genome.fa.s9.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  115  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38176117--38176405	44	6.5	44	77	6	271	28	16	25	29	1.97
38176117--38176405	132	2.2	133	92	0	481	28	16	25	29	1.97
38176390--38176617	88	2.6	88	87	0	330	27	28	23	20	1.99
38176617--38176824	44	4.7	45	81	5	221	27	15	27	28	1.96
38176633--38176802	88	1.9	88	88	4	254	28	15	26	30	1.96
38176629--38176824	88	2.2	88	82	3	252	28	15	28	28	1.96
38177638--38177694	19	2.7	22	84	10	66	36	8	15	38	1.79
38177663--38177708	21	2.1	22	84	8	58	36	4	15	43	1.66
38177650--38177708	22	2.7	23	79	7	61	37	5	16	40	1.71
38179846--38179979	40	3.3	40	90	0	214	48	25	8	17	1.75
38181441--38181476	18	2.0	18	100	0	72	61	11	16	11	1.57
38182798--38182843	24	1.9	24	82	8	58	23	8	4	63	1.42
38189984--38190031	18	2.7	18	93	0	78	29	8	10	52	1.65
38193401--38193446	9	5.1	9	94	0	83	45	13	10	30	1.77
38194591--38194657	31	2.2	30	79	12	73	29	16	1	52	1.53
38194799--38194844	17	2.7	17	79	0	65	69	0	0	30	0.89
38197176--38197214	18	2.1	19	85	4	53	61	12	12	12	1.57
38198144--38198199	24	2.3	24	84	9	69	28	0	0	71	0.86
38198147--38198198	15	3.4	16	81	7	63	28	0	0	71	0.87
38198156--38198197	17	2.3	18	84	12	59	28	0	0	71	0.86
38198188--38198220	14	2.3	15	89	5	50	21	0	9	69	1.15
38198639--38198727	44	2.0	44	86	0	124	23	21	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38198812--38199123	129	2.4	129	91	0	489	24	26	19	29	1.98
38199112--38199419	131	2.4	128	78	6	366	24	25	20	30	1.99
38200672--38200708	7	5.6	7	84	9	51	13	16	0	70	1.17
38200657--38200707	13	4.0	13	78	9	52	17	17	0	64	1.29
38201579--38201633	29	1.9	29	85	3	76	14	12	10	61	1.56
38201586--38201648	29	2.4	26	84	12	76	9	11	9	69	1.36
38207480--38207534	16	3.4	16	80	7	58	29	0	0	70	0.87
38207491--38207533	18	2.3	19	84	4	61	27	0	0	72	0.85
38227004--38227043	20	2.1	19	86	9	55	60	2	0	37	1.11
38228886--38228937	22	2.5	21	81	9	61	44	30	5	19	1.74
38229362--38229395	17	2.0	17	88	0	50	58	11	0	29	1.33
38231559--38231657	52	1.9	52	83	6	130	36	4	19	40	1.70
38235982--38236018	2	18.5	2	100	0	74	0	48	0	51	1.00
38237338--38237435	38	2.6	38	93	0	160	29	16	20	33	1.94
38240742--38240766	12	2.1	12	100	0	50	44	16	16	24	1.86
38241862--38241903	11	3.9	10	87	9	57	50	21	2	26	1.61
38241860--38241914	22	2.5	22	90	0	83	45	21	7	25	1.77
38241931--38241972	11	3.8	11	75	12	50	50	21	4	23	1.68
38241936--38241983	22	2.2	22	92	0	78	43	22	8	25	1.81
38241836--38242030	69	2.8	69	87	1	275	45	20	11	23	1.83
38242610--38242709	42	2.4	42	80	9	107	33	24	16	27	1.95
38243491--38243517	6	4.5	6	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38243483--38243516	11	3.0	11	87	8	50	17	2	0	79	0.86
38247929--38247963	15	2.4	15	90	4	54	48	0	8	42	1.33
38254665--38254735	29	2.4	29	77	11	74	49	1	4	45	1.30
38254834--38254873	19	2.0	20	85	4	55	27	2	5	65	1.27
38263220--38263291	36	2.0	36	100	0	144	30	30	11	27	1.91
38266648--38266699	27	2.0	26	88	3	77	32	15	17	34	1.91
38266655--38266747	27	3.4	27	79	2	89	30	12	22	34	1.92
38279456--38279531	37	2.1	37	87	0	107	23	10	21	44	1.83
38286490--38286556	35	1.9	35	93	0	116	37	10	25	26	1.88
38288368--38288393	2	13.0	2	100	0	52	50	0	0	50	1.00
38293636--38293668	3	11.0	3	100	0	66	66	0	0	33	0.92
38299149--38299206	27	2.1	27	84	12	75	41	17	17	24	1.90
38300478--38300508	16	1.9	16	100	0	62	38	35	6	19	1.77
38303954--38303989	18	2.1	17	89	5	54	41	0	0	58	0.98
38307531--38307572	15	2.7	16	82	14	52	45	0	2	52	1.13
38307522--38307563	15	2.9	15	82	10	52	47	0	0	52	1.00
