genome.fa.s9.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  55  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18083285--18083322	18	2.1	18	100	0	76	15	0	26	57	1.38
18083488--18084249	124	6.1	124	98	0	1416	29	16	21	31	1.96
18087087--18087139	22	2.5	21	77	19	56	30	0	7	62	1.23
18087093--18087145	28	2.0	28	85	14	76	33	0	5	60	1.20
18090750--18090777	4	7.0	4	100	0	56	25	25	0	50	1.50
18091526--18091606	6	13.5	6	76	15	62	82	1	13	2	0.83
18091526--18091577	15	3.8	14	81	16	56	82	0	17	0	0.66
18091527--18091613	24	3.7	23	79	10	86	82	2	12	2	0.85
18091528--18091606	22	3.5	22	80	14	83	82	1	13	2	0.84
18092124--18092172	7	7.0	7	84	15	66	69	0	16	14	1.19
18092124--18092172	15	3.5	14	79	17	57	69	0	16	14	1.19
18093603--18093976	50	7.5	50	72	1	284	29	24	26	19	1.99
18093593--18094026	50	8.7	49	69	7	264	30	24	25	19	1.98
18093593--18094089	100	5.0	100	91	0	746	29	24	25	20	1.99
18095814--18095871	26	2.2	25	80	19	66	32	3	3	60	1.30
18096013--18096068	28	2.0	28	82	0	67	39	7	1	51	1.40
18098456--18098755	21	14.0	21	84	4	375	25	1	30	44	1.61
18098456--18098755	43	7.0	43	85	3	390	25	1	30	44	1.61
18098723--18098776	27	2.0	27	92	0	90	22	0	37	40	1.54
18099297--18099339	18	2.4	18	84	0	59	46	9	27	16	1.77
18099986--18100011	7	3.7	7	100	0	52	57	15	0	26	1.38
18100954--18101053	51	2.0	51	86	4	139	45	3	26	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18101013--18101089	11	6.9	11	72	19	63	44	1	28	25	1.62
18101013--18101089	22	3.5	22	80	16	88	44	1	28	25	1.62
18101013--18101088	33	2.3	35	79	9	86	43	1	28	26	1.63
18101995--18102027	13	2.5	13	100	0	66	27	0	0	72	0.85
18102004--18102046	17	2.5	17	84	3	59	25	0	0	74	0.82
18102484--18102528	19	2.4	19	84	0	54	60	2	0	37	1.09
18104971--18105123	26	5.9	26	77	6	139	22	12	27	37	1.90
18104975--18105142	52	3.2	52	78	5	144	23	13	25	38	1.91
18104975--18105142	78	2.2	78	85	0	219	23	13	25	38	1.91
18104974--18105142	26	6.5	25	72	12	110	23	13	26	37	1.91
18108532--18108578	17	2.9	16	79	17	53	29	4	8	57	1.48
18108863--18109140	132	2.1	132	96	2	513	43	5	8	42	1.57
18111501--18111558	27	2.2	26	78	6	62	24	8	10	56	1.60
18128123--18128204	40	2.0	40	88	0	119	36	20	10	31	1.88
18136056--18136091	17	2.1	17	89	0	54	19	2	8	69	1.27
18136539--18136825	147	2.0	147	100	0	574	41	10	6	41	1.66
18141857--18141936	41	2.0	41	97	0	151	50	21	6	22	1.71
18143477--18143596	60	2.0	60	96	0	222	46	10	13	30	1.75
18148709--18148763	21	2.8	19	84	13	60	67	0	9	23	1.19
18149208--18149371	39	4.2	40	82	7	183	14	18	28	39	1.89
18149223--18149378	79	2.0	79	84	5	208	13	18	29	38	1.89
18151194--18151267	21	3.5	21	87	7	105	13	24	21	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18152189--18152214	12	2.2	12	100	0	52	23	30	30	15	1.95
18152345--18152383	20	1.9	21	89	5	62	35	15	2	46	1.60
18161249--18161396	47	3.0	49	88	8	239	26	25	7	40	1.82
18163705--18163810	55	1.9	55	90	0	167	35	24	20	18	1.95
18163828--18163876	22	2.2	22	92	0	80	32	22	4	40	1.73
18163866--18163894	12	2.4	12	100	0	58	48	6	6	37	1.57
18164951--18165095	50	2.9	50	81	5	168	29	21	22	26	1.99
18164957--18165120	25	6.6	25	80	6	145	30	21	21	26	1.98
18164957--18165095	75	1.9	74	84	1	188	30	20	23	26	1.98
18165665--18166281	320	1.9	320	97	0	1171	37	18	17	26	1.93
18168094--18168171	14	5.6	14	69	6	50	30	16	8	43	1.79
18170481--18170537	30	1.9	30	100	0	114	43	28	3	24	1.70
18172035--18172069	14	2.5	14	90	0	52	45	2	28	22	1.67
18174106--18174149	22	2.0	21	86	4	61	20	11	27	40	1.86
18197060--18197084	10	2.5	10	100	0	50	60	8	24	8	1.52
18202039--18202193	73	2.1	73	80	2	177	32	20	26	20	1.97
