genome.fa.s9.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  51  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16892975--16893257	43	6.6	43	80	4	313	33	28	15	22	1.94
16892975--16893258	85	3.3	84	81	5	329	33	28	15	22	1.94
16892975--16893257	128	2.2	128	85	6	394	33	28	15	22	1.94
16893615--16894308	351	2.0	350	95	1	1264	42	17	13	27	1.87
16897771--16897820	22	2.3	21	82	3	64	44	30	0	26	1.55
16898232--16898280	14	3.5	14	82	0	62	46	34	0	18	1.49
16898469--16898702	41	5.7	41	78	7	210	29	28	18	23	1.98
16898484--16898702	82	2.7	82	82	7	243	30	28	18	22	1.97
16900049--16900094	22	2.1	22	87	0	65	0	39	2	58	1.10
16900061--16900094	11	3.1	11	100	0	68	0	35	0	64	0.94
16903691--16903762	17	3.9	17	75	18	72	56	5	6	30	1.48
16907604--16907747	33	4.3	33	65	3	90	29	22	15	33	1.94
16907509--16907748	101	2.4	101	90	1	365	30	24	14	31	1.94
16909665--16909730	31	2.1	31	83	5	80	60	4	0	34	1.17
16910560--16910741	87	2.1	87	79	8	192	34	10	12	42	1.77
16910708--16910870	84	1.9	85	88	1	247	31	11	12	44	1.78
16910713--16910931	84	2.6	84	83	4	239	31	12	13	43	1.81
16914576--16914695	53	2.3	52	80	8	145	35	2	1	60	1.20
16914627--16914651	13	1.9	13	100	0	50	28	0	0	72	0.86
16914641--16914720	9	8.8	9	73	17	58	31	1	1	66	1.08
16914684--16914716	8	4.2	8	84	7	50	30	0	0	69	0.88
16916036--16916083	12	4.1	12	78	10	55	31	0	4	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16916036--16916089	24	2.2	26	86	6	76	31	1	3	62	1.23
16927752--16927796	22	2.0	22	100	0	90	44	17	13	24	1.85
16928578--16928760	50	3.7	50	71	4	145	31	20	25	22	1.98
16928636--16928783	50	3.0	50	68	5	138	29	21	23	25	1.99
16928583--16928774	100	1.9	100	93	0	330	30	22	23	23	1.99
16930401--16930441	3	14.3	3	80	10	50	31	0	2	65	1.05
16941615--16941666	17	3.5	16	73	26	60	40	5	25	28	1.78
16947471--16947726	48	5.3	48	88	3	266	30	10	11	47	1.74
16948125--16948224	12	8.3	12	82	0	101	5	33	32	30	1.79
16948129--16948223	6	15.8	6	71	4	66	5	32	31	30	1.80
16948839--16948871	14	2.4	14	94	0	57	42	6	15	36	1.71
16950435--16950506	16	4.4	16	69	20	51	68	12	0	19	1.21
16951625--16951669	20	2.2	21	84	7	58	40	4	8	46	1.55
16952023--16952094	31	2.2	32	85	4	101	55	11	12	20	1.67
16952033--16952092	31	1.9	32	93	3	104	56	6	13	23	1.60
16953378--16953408	16	1.9	16	100	0	62	45	19	22	12	1.84
16960531--16960645	44	2.7	43	75	16	121	29	28	19	22	1.98
16988523--16988559	14	2.4	16	86	8	51	51	13	0	35	1.41
16989257--16989353	41	2.4	41	89	0	140	30	18	19	30	1.96
16989257--16989369	41	2.8	41	84	2	111	31	18	20	29	1.96
16996013--16996249	40	5.9	40	86	5	318	13	16	28	41	1.86
16996014--16996249	80	3.0	80	89	2	350	13	16	28	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16996015--16996258	120	2.1	118	89	3	373	13	16	29	40	1.87
16998167--16998232	23	2.9	23	79	0	69	31	6	24	37	1.80
17020751--17020795	23	1.9	24	86	4	65	60	4	0	35	1.17
17034585--17034697	45	2.5	45	80	12	133	26	21	26	25	1.99
17034585--17034710	45	2.8	45	76	17	125	26	21	26	24	1.99
17034867--17034972	44	2.4	44	80	3	115	30	20	18	30	1.97
17035041--17035152	44	2.6	43	82	13	131	28	23	19	28	1.98
17034864--17035236	173	2.1	175	86	2	502	30	21	20	27	1.98
17034864--17035284	173	2.4	173	83	3	481	30	21	20	28	1.98
17039141--17039166	6	4.3	6	100	0	52	19	0	0	80	0.71
17044980--17045071	20	4.6	20	72	22	68	46	5	1	46	1.32
17046246--17046283	3	12.7	3	94	0	67	0	63	0	36	0.95
17053088--17053171	41	2.0	41	97	0	159	32	32	16	19	1.94
17053132--17053357	72	2.8	81	81	14	290	28	23	25	22	1.99
17053132--17053294	86	1.9	86	92	1	274	31	24	23	20	1.98
17053386--17053617	73	3.2	73	86	1	286	30	21	22	25	1.99
