	30	2.3	30	82	7	77	18	1	5	73	1.10
20444014--20444101	46	2.0	44	84	4	113	32	5	5	55	1.47
20444666--20444723	28	2.1	27	90	3	89	56	10	0	32	1.33
20447537--20447602	23	2.8	23	68	20	55	37	4	1	56	1.29
20454390--20454832	87	5.1	87	89	0	670	29	22	23	23	1.99
20454451--20454586	45	3.1	43	64	17	100	30	25	21	23	1.99
20454927--20455112	44	4.0	45	68	16	135	33	17	21	27	1.96
20455220--20455382	50	3.3	50	75	0	164	34	22	18	23	1.96
20455942--20455976	14	2.6	14	90	4	54	77	2	20	0	0.90
20457014--20457079	23	2.8	23	68	20	55	36	4	1	57	1.28
20463545--20463685	50	2.8	50	81	3	149	28	22	26	22	1.99
20467773--20467830	26	2.2	26	87	0	80	44	13	12	29	1.80
20471558--20471586	14	2.1	14	100	0	58	20	6	27	44	1.77
20473399--20473483	40	2.2	40	95	2	154	35	24	2	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20476397--20476505	37	3.0	37	77	6	114	41	23	15	19	1.90
20485734--20485793	19	3.2	19	81	11	70	56	5	0	38	1.21
20485784--20485817	17	1.9	18	88	5	52	44	0	0	55	0.99
20487312--20487354	18	2.4	18	92	0	68	23	37	2	37	1.68
20487312--20487354	9	4.8	9	88	0	59	23	37	2	37	1.68
20490450--20490653	96	2.1	96	93	0	354	33	17	12	36	1.87
20502898--20504060	581	2.0	581	99	0	2308	33	16	17	32	1.93
20512705--20512736	6	5.2	6	92	7	55	15	15	0	68	1.21
20512708--20512736	13	2.2	13	100	0	58	13	13	0	72	1.13
20512721--20512838	57	2.1	57	85	1	155	28	16	4	50	1.64
20518853--20518899	23	2.0	23	88	8	69	40	25	27	6	1.80
20519085--20519144	30	2.0	30	87	6	86	21	35	31	11	1.90
20525976--20526010	17	2.2	16	90	10	54	54	8	14	22	1.67
20536287--20536317	6	5.2	6	100	0	62	19	0	0	80	0.71
20537246--20537275	14	2.1	14	93	0	51	16	13	0	70	1.18
20537439--20537469	6	5.2	6	100	0	62	16	0	0	83	0.64
20538256--20538296	21	2.0	21	85	9	57	56	2	2	39	1.26
20538252--20538425	75	2.4	70	78	16	203	51	1	4	41	1.32
20544805--20544879	31	2.4	31	75	0	78	38	12	9	40	1.75
20549271--20549570	156	1.9	156	93	2	516	33	6	10	49	1.63
20553423--20553452	15	2.0	15	100	0	60	26	13	13	46	1.80
20556492--20556689	42	4.7	42	85	6	240	31	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20559927--20560028	45	2.3	45	93	5	172	26	24	15	33	1.95
20563510--20563628	64	1.9	63	82	8	152	56	0	1	41	1.15
20563510--20563640	63	2.0	65	81	8	153	56	1	1	40	1.18
20570287--20570329	22	2.0	22	85	0	59	18	11	18	51	1.76
20572135--20572169	3	11.7	3	100	0	70	31	0	0	68	0.90
20575518--20575649	61	2.2	58	84	7	169	53	5	3	37	1.42
20586625--20587022	31	13.0	31	75	9	327	43	15	8	32	1.77
20586626--20587022	61	6.5	61	75	7	297	43	15	8	32	1.77
20586625--20587015	92	4.2	92	88	1	500	43	15	8	32	1.77
20600558--20600601	21	2.1	21	95	0	79	27	15	9	47	1.76
20620896--20620968	38	1.9	38	82	0	92	36	15	16	31	1.90
20620886--20621133	135	1.8	135	87	1	372	37	16	17	29	1.91
20621003--20621252	37	6.7	37	73	6	182	39	16	15	28	1.89
20626163--20626214	20	2.5	21	81	12	63	30	5	0	63	1.18
20626574--20626639	10	6.2	11	72	20	52	63	3	3	30	1.24
20626670--20626711	19	2.2	19	86	0	57	64	0	4	30	1.14
20634838--20634894	30	1.9	30	82	7	71	24	19	10	45	1.81
20641791--20641952	50	3.3	49	80	5	159	45	12	12	30	1.79
20651005--20651070	25	2.7	24	80	4	69	37	1	1	59	1.16
20655236--20655271	18	2.0	18	89	10	56	27	8	19	44	1.79
20655245--20655278	18	1.9	18	88	5	52	32	5	17	44	1.73
20655802--20655866	27	2.4	27	87	7	89	36	23	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20670140--20670164	11	2.3	11	100	0	50	36	0	0	64	0.94
20679032--20679067	14	2.5	14	90	4	54	25	2	22	50	1.63
20679695--20679720	12	2.2	12	100	0	52	23	38	30	7	1.83
20693098--20693154	28	2.0	28	100	0	114	29	24	17	28	1.97
20696125--20696357	39	6.0	39	87	1	333	15	33	18	32	1.92
20700612--20700815	70	2.9	70	78	4	223	31	23	19	25	1.98
20708069--20708160	42	2.2	43	88	4	141	35	4	7	52	1.50
20709030--20709072	19	2.3	19	84	8	52	53	0	13	32	1.41
20724114--20724152	19	2.1	19	100	0	78	28	20	10	41	1.85
20727051--20727098	22	2.2	22	88	0	69	33	39	4	22	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131