genome.fa.s9.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  126  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41559829--41559980	43	3.6	43	75	12	127	32	26	17	23	1.97
41559810--41559961	43	3.6	42	79	8	141	30	28	17	23	1.97
41562002--41562767	78	9.9	77	85	5	915	27	17	20	34	1.95
41562002--41562774	154	5.0	152	86	6	1018	27	17	20	34	1.95
41562009--41562767	310	2.4	307	89	3	1144	27	17	20	34	1.95
41562962--41563088	30	4.3	30	78	2	114	34	22	4	38	1.75
41562962--41563085	59	2.1	59	80	3	133	33	21	4	39	1.75
41563593--41563673	20	3.9	21	77	19	82	71	0	28	0	0.86
41563591--41563671	30	2.8	28	81	17	94	70	0	29	0	0.88
41563591--41563645	4	14.8	4	85	14	66	72	0	27	0	0.85
41563899--41563944	14	3.3	14	81	9	58	82	0	17	0	0.67
41564411--41564444	15	2.2	15	89	5	50	26	14	11	47	1.79
41564409--41564549	18	8.3	18	68	18	79	32	12	11	43	1.77
41564409--41564550	34	4.1	34	76	7	126	33	11	11	43	1.77
41564409--41564532	16	7.2	16	73	17	99	31	12	11	44	1.78
41564403--41564565	35	4.7	32	74	16	121	33	11	10	44	1.75
41573683--41573734	15	3.2	15	73	19	50	44	0	1	53	1.11
41585209--41585252	22	2.1	21	84	12	56	63	2	4	29	1.26
41586426--41586585	79	2.0	80	98	1	313	42	6	10	41	1.63
41589044--41589091	3	16.7	3	82	8	64	37	0	0	62	0.95
41589033--41589090	28	2.1	28	86	0	80	34	5	0	60	1.19
41589044--41589091	15	3.3	15	85	11	73	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41591021--41591263	50	4.8	50	87	0	342	26	23	30	20	1.98
41594147--41594174	3	9.3	3	100	0	56	32	0	0	67	0.91
41594258--41594718	230	2.0	231	99	0	915	36	9	3	49	1.55
41595291--41595322	15	2.1	15	100	0	64	50	18	12	18	1.78
41597299--41597329	2	15.5	2	100	0	62	51	0	0	48	1.00
41598644--41598769	28	4.5	28	87	0	171	30	24	14	30	1.94
41601257--41601355	51	1.9	51	93	0	171	26	24	20	29	1.99
41604038--41604071	16	2.2	16	89	5	52	8	5	26	58	1.51
41604460--41604618	44	3.6	44	78	1	183	30	23	15	30	1.95
41604436--41604618	44	4.1	44	77	2	177	28	25	16	29	1.97
41604436--41604618	89	2.1	89	88	2	269	28	25	16	29	1.97
41604622--41604803	44	4.2	44	66	12	115	27	25	19	28	1.99
41604610--41605058	132	3.4	132	92	1	697	28	24	18	28	1.98
41605514--41605559	14	3.2	14	81	3	56	56	8	2	32	1.42
41607777--41607918	44	3.2	43	72	4	140	30	23	17	28	1.97
41607817--41608019	101	2.0	102	97	2	383	32	22	16	28	1.95
41608078--41608532	133	3.4	133	96	0	813	25	23	20	30	1.99
41609676--41609820	44	3.3	43	75	7	148	26	24	15	33	1.95
41609659--41609845	88	2.1	89	88	1	286	29	24	17	28	1.97
41609718--41609846	44	2.9	44	80	3	161	27	25	17	29	1.98
41609838--41610744	132	6.8	134	83	8	1045	27	24	19	28	1.99
41609852--41610787	133	7.1	132	85	5	1096	27	24	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41617931--41617964	16	2.2	16	89	5	52	8	5	26	58	1.51
41618407--41618443	12	2.9	14	88	11	53	67	8	0	24	1.17
41618898--41618939	19	2.2	19	83	8	50	66	4	2	26	1.23
41620915--41620962	25	1.9	25	100	0	96	37	27	4	31	1.76
41627212--41627794	3	195.0	3	97	0	1116	66	0	0	33	0.95
41629853--41629991	73	1.9	73	86	5	201	17	22	28	30	1.97
41629745--41630106	187	1.9	185	82	4	451	21	22	26	29	1.99
41629904--41630591	114	6.0	114	87	3	852	22	21	25	31	1.98
41629938--41630591	228	2.9	227	87	2	938	22	21	24	31	1.98
41630882--41630912	14	2.2	14	100	0	62	16	0	45	38	1.47
41630886--41630929	21	2.1	21	82	0	52	20	0	47	31	1.50
41631013--41631073	7	8.7	7	80	7	61	21	0	45	32	1.52
41631017--41631073	21	2.8	20	81	7	69	21	0	47	31	1.51
41643303--41643343	17	2.4	17	83	0	55	14	7	2	75	1.12
41647415--41647475	26	2.3	26	75	5	61	29	16	9	44	1.80