18202100--18202192	25	3.8	24	73	8	80	31	20	26	21	1.98
18207832--18207871	21	2.0	20	85	5	53	65	0	35	0	0.93
18207846--18207902	24	2.3	24	79	8	62	56	0	43	0	0.99
18208602--18208650	24	2.0	25	84	11	66	26	4	8	61	1.42
18210416--18210700	134	2.1	134	97	1	534	40	7	8	43	1.64
18221360--18221408	24	2.0	25	84	11	66	26	4	8	61	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18225428--18225516	44	2.0	44	88	0	133	37	10	5	47	1.61
18233670--18233694	13	1.9	13	100	0	50	56	16	4	24	1.57
18239366--18239422	22	2.7	22	79	15	66	26	21	3	49	1.65
18241012--18241186	90	1.9	90	100	0	350	18	22	14	44	1.86
18242914--18242951	19	2.0	20	85	15	53	73	5	7	13	1.22
18244153--18244273	59	2.0	60	96	1	226	33	21	8	37	1.83
18251838--18251869	15	2.3	15	89	10	50	21	28	25	25	1.99
18252855--18252885	14	2.2	14	100	0	62	58	12	0	29	1.35
18265964--18266005	21	2.0	20	86	4	57	21	30	28	19	1.97
18266909--18267830	460	2.0	460	100	0	1844	27	13	16	43	1.85
18268062--18268117	27	2.1	27	100	0	112	50	14	17	17	1.79
18277462--18277498	14	2.7	13	84	15	56	54	0	0	45	1.00
18278825--18278892	28	2.4	28	85	4	93	29	27	19	23	1.98
18281810--18282007	53	3.7	53	76	0	180	29	25	13	31	1.93
18284551--18284610	31	1.9	31	89	0	93	41	26	11	20	1.86
18299092--18299155	20	3.2	20	84	0	83	35	23	25	15	1.94
18299172--18299228	20	2.8	20	70	0	60	45	19	24	10	1.81
18299172--18299266	40	2.4	40	85	0	118	47	15	23	13	1.81
18303041--18303079	20	2.0	19	90	5	60	46	10	0	43	1.37
18303042--18303086	20	2.2	20	84	7	56	44	13	0	42	1.43
18303331--18303363	7	4.7	7	96	0	57	45	27	0	27	1.54
18310346--18310384	17	2.3	17	100	0	78	43	12	17	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18314716--18314769	20	2.7	20	88	5	74	35	27	12	24	1.92
18314717--18314783	20	3.4	19	76	19	57	34	26	13	25	1.93
18315755--18315808	28	1.9	28	85	7	74	37	24	9	29	1.86
18316607--18316647	21	2.0	21	85	9	57	39	0	0	60	0.96
18324446--18324491	22	2.1	22	88	8	67	36	4	8	50	1.53
18325694--18325806	56	2.0	56	92	0	190	43	12	14	30	1.82
18328628--18329142	257	2.0	257	100	0	1030	41	14	26	18	1.88
18331309--18331467	80	2.0	80	91	1	255	25	20	6	47	1.74
18336234--18336280	20	2.3	20	82	17	62	44	0	0	55	0.99
18337032--18337109	38	2.1	38	100	0	156	21	17	14	46	1.84
18337976--18338161	23	8.1	23	78	1	167	39	20	16	23	1.92
18338042--18338162	45	2.7	46	85	1	172	37	21	17	23	1.94
18338001--18338186	23	8.1	23	80	3	178	39	19	16	23	1.92
18344834--18345008	41	4.3	41	83	2	174	29	20	27	22	1.98
18345195--18345258	33	1.9	33	93	0	110	28	7	26	37	1.84
18345195--18345279	33	2.6	32	83	10	93	27	9	27	36	1.87
18349702--18349968	43	6.2	43	82	6	276	30	20	25	23	1.98
18349723--18349968	129	1.9	128	84	5	327	31	21	24	23	1.98
18352393--18352558	39	4.2	39	90	0	242	33	21	13	31	1.92
18358944--18359048	42	2.5	42	90	0	165	27	23	21	26	1.99
18359674--18359710	19	1.9	19	88	0	56	18	29	27	24	1.98
18360445--18360510	20	3.2	20	72	10	62	36	19	34	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18360411--18360526	40	2.9	40	88	2	153	36	20	29	13	1.91
18363442--18363614	45	3.8	45	85	1	204	30	16	21	32	1.95
18363442--18363658	90	2.4	91	80	4	228	29	16	22	32	1.95
18366373--18366587	29	7.3	30	78	10	221	20	27	15	36	1.93
18366374--18366596	89	2.5	85	83	10	270	21	27	15	36	1.93
18366374--18366582	59	3.6	58	75	10	228	20	27	14	37	1.92
18366387--18366604	118	1.9	116	84	4	294	21	26	13	38	1.91
18371850--18372460	310	2.0	312	96	1	1129	30	24	9	35	1.87
18375047--18375149	52	2.0	52	94	0	179	31	15	15	37	1.89
18376511--18376894	192	2.0	195	93	2	666	38	13	10	37	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131