genome.fa.s9.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  5  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1591202--1591259	29	2.0	30	86	6	84	44	13	10	31	1.78
1600643--1600682	20	2.0	20	90	0	62	45	5	30	20	1.72
1602990--1603056	32	2.1	32	94	0	116	38	17	25	17	1.92
1604844--1604877	10	3.4	10	83	0	50	79	5	0	14	0.91
1613081--1613114	3	11.3	3	87	0	50	61	0	5	32	1.20
1614501--1614697	44	4.6	44	68	9	154	24	20	22	31	1.98
1614485--1614743	128	2.0	128	94	0	455	24	20	23	31	1.98
1614498--1614724	44	5.3	43	68	9	131	22	22	22	33	1.98
1614707--1614830	43	2.9	43	76	1	122	26	24	16	32	1.96
1614511--1614784	128	2.1	127	85	4	345	26	21	20	31	1.98
1615293--1615350	24	2.4	24	91	0	89	31	27	8	32	1.87
1616291--1616333	15	2.9	14	80	13	50	6	13	0	79	0.93
1616293--1616340	21	2.3	20	89	7	69	4	14	0	81	0.84
1618799--1619036	118	2.0	119	98	0	460	30	23	23	22	1.99
1620573--1620740	41	4.1	41	95	0	282	30	19	26	24	1.98
1622021--1622054	12	2.8	12	95	0	59	8	20	29	41	1.82
1623943--1624009	33	2.0	33	100	0	134	32	16	14	35	1.90
1624790--1624832	23	2.0	22	90	9	70	48	0	9	41	1.35
1624926--1624968	3	14.3	3	85	0	59	60	0	6	32	1.23
1626731--1626895	82	2.0	83	98	1	323	48	7	3	40	1.48
1627735--1628065	125	2.6	123	83	5	371	32	16	10	40	1.82
1632564--1632615	13	4.1	13	73	14	54	61	7	17	13	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1633399--1633436	20	1.9	20	100	0	76	65	5	15	13	1.43
1635283--1635331	22	2.2	22	100	0	98	36	8	12	42	1.72
1638461--1638539	36	2.2	36	86	0	113	21	18	11	48	1.80
1649855--1649888	17	2.1	17	88	5	52	14	0	23	61	1.33
1650673--1650802	35	3.7	35	84	4	172	36	16	20	26	1.93
1652437--1652490	27	2.0	27	96	0	99	33	14	5	46	1.68
1652451--1652808	179	2.0	179	97	0	671	38	15	11	34	1.83
1654976--1655002	3	9.0	3	100	0	54	66	0	33	0	0.92
1658781--1658842	31	2.0	31	100	0	124	29	9	19	41	1.83
1662715--1662768	26	2.2	24	90	6	81	24	9	9	57	1.59
1662948--1663026	31	2.5	31	83	0	104	24	13	13	48	1.79
1663191--1663237	18	2.6	17	80	12	51	34	0	0	65	0.93
1663395--1663479	43	2.0	43	97	0	161	20	30	28	21	1.98
1669830--1669889	5	12.0	5	100	0	120	60	0	0	40	0.97
1672114--1672204	25	3.6	25	79	4	94	21	24	7	46	1.78
1674454--1674483	6	5.0	6	91	0	51	63	0	20	16	1.31
1674454--1674487	12	2.8	12	90	0	59	64	0	20	14	1.28
1674628--1674701	25	2.9	25	86	7	96	44	9	13	32	1.76
1677729--1677823	24	3.9	25	75	9	88	37	21	23	17	1.94
1678388--1678428	21	2.0	21	90	0	64	36	24	4	34	1.77
1686235--1686285	23	2.2	23	89	0	75	27	7	21	43	1.80
1687609--1687808	105	1.9	101	86	4	283	32	17	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1687644--1687838	105	1.9	105	83	2	257	33	17	23	25	1.97
1690586--1690611	13	2.0	13	100	0	52	15	0	23	61	1.33
1691773--1691886	43	2.7	43	78	8	124	22	21	28	27	1.99
1693862--1694082	27	8.2	27	81	2	237	36	20	20	23	1.95
1693862--1694072	81	2.6	81	84	3	280	35	21	19	23	1.96
1694104--1694166	24	2.6	24	82	0	72	22	7	25	44	1.79
1694336--1694508	32	5.4	32	85	3	206	21	21	18	38	1.94
1694500--1694551	22	2.4	22	80	0	59	17	15	19	48	1.82
1696027--1696056	2	15.0	2	100	0	60	50	0	0	50	1.00
1697069--1697118	25	2.0	25	100	0	100	56	8	12	24	1.62
1698575--1698606	16	1.9	17	93	6	57	9	34	6	50	1.60
1699720--1699762	21	2.0	21	82	8	52	44	9	13	32	1.76
1701568--1701647	39	2.1	39	100	0	160	35	12	20	32	1.90
1701828--1701858	14	2.2	14	94	0	53	38	0	12	48	1.42
1703554--1703626	25	3.0	25	74	18	73	38	2	8	50	1.47