17053211--17053713	260	1.9	260	87	2	742	27	22	24	25	2.00
17053520--17053857	114	2.9	113	88	3	453	24	22	24	28	1.99
17055004--17055108	52	2.0	52	96	0	192	31	16	18	34	1.93
17060354--17060519	87	1.9	87	85	2	226	41	18	28	12	1.86
17060935--17061165	42	5.5	42	73	7	144	29	20	20	29	1.98
17061029--17061057	13	2.2	13	100	0	58	6	20	31	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17060935--17061179	127	1.9	128	89	0	384	28	20	21	29	1.98
17061117--17061220	55	1.9	55	86	4	147	30	19	19	30	1.96
17061171--17061266	42	2.3	42	85	3	131	33	20	20	25	1.97
17061073--17061268	97	2.0	96	89	1	293	30	19	21	28	1.98
17061447--17061691	43	5.7	43	87	2	307	29	20	26	24	1.99
17062793--17062834	19	2.2	19	83	8	50	54	2	2	40	1.26
17069819--17069920	53	1.9	53	95	0	186	37	10	18	33	1.86
17079011--17079053	16	2.6	16	85	10	52	48	0	0	51	1.00
17079020--17079051	11	3.1	11	82	17	50	50	0	0	50	1.00
17079013--17079051	20	2.0	19	95	5	69	48	0	0	51	1.00
17092395--17092454	24	2.5	24	86	0	75	31	28	3	36	1.74
17094130--17094171	16	2.8	16	89	7	61	40	4	0	54	1.21
17100081--17100119	15	2.6	15	80	15	53	25	7	7	58	1.52
17103833--17103878	24	1.9	24	86	0	65	45	17	26	10	1.81
17112115--17112235	45	2.7	45	82	8	158	28	21	25	24	1.99
17112277--17112788	44	11.8	42	70	15	237	28	19	22	29	1.98
17112106--17112429	162	2.0	162	93	0	549	28	21	21	27	1.99
17112270--17112791	216	2.4	217	92	1	843	28	19	22	29	1.98
17112537--17112865	172	1.9	173	80	9	386	28	19	22	30	1.98
17114733--17114771	15	2.6	15	80	15	53	25	7	7	58	1.52
17116427--17116468	17	2.5	17	81	14	52	71	2	4	21	1.16
17116571--17116741	85	2.0	86	98	1	335	42	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17123850--17124208	152	2.4	151	86	5	512	52	7	10	30	1.62
17138548--17138828	59	4.8	58	82	4	233	31	16	13	38	1.88
17143389--17143433	21	2.1	21	84	8	56	71	0	2	26	0.98
17145262--17145321	6	10.7	6	92	7	74	71	16	0	11	1.14
17149106--17149143	7	5.4	7	96	0	67	84	0	15	0	0.63
17153168--17153280	58	1.9	58	96	0	208	46	9	11	31	1.72
17157002--17157037	16	2.2	16	95	0	63	86	0	13	0	0.58
17158284--17158818	88	6.1	88	89	0	793	25	22	27	23	2.00
17158784--17159073	44	6.7	44	78	7	299	28	17	25	28	1.97
17158781--17159073	126	2.3	131	86	4	400	27	17	25	28	1.98
17161222--17161247	3	8.7	3	100	0	52	30	0	0	69	0.89
17163386--17163498	5	21.0	5	73	13	82	39	4	23	32	1.74
17163396--17163438	12	3.8	11	81	12	52	41	0	25	32	1.56
17163417--17163506	17	5.4	17	73	5	76	40	5	21	33	1.76
17163385--17163506	22	5.3	22	73	14	95	40	4	22	31	1.73
17163475--17163536	22	2.8	22	76	9	63	40	6	16	37	1.74
17164308--17164334	8	3.4	8	100	0	54	22	0	14	62	1.31
17165517--17165549	17	1.9	17	88	11	50	51	0	0	48	1.00
17165621--17165654	13	2.6	13	85	0	50	29	35	0	35	1.58
17167503--17167531	14	2.1	14	100	0	58	34	6	20	37	1.80
17172350--17172520	76	2.2	76	87	2	236	34	15	19	30	1.93
17172350--17172520	38	4.5	38	85	5	204	34	15	19	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17174694--17174727	6	5.5	6	96	3	59	85	0	14	0	0.60
17174903--17174939	2	19.5	2	89	10	60	0	48	0	51	1.00
17177750--17177787	18	2.2	18	90	4	60	71	0	2	26	1.00
17178800--17178999	99	2.0	99	99	0	391	32	15	14	38	1.87
17183566--17183601	3	12.0	3	100	0	72	66	0	0	33	0.92
17184132--17184180	16	3.1	16	83	16	66	14	38	22	24	1.91
17184430--17184494	27	2.4	27	77	7	69	24	32	23	20	1.98
17184709--17184756	23	2.1	23	84	7	62	37	16	14	31	1.89
17186662--17186929	42	6.4	42	89	1	396	30	20	20	27	1.98
17191562--17191620	21	2.8	21	76	0	64	15	23	28	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131