genome.fa.s9.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  9  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2813204--2813237	16	2.1	16	88	0	50	64	0	0	35	0.94
2814540--2814582	22	1.9	23	90	4	70	51	18	16	13	1.77
2818953--2819497	154	3.5	155	79	4	607	37	17	15	28	1.91
2818930--2819653	310	2.4	299	84	3	912	38	16	15	28	1.90
2825267--2825405	57	2.4	57	79	1	143	23	17	16	41	1.89
2828603--2828669	31	2.2	30	89	5	100	41	14	11	31	1.83
2829012--2830996	283	7.0	283	100	0	3970	33	16	18	30	1.94
2832338--2832372	3	11.7	3	87	0	52	0	5	34	60	1.21
2834011--2834044	17	2.0	17	88	0	50	47	5	0	47	1.26
2835756--2835789	5	6.8	5	96	0	59	20	23	20	35	1.96
2835206--2836447	621	2.0	621	100	0	2484	33	13	19	33	1.91
2836377--2836410	5	6.8	5	96	0	59	20	23	20	35	1.96
2838785--2838872	25	3.6	25	82	1	115	18	27	15	38	1.91
2838785--2838904	25	4.9	25	79	2	109	21	25	17	35	1.95
2840156--2840186	3	10.3	3	100	0	62	67	0	0	32	0.91
2841696--2841852	85	1.8	85	82	5	201	28	21	21	28	1.98
2841922--2842071	41	3.5	41	72	19	151	31	21	18	28	1.97
2841919--2842117	90	2.2	90	100	0	398	30	23	17	28	1.97
2842133--2842860	100	7.4	99	86	4	791	24	19	23	32	1.97
2842159--2842860	50	14.3	49	72	12	458	24	19	23	32	1.98
2843479--2843605	50	2.5	50	84	2	184	26	18	18	36	1.94
2843734--2843959	44	5.1	44	67	18	146	26	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2843778--2844003	45	5.1	44	66	19	157	25	24	23	26	2.00
2843729--2844094	88	4.2	88	89	3	519	25	25	22	25	2.00
2843729--2844148	88	4.8	87	89	3	362	25	25	22	26	2.00
2845369--2845420	7	7.6	7	91	4	88	13	15	0	71	1.15
2845367--2845420	27	2.0	27	96	0	99	14	16	0	68	1.21
2846332--2846410	27	2.9	26	75	9	77	11	10	6	72	1.28
2851029--2851085	3	18.7	3	89	3	87	64	1	1	31	1.13
2856824--2856848	2	12.5	2	100	0	50	48	0	0	52	1.00
2857944--2858000	24	2.4	24	88	5	80	45	14	7	33	1.71
2857956--2858007	24	2.2	24	92	0	86	48	9	5	36	1.60
2862785--2862836	24	2.2	24	89	0	77	50	9	3	36	1.54
2864145--2864169	13	1.9	13	100	0	50	24	8	16	52	1.70
2866690--2866854	85	1.9	85	86	0	231	27	25	19	27	1.99
2869958--2870011	28	1.9	27	85	14	74	27	1	1	68	1.10
2873364--2873571	103	2.0	104	98	1	400	22	19	16	42	1.89
2874720--2874760	21	2.0	21	85	0	55	31	4	7	56	1.48
2883323--2883359	15	2.3	16	90	9	58	83	2	13	0	0.74
2888984--2889028	21	2.1	21	95	0	81	40	31	8	20	1.83
2891673--2891746	3	24.3	3	72	8	60	29	6	1	62	1.29
2896801--2896845	23	2.0	23	100	0	90	46	13	8	31	1.74
2897753--2897790	20	1.9	20	89	10	60	55	13	10	21	1.67
2898180--2898332	76	2.0	77	98	1	299	46	6	3	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2900057--2900262	106	1.9	106	89	0	313	42	15	6	35	1.73
2900593--2900652	29	2.1	29	84	6	77	18	3	40	38	1.67
2903856--2903903	23	2.2	21	85	7	60	47	0	4	47	1.21
2905690--2906232	271	2.0	271	93	1	928	33	17	14	35	1.90
2921817--2921854	18	2.1	19	85	5	51	28	2	5	63	1.30
2923952--2924034	31	2.7	31	86	0	121	49	8	7	34	1.61
2935834--2935948	61	1.9	61	81	3	142	44	14	2	38	1.60
2941627--2941832	112	1.8	112	97	2	396	33	20	16	28	1.95
2941627--2941857	112	2.1	112	89	4	351	34	19	17	28	1.94
2942406--2942827	106	4.0	106	90	1	648	32	17	18	30	1.95
2943093--2943136	23	2.0	22	81	4	52	63	2	11	22	1.38
2954948--2955054	52	2.1	52	92	0	178	18	28	9	43	1.81
2955810--2955851	22	2.0	20	86	13	59	52	9	0	38	1.34
2959898--2959927	14	2.1	14	93	0	51	46	3	0	50	1.18
2962595--2962627	2	16.5	2	100	0	66	51	0	0	48	1.00
