genome.fa.s9.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  20  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6751447--6751504	13	4.2	13	77	12	53	48	43	0	8	1.34
6751454--6751506	22	2.5	21	88	11	74	49	41	0	9	1.35
6751444--6751533	7	13.0	7	72	6	58	46	41	0	12	1.41
6751811--6752217	114	3.6	114	81	2	451	26	23	17	32	1.97
6751811--6752233	228	1.9	227	82	3	535	26	23	17	32	1.97
6753972--6754140	84	2.0	83	93	1	284	33	8	23	34	1.86
6771675--6771714	3	13.3	3	89	0	53	32	25	0	42	1.55
6771675--6771714	12	3.3	12	89	0	62	32	25	0	42	1.55
6771675--6771711	15	2.5	15	90	0	65	32	24	0	43	1.55
6772775--6772834	3	20.0	3	89	6	68	6	31	1	60	1.33
6773858--6773957	49	2.1	49	86	1	139	32	16	8	44	1.76
6774807--6774919	29	3.8	30	72	16	83	48	0	9	40	1.42
6780811--6780855	23	2.0	23	90	0	72	46	13	2	37	1.55
6782987--6783027	17	2.2	20	79	16	52	70	0	4	24	1.06
6783673--6783725	22	2.2	24	74	9	56	64	5	11	18	1.46
6783873--6783938	13	5.5	13	72	26	65	48	12	0	39	1.40
6783871--6783946	23	3.3	23	87	1	118	47	11	0	40	1.40
6787552--6787592	9	4.3	10	78	9	50	24	0	2	73	0.96
6787533--6787573	17	2.4	17	87	0	55	41	0	0	58	0.98
6798744--6798837	37	2.5	37	82	3	109	21	19	19	40	1.92
6799360--6799525	42	3.9	42	92	0	269	34	22	19	23	1.96
6799360--6799566	85	2.5	84	82	4	202	34	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6822672--6822716	7	6.3	7	92	2	63	42	53	0	4	1.21
6822660--6822715	14	4.0	14	77	9	60	48	46	0	5	1.25
6823393--6823428	18	2.0	18	89	10	56	69	5	0	25	1.10
6823397--6823436	18	2.2	19	86	4	55	70	5	0	25	1.08
6823531--6824094	114	4.9	115	75	10	421	26	23	18	30	1.98
6830311--6830352	18	2.3	19	88	12	61	30	2	0	66	1.04
6830850--6830889	12	3.3	12	100	0	80	37	7	0	55	1.29
6830873--6830927	26	2.1	27	86	3	76	27	1	3	67	1.17
6833708--6833738	15	2.1	15	100	0	62	29	32	6	32	1.83
6836475--6836517	11	3.8	11	80	17	52	30	2	4	62	1.28
6836478--6836521	23	1.9	23	90	0	70	31	2	6	59	1.36
6838189--6838233	18	2.4	19	85	3	65	46	11	20	22	1.81
6839270--6839317	7	7.0	7	92	4	71	43	33	0	22	1.54
6839271--6839317	20	2.3	21	92	3	78	44	34	0	21	1.52
6839627--6839670	16	2.6	16	79	10	52	47	4	0	47	1.22
6843450--6843480	16	1.9	16	93	0	53	48	29	6	16	1.70
6845671--6845771	45	2.3	46	81	8	129	38	18	20	21	1.93
6845973--6846060	40	2.2	41	85	2	115	40	19	7	31	1.80
6845973--6846040	21	3.3	21	68	15	61	38	20	8	32	1.84
6846820--6846864	24	1.9	23	82	13	56	6	13	6	73	1.24
6847132--6847175	16	2.6	16	79	10	52	47	4	0	47	1.22
6850789--6850849	22	2.7	23	82	7	81	44	16	24	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6850789--6851034	25	10.6	22	72	14	115	38	17	25	18	1.92
6850869--6851034	25	6.9	24	78	14	173	37	18	24	19	1.93
6850789--6851034	47	5.3	47	77	8	213	38	17	25	18	1.92
6850877--6851034	72	2.2	72	79	15	175	39	17	23	19	1.92
6854937--6855008	35	2.1	35	97	0	135	33	4	18	44	1.69
6861895--6861920	12	2.2	12	100	0	52	69	0	0	30	0.89
6862515--6862586	5	13.6	5	74	21	51	19	2	1	76	0.99
6863849--6863892	18	2.3	18	84	7	52	27	0	6	65	1.17
6867262--6867301	15	2.7	15	84	0	53	75	7	0	17	1.03
6868833--6869655	410	2.0	410	98	0	1585	29	19	10	40	1.85
6869790--6869839	26	1.9	26	84	8	66	40	12	2	46	1.52
6871408--6871439	16	2.0	16	93	0	55	31	28	12	28	1.93
6872727--6872777	25	2.0	25	88	0	75	41	21	25	11	1.87
6875919--6875949	12	2.6	12	94	0	53	51	9	29	9	1.66
6878262--6878313	26	2.0	26	100	0	104	26	19	26	26	1.99
6880589--6881761	593	2.0	593	99	0	2337	32	17	22	27	1.96