1711337--1711361	12	2.1	12	100	0	50	76	8	0	16	1.02
1717203--1717239	18	2.1	18	100	0	74	35	21	10	32	1.88
1718146--1718194	3	16.3	3	100	0	98	32	0	0	67	0.91
1726296--1726345	11	4.3	11	80	12	55	52	2	0	46	1.12
1731374--1731756	191	2.0	192	99	0	759	38	11	18	31	1.86
1733363--1733413	22	2.3	23	80	19	63	29	3	1	64	1.22
1734472--1734515	13	3.4	13	75	12	54	38	11	18	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1736012--1736107	50	1.9	50	87	4	140	34	18	29	17	1.94
1736012--1736107	25	3.8	25	83	0	120	34	18	29	17	1.94
1736254--1736300	22	2.1	23	84	11	62	48	23	0	27	1.51
1749103--1749157	25	2.2	25	86	0	74	40	3	12	43	1.60
1749531--1749564	10	3.5	10	88	8	52	29	0	5	64	1.17
1751930--1751977	20	2.4	20	86	6	71	52	2	0	45	1.12
1753543--1753598	11	5.2	11	71	2	51	23	5	3	67	1.27
1756844--1756876	7	4.7	7	92	0	57	60	27	9	3	1.42
1763710--1763749	20	2.0	20	95	0	71	32	25	12	30	1.92
1770267--1770294	2	14.0	2	100	0	56	50	0	50	0	1.00
1780625--1780680	22	2.5	23	82	2	69	51	1	1	44	1.22
1780656--1780695	16	2.5	16	91	0	62	47	2	7	42	1.45
1780768--1780804	9	4.3	9	86	13	60	32	0	10	56	1.34
1780765--1780802	16	2.4	16	95	0	67	34	0	10	55	1.34
1781508--1781541	2	17.0	2	100	0	68	50	0	0	50	1.00
1781953--1782358	202	2.0	201	96	1	751	40	17	12	29	1.86
1784735--1784780	22	2.1	22	83	0	56	67	10	8	13	1.42
1787481--1787541	28	2.1	29	82	8	72	59	4	4	31	1.40
1787505--1787603	18	5.7	18	70	20	68	59	5	5	30	1.40
1787596--1787636	18	2.3	18	82	0	55	70	2	4	21	1.18
1787616--1787677	29	2.1	29	82	5	72	64	1	3	30	1.19
1811383--1811437	29	1.9	29	92	3	94	34	0	3	61	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1817479--1817553	37	2.0	37	97	0	141	29	12	12	46	1.77
1818696--1818727	15	2.0	17	88	11	50	6	6	21	65	1.38
1823184--1823221	6	6.7	6	90	3	53	86	0	13	0	0.56
1823701--1824438	183	4.0	183	92	1	1196	18	19	26	35	1.94
1840673--1840745	37	2.0	37	100	0	146	41	21	16	20	1.90
1841498--1841547	22	2.3	22	89	0	73	18	22	30	30	1.97
1841498--1841554	22	2.6	22	85	0	69	21	22	26	29	1.99
1846493--1846551	28	2.1	27	84	3	73	37	11	25	25	1.90
1847837--1847893	22	2.6	22	80	0	69	19	22	31	26	1.98
1852838--1852884	22	2.1	23	84	4	60	6	17	19	57	1.60
1857777--1857959	50	3.6	50	80	2	188	30	26	18	25	1.98
1868459--1868567	57	1.9	57	83	7	141	34	21	18	25	1.96
1870330--1870555	67	3.4	67	85	4	296	32	19	23	24	1.98
1873187--1873218	4	7.8	4	96	3	55	28	0	0	71	0.86
1875946--1876048	42	2.5	42	83	0	125	41	19	22	16	1.90
1880689--1880838	57	2.6	57	95	1	266	34	20	22	24	1.97
1884588--1884613	2	13.0	2	100	0	52	50	0	0	50	1.00
1884636--1884662	4	6.8	4	100	0	54	77	0	0	22	0.76
1884757--1884849	47	2.0	47	85	8	127	48	2	9	39	1.48
1884947--1885044	3	33.3	3	74	11	78	60	5	1	33	1.26
1884947--1885101	15	9.8	16	69	15	92	58	5	2	33	1.36
1884984--1885091	23	4.5	24	71	21	68	59	6	2	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885074--1885122	20	2.6	19	84	12	57	53	4	6	36	1.45
1887168--1887201	10	3.4	10	83	0	50	52	0	0	47	1.00
1889611--1889639	14	2.1	14	100	0	58	31	6	6	55	1.53
1895009--1895283	135	2.0	138	95	3	504	38	7	14	39	1.73
1895347--1895372	11	2.4	11	100	0	52	50	7	42	0	1.31
1904725--1904806	41	2.0	41	95	0	146	39	1	15	43	1.55
1909332--1909362	3	10.3	3	100	0	62	0	32	0	67	0.91
1910133--1910169	2	18.5	2	100	0	74	48	0	0	51	1.00
1910178--1910225	23	2.0	24	84	8	62	27	12	14	45	1.81
1910960--1910995	10	3.8	9	92	7	54	66	0	2	30	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131