genome.fa.s9.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  70  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23380085--23380145	20	3.0	20	82	0	77	22	19	19	37	1.94
23392092--23392180	44	2.0	44	93	0	151	44	10	14	30	1.78
23396104--23396151	23	2.1	23	84	3	62	2	20	2	75	1.02
23403869--23404016	27	5.5	27	83	0	154	43	18	16	20	1.88
23403869--23404017	54	2.8	54	81	1	174	43	18	16	20	1.88
23408280--23408458	50	3.6	50	78	5	159	21	27	22	27	1.99
23415770--23416055	27	10.6	27	81	4	301	39	12	21	26	1.89
23424478--23424515	20	1.9	19	89	5	58	39	5	7	47	1.55
23440263--23440447	101	1.8	101	86	5	266	25	14	26	34	1.94
23446825--23447035	104	2.0	104	99	0	413	32	15	15	36	1.89
23460775--23460873	23	4.3	23	85	0	126	30	25	20	24	1.99
23460775--23460872	46	2.1	46	88	0	142	30	25	20	23	1.98
23466324--23466520	50	3.8	51	81	5	191	26	19	30	23	1.98
23466771--23466809	20	2.0	20	90	10	62	56	5	23	15	1.59
23476169--23476223	19	3.0	19	81	5	51	45	3	0	50	1.19
23476289--23476330	20	2.0	21	86	4	59	38	0	0	61	0.96
23476799--23476837	20	2.0	20	90	10	62	56	5	23	15	1.59
23482916--23482955	21	2.0	21	95	5	73	25	12	2	60	1.45
23496665--23496710	22	2.1	22	100	0	92	13	23	13	50	1.76
23498247--23498557	135	2.3	135	82	3	358	47	15	16	20	1.83
23498252--23498556	45	6.8	45	82	6	305	46	16	16	20	1.83
23498940--23499081	73	1.9	74	88	1	214	33	4	18	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23498948--23499099	73	2.1	73	83	2	189	34	3	19	42	1.70
23505568--23505634	25	2.7	25	81	2	82	37	16	25	20	1.93
23512073--23512128	21	2.6	22	80	8	53	17	1	10	69	1.26
23517829--23517901	5	14.4	5	82	13	87	21	20	16	41	1.90
23524860--23524994	40	3.4	40	87	0	189	28	13	25	31	1.94
23527552--23527591	20	2.0	21	85	5	55	42	0	7	50	1.30
23529502--23529578	9	9.0	9	74	16	58	67	2	1	28	1.12
23529534--23529581	9	5.6	8	85	9	60	68	2	0	29	1.01
23534411--23534518	17	6.4	17	69	0	81	46	17	8	27	1.77
23534411--23534517	51	2.1	51	87	0	151	46	16	8	28	1.76
23544864--23544902	21	1.9	19	85	10	51	48	7	12	30	1.69
23546216--23546512	45	6.7	45	78	9	308	30	19	16	32	1.94
23546280--23546401	38	3.1	38	73	13	118	34	18	13	32	1.91
23546235--23546401	82	2.0	83	85	1	228	34	19	13	32	1.91
23554888--23554936	18	2.7	18	77	3	53	4	22	6	67	1.30
23554965--23555001	18	2.1	18	90	5	58	5	13	2	78	1.03
23558311--23558415	51	2.1	51	87	0	147	41	17	13	27	1.86
23563094--23563140	19	2.6	18	80	12	60	21	2	6	70	1.20
23563602--23563631	14	2.1	14	93	0	51	53	0	3	43	1.17
23564223--23564292	26	3.0	22	80	19	88	52	0	12	34	1.40
23564227--23564292	27	2.5	26	85	9	80	56	0	13	30	1.38
23564228--23564307	27	3.2	26	76	10	62	55	2	12	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23564565--23564608	16	3.0	14	84	12	61	45	2	0	52	1.13
23564573--23564605	16	2.1	16	100	0	66	51	0	0	48	1.00
23580130--23580178	19	2.6	19	96	0	89	32	12	12	42	1.79
23591155--23591445	144	2.0	145	94	0	512	36	21	6	35	1.80
23593516--23593552	17	2.2	17	90	0	56	18	18	40	21	1.91
23594277--23594353	11	6.8	11	75	10	57	25	2	6	64	1.30
23605704--23605751	18	2.6	18	80	6	51	47	2	6	43	1.40