6883212--6883254	21	2.0	21	90	0	68	39	4	32	23	1.75
6883357--6883640	136	2.1	136	89	2	428	31	20	20	27	1.97
6883532--6883826	50	5.9	50	77	2	243	31	20	20	28	1.97
6883529--6883826	100	3.0	100	88	2	420	31	20	20	27	1.97
6883919--6884172	44	5.7	44	77	8	203	29	18	24	27	1.98
6886296--6886352	16	3.6	16	95	0	87	29	0	36	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6886598--6886632	18	2.0	17	88	5	52	54	0	0	45	0.99
6893383--6893422	15	2.7	15	84	0	53	75	7	0	17	1.03
6900941--6900965	2	12.5	2	100	0	50	48	0	0	52	1.00
6901127--6901183	20	2.8	20	94	0	96	8	26	22	42	1.83
6901128--6901211	20	4.2	20	85	0	87	8	26	22	42	1.81
6901128--6901211	40	2.1	40	82	4	98	8	26	22	42	1.81
6909720--6909777	5	11.6	5	77	12	57	75	0	3	20	0.94
6909728--6909777	22	2.5	19	81	12	64	76	0	4	20	0.95
6909720--6909770	17	3.2	17	83	8	63	74	0	3	21	0.98
6910963--6911985	524	2.0	498	94	5	1796	20	18	21	37	1.93
6921726--6921880	41	3.8	42	73	14	144	16	16	28	39	1.89
6921723--6921895	82	2.1	81	80	13	203	18	16	28	36	1.93
6935702--6935766	21	3.1	21	76	10	71	33	18	44	3	1.65
6935867--6935904	9	4.2	9	96	0	67	23	44	31	0	1.54
6936108--6936150	22	2.0	22	90	0	68	41	25	20	11	1.86
6936740--6936787	21	2.2	21	82	13	62	35	4	18	41	1.70
6936743--6936786	22	2.0	22	86	8	63	34	4	20	40	1.73
6937462--6937577	30	3.9	30	86	0	151	19	39	27	12	1.89
6938399--6938429	14	2.2	14	94	0	53	38	0	12	48	1.42
6942753--6942815	31	2.0	31	100	0	126	33	9	19	38	1.84
6945757--6945833	20	3.9	20	73	19	72	19	1	5	74	1.08
6945804--6945845	19	2.2	20	83	12	52	21	2	4	71	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946632--6946769	69	2.0	69	98	0	267	18	22	27	31	1.97
6947561--6947611	5	9.6	5	91	8	75	17	0	5	76	0.98
6950307--6950337	14	2.2	14	94	0	53	38	0	12	48	1.42
6956582--6956633	27	2.0	26	81	11	61	21	3	1	73	1.10
6956666--6956708	15	2.8	15	83	13	52	0	18	4	76	0.95
6960118--6960320	33	5.6	33	71	21	156	34	26	18	19	1.95
6960091--6960324	75	3.1	75	89	3	362	33	27	17	21	1.96
6964677--6964727	23	2.2	23	92	0	84	27	5	21	45	1.75
6964686--6964737	23	2.3	23	86	0	68	32	5	17	44	1.72
6972148--6972175	14	2.0	14	100	0	56	28	21	14	35	1.92
6975048--6975093	15	3.0	15	87	6	74	28	6	30	34	1.82
6975043--6975092	16	3.2	16	88	5	84	34	6	26	34	1.81
6975760--6975795	12	3.1	11	88	11	54	44	2	19	33	1.65
6975834--6976143	156	2.0	156	90	0	494	33	12	13	40	1.83
6978782--6978821	20	2.0	20	85	5	53	35	0	7	57	1.27
6980783--6980823	5	8.2	5	100	0	82	0	58	0	41	0.98
6981903--6981929	3	9.0	3	100	0	54	33	33	0	33	1.58
6982804--6983011	104	2.0	105	99	0	409	16	16	17	50	1.79
6986461--6986494	9	3.8	9	92	0	59	11	14	0	73	1.10
7002722--7002751	4	7.8	4	92	7	53	0	23	0	76	0.78
7002809--7002845	1	37.0	1	100	0	74	0	0	0	100	0.00
7005282--7005346	32	2.0	32	87	0	94	32	20	9	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7006549--7006582	3	11.3	3	100	0	68	67	0	0	32	0.91
7009921--7009951	16	2.0	15	93	6	53	64	12	9	12	1.50
7012185--7012221	18	2.1	18	89	0	56	59	13	5	21	1.54
7015410--7015445	5	7.2	5	100	0	72	38	0	22	38	1.54
7019013--7019055	18	2.4	18	88	0	59	51	2	0	46	1.13
7028510--7028554	20	2.2	20	84	7	56	13	0	6	80	0.91
7036197--7036253	28	2.0	28	96	0	105	17	10	28	43	1.82
7040290--7040331	15	2.8	15	88	0	57	52	14	2	30	1.54
7040892--7040923	16	2.1	16	94	5	57	31	0	6	62	1.20
7042231--7042294	32	2.0	32	96	0	119	18	39	26	15	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131