38307710--38307806	45	2.2	45	87	5	135	31	27	5	35	1.79
38307784--38307818	16	2.2	16	94	0	61	22	31	5	40	1.78
38313640--38313705	20	3.5	20	72	19	70	42	7	16	33	1.77
38317495--38317525	9	3.4	9	95	0	53	61	22	0	16	1.34
38320875--38321054	90	2.0	90	100	0	360	35	16	14	33	1.89
38335036--38335084	24	2.0	24	88	0	71	34	16	12	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38336119--38336345	43	5.3	43	82	5	253	24	31	20	24	1.98
38337992--38338052	28	2.2	28	85	5	79	32	24	9	32	1.88
38339517--38339541	12	2.1	12	100	0	50	52	16	8	24	1.70
38341622--38341662	21	2.0	20	90	4	64	39	39	0	21	1.54
38341837--38341884	14	3.2	15	76	8	53	37	33	0	29	1.58
38341842--38341929	29	3.1	28	80	11	106	34	40	0	25	1.56
38341851--38341928	22	3.6	22	75	13	56	34	39	0	25	1.56
38341867--38341912	14	3.2	15	78	9	60	34	43	0	21	1.53
38341832--38341915	15	5.7	15	73	12	57	35	40	0	23	1.55
38341874--38341930	21	2.7	20	78	10	60	35	40	0	24	1.56
38341867--38341932	14	4.6	14	73	16	55	34	40	0	24	1.55
38342322--38342513	106	1.8	106	82	8	248	33	25	18	22	1.97
38342411--38342515	41	2.6	41	86	3	140	35	26	16	21	1.94
38344105--38344142	15	2.4	16	82	8	51	23	28	0	47	1.52
38345168--38345210	19	2.2	20	84	12	63	32	18	0	48	1.48
38345335--38345469	38	3.5	38	79	7	121	29	23	20	25	1.99
38346094--38346151	29	2.0	29	80	12	66	41	25	1	31	1.66
38346546--38346616	18	3.7	18	74	18	63	53	4	0	42	1.20
38348861--38348977	40	3.0	39	80	8	130	33	23	19	23	1.97
38348903--38348988	40	2.2	39	83	6	111	31	24	23	20	1.98
38349085--38349185	40	2.5	40	83	3	114	25	21	26	25	2.00
38348920--38349343	196	2.2	195	85	2	573	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38349137--38349427	148	1.9	152	84	8	387	31	19	23	25	1.98
38349392--38349467	40	1.9	40	94	0	134	36	19	18	25	1.94
38349161--38349489	148	2.2	152	82	8	386	31	19	23	26	1.98
38349232--38349607	188	2.0	194	81	7	446	31	19	22	25	1.98
38349401--38349531	40	3.3	39	79	6	138	32	22	23	21	1.98
38349628--38349660	15	2.3	15	89	5	50	21	3	27	48	1.64
38350164--38350413	7	35.1	7	69	12	80	21	0	35	42	1.58
38350164--38350328	50	3.2	50	72	13	134	20	1	35	43	1.60
38350208--38350420	64	3.4	63	68	14	165	21	1	35	42	1.62
38350112--38350397	57	4.9	57	71	7	205	21	1	35	41	1.62
38350256--38350445	43	4.3	42	66	19	116	21	1	34	42	1.62
38358261--38358549	43	6.8	42	85	3	348	21	17	28	33	1.96
38358643--38358683	21	2.0	21	95	0	73	43	24	17	14	1.86
38362127--38362190	18	3.6	18	82	4	76	29	7	25	37	1.84
38362710--38362917	75	2.8	73	79	8	213	34	20	24	20	1.96
38365428--38365460	17	1.9	17	93	0	57	48	15	6	30	1.69
38366409--38366442	17	1.9	18	94	5	61	73	14	5	5	1.21
38371075--38371301	45	5.0	45	95	4	420	37	26	2	33	1.69
38371075--38371301	92	2.5	90	97	2	420	37	26	2	33	1.69
38375087--38375229	69	2.0	71	84	7	186	48	9	9	32	1.68
38378572--38378601	12	2.5	12	94	0	51	50	0	3	46	1.18
38380516--38380552	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38381107--38381173	29	2.3	29	80	10	82	23	14	14	46	1.83
38381473--38382024	275	2.0	275	97	0	1034	34	12	22	30	1.91
38384662--38384888	110	2.0	113	93	3	388	47	5	11	35	1.63
38384671--38384889	56	3.9	56	88	5	336	46	5	11	36	1.64
38385275--38385396	29	4.2	29	93	1	201	23	1	30	44	1.63
38385381--38385416	5	7.2	5	93	0	63	19	2	41	36	1.66
38385473--38385503	15	2.0	16	93	6	55	67	6	0	25	1.14
38386891--38386932	21	2.0	22	86	13	61	38	4	23	33	1.76
38388012--38388073	30	2.1	30	100	0	124	33	16	12	37	1.87
38392708--38392819	40	2.8	40	82	4	138	33	25	22	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131