genome.fa.s9.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  49  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16204643--16204711	21	3.3	21	95	0	120	4	36	13	46	1.62
16204760--16205138	51	7.4	51	91	0	499	26	18	28	26	1.98
16206268--16206635	90	4.1	90	93	0	574	26	23	24	25	2.00
16215048--16215079	2	16.0	2	100	0	64	50	0	0	50	1.00
16215647--16215708	26	2.4	26	86	2	81	41	1	3	53	1.27
16215647--16215718	26	2.7	26	85	6	74	41	2	2	52	1.30
16216403--16216451	22	2.3	21	82	10	55	36	0	6	57	1.24
16216718--16216779	19	3.2	18	73	20	54	35	1	0	62	1.05
16220592--16220815	117	1.9	117	81	5	274	30	24	18	26	1.98
16222062--16222124	33	2.0	33	84	6	85	53	0	1	44	1.10
16226673--16226703	4	7.8	4	100	0	62	51	0	22	25	1.48
16227607--16227676	29	2.4	29	79	11	72	34	8	1	55	1.39
16228302--16228365	29	2.2	29	82	2	74	48	15	14	21	1.80
16231297--16231352	29	1.9	29	85	7	78	25	16	19	39	1.91
16232046--16232101	29	1.9	29	85	7	78	42	17	16	23	1.88
16245127--16245175	25	1.9	25	83	4	62	65	6	0	28	1.16
16249708--16249757	25	2.0	26	92	4	84	36	2	4	58	1.29
16249776--16249831	26	2.3	24	80	19	64	35	0	5	58	1.21
16249778--16249827	25	2.0	24	85	14	66	34	0	6	60	1.21
16249815--16249884	36	2.0	35	83	13	90	40	0	2	57	1.14
16262507--16262547	18	2.2	19	83	12	50	60	0	17	21	1.35
16263301--16263331	15	2.1	15	100	0	62	19	12	29	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16266500--16266529	2	15.0	2	100	0	60	0	50	0	50	1.00
16270357--16270398	15	2.7	16	82	14	52	52	2	0	45	1.13
16270366--16270407	15	2.9	15	82	10	52	52	0	0	47	1.00
16311141--16311184	21	2.2	20	83	4	52	54	9	6	29	1.58
16315768--16315802	18	1.9	18	88	11	54	62	5	0	31	1.18
16317494--16317530	17	2.1	18	90	5	58	45	5	5	43	1.49
16317619--16317655	3	12.3	3	88	0	56	62	2	2	32	1.23
16318439--16318470	5	6.4	5	100	0	64	81	0	0	18	0.70
16322891--16322945	21	2.5	21	85	8	65	29	1	10	58	1.43
16323656--16323709	13	4.1	13	76	11	56	50	0	5	44	1.25
16335527--16335560	14	2.3	15	90	5	52	47	2	0	50	1.16
16339359--16339402	17	2.6	17	85	0	61	25	0	2	72	0.96
16341689--16341824	32	4.4	32	65	17	97	35	2	4	58	1.31
16341647--16341831	92	2.0	93	98	1	363	35	3	5	55	1.39
16342518--16342569	25	2.1	24	82	10	61	51	1	0	46	1.12
16354578--16354605	5	5.6	5	100	0	56	21	0	0	78	0.75
16357620--16357741	43	2.8	44	80	11	153	31	29	21	18	1.96
16359369--16359402	10	3.4	10	84	15	52	79	2	17	0	0.86
16361437--16361462	6	4.3	6	100	0	52	84	0	0	15	0.62
16361449--16361491	20	2.2	20	87	4	61	62	2	0	34	1.08
16363648--16363795	73	2.0	74	97	1	280	50	6	7	35	1.55
16366557--16366583	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16371981--16372244	132	2.0	132	100	0	528	32	12	19	34	1.90
16373300--16373337	19	2.0	19	85	10	51	55	10	7	26	1.61
16374654--16374705	19	2.8	19	74	11	54	67	5	1	25	1.23
16377559--16377591	2	16.5	2	93	0	57	54	45	0	0	0.99
16390558--16390595	20	1.9	20	94	0	67	34	13	13	39	1.83
16395676--16396314	320	2.0	320	99	0	1262	39	7	10	41	1.69
16397012--16397047	16	2.1	18	90	10	58	47	0	5	47	1.25
16406548--16406586	20	2.0	20	84	0	51	48	10	17	23	1.78
16411296--16411335	22	1.9	20	90	10	62	30	0	5	65	1.14
16413935--16413972	18	2.1	19	90	5	60	42	0	13	44	1.43
16414057--16414100	21	2.0	21	91	8	70	56	4	4	34	1.40
16414113--16414196	30	2.8	28	79	12	64	64	8	8	19	1.46
16414658--16414694	17	2.2	17	100	0	74	29	32	21	16	1.95
16418280--16418322	7	6.4	7	86	7	63	62	11	0	25	1.29
16418275--16418322	21	2.4	19	83	10	60	66	10	0	22	1.22
16420292--16420338	14	3.7	12	83	13	58	70	6	0	23	1.10