41647512--41647579	26	2.7	26	78	14	81	14	20	23	41	1.89
41680837--41680861	3	8.3	3	100	0	50	36	0	32	32	1.58
41689757--41689887	43	3.1	42	77	13	151	35	23	19	22	1.96
41689891--41689971	26	3.2	26	64	22	62	34	27	14	23	1.94
41689895--41690077	51	3.6	51	76	7	185	32	25	17	24	1.97
41689893--41690081	101	1.9	102	86	3	274	32	25	17	24	1.97
41691194--41691252	26	2.3	26	82	5	66	25	13	15	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41691289--41691356	26	2.7	26	75	22	74	14	19	23	42	1.88
41698053--41698100	21	2.7	16	72	27	51	33	14	6	45	1.70
41709894--41709922	6	4.8	6	100	0	58	31	0	17	51	1.45
41712919--41713248	73	4.5	73	99	0	651	42	23	6	27	1.78
41713251--41713276	3	8.7	3	100	0	52	69	0	0	30	0.89
41726282--41726352	35	2.0	36	97	2	135	32	19	14	33	1.92
41742229--41742259	16	1.9	16	100	0	62	29	0	32	38	1.57
41760992--41761036	23	2.0	23	81	0	54	22	0	15	62	1.33
41765456--41765512	30	1.9	30	92	0	96	15	19	26	38	1.92
41771545--41771577	17	1.9	17	93	0	57	63	15	12	9	1.51
41776926--41776979	26	2.0	27	85	7	74	33	0	0	66	0.92
41781246--41781514	134	2.0	132	92	1	448	29	9	21	39	1.84
41786136--41786320	75	2.5	75	76	5	194	27	23	21	28	1.99
41787598--41787703	48	2.3	46	77	11	117	33	18	19	27	1.96
41791608--41791663	3	18.7	3	100	0	112	33	0	0	66	0.92
41792074--41792129	22	2.5	23	73	2	60	30	7	7	55	1.54
41804242--41804695	48	9.3	48	65	8	198	31	25	20	22	1.98
41804213--41804788	98	5.9	98	90	1	868	32	25	21	21	1.98
41805695--41805719	9	2.8	9	100	0	50	8	0	0	92	0.40
41806157--41806212	3	18.7	3	100	0	112	33	0	0	66	0.92
41806557--41806612	22	2.5	23	73	2	60	30	7	7	55	1.54
41806573--41806740	84	2.0	84	98	0	327	26	9	5	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41807230--41807434	103	2.0	103	97	0	383	33	13	8	44	1.75
41824488--41824556	16	4.2	16	94	3	120	24	0	36	39	1.56
41824488--41824556	33	2.1	32	94	2	120	24	0	36	39	1.56
41824537--41824627	45	2.0	45	85	2	121	27	6	28	37	1.82
41824798--41825260	7	66.1	7	100	0	926	28	14	14	42	1.84
41825428--41826475	485	2.2	485	100	0	2096	31	16	16	34	1.92
41827004--41827038	18	1.9	18	100	0	70	60	0	28	11	1.32
41843969--41843999	12	2.6	12	89	0	53	19	0	0	80	0.71
41858218--41858280	28	2.2	28	81	10	67	39	6	4	49	1.49
41864965--41864994	4	7.8	4	92	7	53	23	0	0	76	0.78
41866294--41866330	19	1.9	19	88	0	56	37	8	0	54	1.30
41867081--41867105	12	2.1	12	100	0	50	0	0	8	92	0.40
41869777--41869829	23	2.3	23	90	0	88	22	20	24	32	1.98
41874131--41874189	20	2.9	21	76	5	66	23	10	23	42	1.85
41875623--41875767	51	2.9	49	80	6	166	37	13	20	29	1.90
41882820--41882879	13	4.5	12	75	20	57	41	0	1	56	1.09
41887144--41887184	21	1.9	22	95	5	75	29	4	9	56	1.53
41887135--41887191	21	2.8	21	82	12	73	24	5	12	57	1.55
41895311--41895349	19	2.1	19	90	0	60	23	5	15	56	1.59
41895884--41895910	2	13.5	2	100	0	54	51	0	48	0	1.00
41900219--41900263	20	2.2	20	88	0	63	35	20	6	37	1.79
41900221--41900286	23	3.0	23	82	6	75	36	19	6	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41905653--41905677	12	2.1	12	100	0	50	16	0	0	84	0.63
41911445--41911549	25	4.3	25	80	8	119	40	20	21	16	1.91
41915029--41915177	50	2.8	54	85	7	198	24	29	20	24	1.99
41916195--41916648	226	2.0	225	92	0	746	26	20	24	29	1.99
41920326--41920363	17	2.3	16	83	16	51	63	0	2	34	1.09
41920327--41920360	17	2.0	17	88	11	52	64	0	2	32	1.08
41920342--41920597	108	2.3	108	96	2	467	47	3	5	43	1.45
41921537--41921595	26	2.3	26	85	5	77	50	10	0	38	1.36
41923398--41923436	19	2.1	18	85	4	51	43	5	0	51	1.24
41933476--41933518	22	2.1	21	83	12	54	18	6	23	51	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131