2966249--2966297	10	5.0	10	78	16	50	44	0	4	51	1.20
2976632--2976806	66	2.7	66	85	0	244	21	26	25	26	1.99
2983500--2983619	61	2.0	60	83	4	152	43	15	3	37	1.64
2984539--2984595	28	2.0	28	90	6	89	38	5	0	56	1.22
2986033--2986058	2	13.0	2	100	0	52	50	0	0	50	1.00
2988790--2988950	33	4.8	32	71	8	115	29	14	26	29	1.95
2988772--2988962	101	1.9	101	93	0	328	29	15	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2989198--2989230	12	2.8	12	100	0	66	27	6	24	42	1.78
2993040--2993638	202	3.0	201	84	3	783	32	14	22	30	1.94
2993619--2993670	23	2.3	23	80	6	61	13	17	28	40	1.87
2996519--2996561	21	2.0	21	86	8	61	58	0	0	41	0.98
2997189--2997231	18	2.4	18	85	11	61	67	4	11	16	1.38
3009961--3010219	127	2.0	128	99	0	511	54	14	6	25	1.63
3012502--3012544	3	14.3	3	90	0	68	2	2	30	65	1.18
3026693--3026855	85	1.9	85	97	0	308	44	17	14	22	1.85
3036259--3036286	2	14.0	2	100	0	56	50	0	50	0	1.00
3036753--3036780	12	2.3	12	100	0	56	32	28	7	32	1.84
3040648--3040693	7	6.9	7	83	11	53	73	0	17	8	1.07
3040648--3040699	26	2.0	26	92	7	88	73	0	19	7	1.07
3047967--3047991	2	12.5	2	100	0	50	52	0	0	48	1.00
3059599--3059643	21	2.0	21	87	8	63	64	0	2	33	1.06
3059567--3059646	9	8.3	9	73	17	54	60	1	1	37	1.13
3060389--3060423	18	1.9	18	88	0	52	51	2	0	45	1.16
3068222--3068333	56	2.0	56	96	0	206	48	3	3	44	1.37
3073564--3073755	98	2.0	97	98	1	375	39	12	11	35	1.80
3074962--3075003	19	2.3	19	83	4	50	50	0	0	50	1.00
3078730--3078771	19	2.3	19	83	4	50	50	0	0	50	1.00
3098868--3098934	18	3.6	18	73	18	57	41	1	0	56	1.08
3099610--3099796	96	1.9	97	90	1	295	37	6	26	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3105585--3105622	19	2.0	20	89	5	60	2	15	2	78	0.97
3106108--3106158	10	5.0	10	75	13	50	68	3	1	25	1.17
3110133--3110163	15	2.1	15	93	0	53	90	0	9	0	0.46
3114787--3114845	15	4.1	14	80	8	57	71	3	1	23	1.11
3117624--3117685	27	2.3	26	78	10	63	51	9	4	33	1.56
3117888--3117936	3	16.0	3	91	4	80	63	0	2	34	1.06
3129024--3129167	72	2.0	73	90	1	227	30	22	10	36	1.88
3135784--3135839	26	2.2	26	90	6	87	28	25	17	28	1.98
3142252--3142308	19	2.8	20	75	17	64	36	8	14	40	1.76
3154360--3154401	20	2.0	21	86	4	59	73	2	2	21	1.06
3154401--3154481	19	4.3	19	69	19	53	59	1	4	34	1.27
3154403--3154519	57	2.0	57	82	8	139	58	2	8	30	1.42
3154724--3154999	88	3.1	88	85	6	364	34	7	17	40	1.78
3170830--3170891	29	2.1	29	96	0	115	43	20	16	19	1.88
3173054--3173122	35	2.1	33	82	15	97	65	15	1	17	1.35
3179935--3179968	3	11.3	3	87	0	50	64	2	0	32	1.08
3189616--3189661	14	3.2	15	77	17	53	50	4	6	39	1.48
3197136--3197205	31	2.3	30	81	16	81	45	1	1	51	1.18
3197137--3197216	32	2.5	32	80	13	85	45	2	1	51	1.22
3202063--3202162	47	2.1	47	88	1	146	35	9	14	42	1.77
3202872--3202915	2	22.5	2	90	4	72	50	0	0	50	1.00
3209054--3209092	18	2.2	18	85	0	51	46	10	17	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3211401--3211433	16	2.1	16	88	5	50	27	0	0	72	0.85
3216657--3216715	25	2.4	25	100	0	118	50	6	5	37	1.51
3219166--3219240	29	2.5	30	76	10	73	42	9	16	32	1.79
3221142--3221202	29	2.1	29	93	0	104	39	14	4	40	1.68
3221529--3221661	40	3.3	40	80	5	144	31	19	21	27	1.97
3222097--3222192	14	6.9	14	71	11	63	22	0	30	46	1.52
3222097--3222191	21	4.5	21	73	5	75	23	0	29	47	1.52
3222097--3222192	35	2.7	35	79	9	106	22	0	30	46	1.52
3226967--3227065	43	2.3	43	81	8	121	25	16	26	32	1.96
3226994--3227192	43	4.7	43	78	1	229	22	19	26	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131