16421776--16421835	31	1.9	31	89	0	93	36	11	6	45	1.67
16430485--16430812	123	2.7	123	89	2	489	29	14	21	34	1.93
16432863--16432904	11	3.8	11	93	0	66	50	7	23	19	1.72
16434800--16434838	20	2.1	17	86	13	51	30	0	7	61	1.24
16454505--16454817	156	2.0	157	98	0	610	27	19	11	41	1.86
16454931--16455083	56	2.8	55	83	11	183	24	29	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16454894--16455083	49	3.7	53	83	7	205	24	28	20	26	1.99
16456982--16457094	35	3.4	32	82	11	138	46	12	0	40	1.41
16456997--16457094	34	2.9	34	86	4	135	45	13	0	40	1.43
16456996--16457107	35	3.2	34	79	10	120	44	15	0	40	1.46
16457169--16457204	14	2.7	13	91	4	54	47	33	0	19	1.50
16463156--16463225	35	2.0	35	86	2	97	38	4	5	51	1.45
16473407--16473457	25	2.0	25	96	0	93	49	15	5	29	1.68
16483931--16483966	17	2.0	18	89	10	56	2	25	0	72	0.98
16488632--16488670	21	1.9	20	89	5	60	51	12	0	35	1.40
16489349--16489384	17	2.0	18	89	10	56	0	27	0	72	0.85
16489358--16489405	21	2.2	21	82	10	53	0	27	4	68	1.07
16489408--16489432	12	2.1	12	100	0	50	0	8	8	84	0.79
16512623--16512669	21	2.2	21	79	17	53	31	19	0	48	1.49
16512900--16512951	22	2.4	22	80	0	59	38	25	23	13	1.91
16513455--16513501	19	2.5	19	83	12	62	27	10	0	61	1.29
16514239--16514269	9	3.4	9	100	0	62	22	12	22	41	1.88
16514361--16514406	18	2.6	17	80	19	51	21	32	0	45	1.52
16519029--16519077	27	1.9	25	84	12	64	40	2	2	55	1.23
16525510--16526229	44	15.6	44	72	13	475	27	21	19	31	1.97
16525626--16525818	51	3.9	51	73	11	195	29	19	17	33	1.95
16525510--16526229	95	7.7	95	73	13	416	27	21	19	31	1.97
16525510--16526227	139	5.2	132	73	12	505	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16525604--16526229	189	3.3	186	78	7	576	28	20	19	31	1.97
16525971--16526229	94	2.9	92	78	13	229	27	23	20	28	1.99
16525977--16526280	138	2.2	138	90	1	475	28	23	19	28	1.98
16533253--16533285	17	1.9	17	100	0	66	60	18	6	15	1.54
16534871--16534926	30	1.9	30	89	7	89	28	10	1	58	1.41
16541478--16541597	64	1.9	64	91	3	197	42	13	14	30	1.83
16541496--16541616	64	1.9	64	87	0	179	43	16	12	27	1.84
16543446--16543498	17	3.1	17	71	10	54	33	3	5	56	1.41
16551103--16551314	92	2.3	92	84	3	264	35	21	8	34	1.83
16551371--16551414	19	2.4	18	81	7	54	40	2	0	56	1.11
16561001--16561036	5	7.2	5	93	0	63	19	2	0	77	0.88
16573024--16573118	45	2.1	44	88	1	136	33	27	6	32	1.82
16573099--16573150	16	3.2	16	94	0	86	34	36	0	28	1.58
16573694--16573732	18	2.2	18	100	0	78	35	28	5	30	1.79
16577411--16577493	38	2.2	38	82	4	96	34	21	18	25	1.96
16578053--16578113	32	1.9	32	86	0	86	50	4	16	27	1.65
16578031--16578071	2	20.5	2	92	0	64	53	2	0	43	1.13
16580684--16580756	36	2.0	36	100	0	146	32	21	13	31	1.93
16585221--16585279	24	2.5	24	80	5	75	20	11	25	42	1.86
16586618--16586648	6	5.2	6	92	0	53	12	16	3	67	1.35
16586618--16586654	12	3.1	12	88	0	56	13	16	5	64	1.45
16587594--16587653	27	2.2	27	87	0	84	31	36	18	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16588928--16588980	21	2.5	21	87	0	79	32	9	28	30	1.88
16594901--16595193	35	8.3	35	76	4	239	34	30	5	29	1.80
16594965--16595193	106	2.2	105	84	2	289	34	29	5	30	1.81
16600278--16600333	11	5.2	10	83	10	58	25	30	1	42	1.65
16602153--16602195	18	2.4	18	84	0	50	18	25	9	46	1.79
16604795--16605211	126	3.3	126	91	0	672	27	22	18	31	1.97
16605244--16605519	96	2.9	95	85	3	331	43	18	2	35	1.64
16617011--16617076	27	2.4	27	79	0	78	25	31	9	33	1.87
16617135--16617315	53	3.4	53	75	13	190	19	23	17	39	1.92
16617188--16617357	54	3.2	54	74	17	199	22	24	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131