23605758--23605805	22	2.3	21	85	7	62	27	4	6	62	1.38
23606355--23606384	14	2.1	14	93	0	51	16	43	0	40	1.48
23606536--23606560	6	4.2	6	100	0	50	16	16	0	68	1.22
23606536--23606666	58	2.3	57	83	12	162	29	17	6	46	1.74
23612327--23612541	29	7.4	29	81	4	202	34	11	27	26	1.90
23612378--23612573	87	2.2	87	82	6	252	35	12	27	24	1.92
23612354--23612567	116	1.8	117	91	1	358	35	11	27	25	1.90
23612327--23612573	58	4.2	57	73	7	201	35	11	27	25	1.91
23613382--23613625	29	8.4	29	78	7	183	37	12	25	24	1.91
23613410--23613617	87	2.4	86	83	4	254	37	12	24	25	1.91
23628781--23628936	43	3.6	43	82	9	167	30	27	17	25	1.97
23634209--23634485	124	2.2	123	92	0	455	33	16	19	31	1.94
23637471--23637495	10	2.5	10	100	0	50	48	0	8	44	1.32
23637534--23637560	10	2.7	10	100	0	54	51	0	7	40	1.30
23637582--23637616	18	1.9	18	94	0	61	51	2	8	37	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23637471--23637616	66	2.2	64	86	8	197	45	6	8	39	1.60
23637657--23637693	10	3.5	10	92	7	56	45	2	8	43	1.47
23637530--23637774	131	1.9	132	93	1	429	44	5	11	38	1.62
23637703--23637747	18	2.4	18	92	3	72	53	2	8	35	1.45
23637677--23637856	55	3.3	55	86	3	231	48	3	10	37	1.56
23637530--23637802	131	2.1	131	87	5	392	45	5	10	38	1.61
23637852--23637937	24	3.7	23	75	20	88	27	0	26	45	1.54
23637864--23637959	18	5.7	18	72	16	98	28	0	22	48	1.51
23637851--23637952	47	2.2	47	98	0	195	30	0	24	45	1.54
23637955--23638018	25	2.5	26	84	2	94	35	12	1	50	1.50
23637977--23638123	71	2.1	71	97	0	276	38	11	6	42	1.68
23639184--23639208	7	3.6	7	100	0	50	60	12	0	28	1.32
23640419--23640479	29	2.2	28	82	5	70	45	16	13	24	1.83
23647829--23647882	24	2.2	25	90	3	83	16	25	22	35	1.95
23647829--23647932	25	4.2	24	76	10	93	21	25	20	33	1.97
23672331--23672462	20	6.6	20	66	11	74	39	18	28	14	1.89
23672321--23672448	40	3.2	40	90	0	193	37	17	29	14	1.90
23672332--23672462	40	3.3	40	90	2	192	38	18	28	14	1.90
23689355--23689436	25	3.3	24	72	13	69	35	13	21	29	1.92
23689339--23689436	49	2.0	50	86	6	137	34	17	19	28	1.94
23707994--23708058	20	3.3	20	67	4	60	13	36	20	29	1.91
23707927--23708182	19	13.2	20	66	14	126	16	33	17	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23707917--23708182	116	2.3	118	86	3	360	16	33	17	31	1.93
23708094--23708193	19	5.2	19	74	13	96	13	32	20	35	1.90
23707917--23708195	39	7.2	39	86	2	364	16	33	17	31	1.93
23716913--23717339	222	1.9	222	85	1	579	34	22	19	23	1.96
23724862--23724891	14	2.2	14	94	5	53	43	6	0	50	1.28
23735166--23735221	25	2.2	27	78	12	64	53	5	1	39	1.34
23743621--23743796	45	4.0	45	83	1	221	27	15	24	32	1.95
23750263--23751123	457	1.9	457	98	0	1668	36	11	17	35	1.86
23774555--23774747	50	3.7	50	79	5	145	27	18	29	24	1.98
23777184--23777243	26	2.2	28	82	5	70	33	28	1	36	1.67
23777563--23777660	20	4.9	20	75	0	79	39	19	27	13	1.89
23779410--23779440	14	2.2	14	100	0	62	45	19	0	35	1.51
23781707--23781770	16	3.7	17	82	17	87	21	28	0	50	1.49
23792801--23792861	28	2.2	28	96	0	113	22	24	22	29	1.99
23792796--23792880	28	2.8	31	76	20	97	23	22	23	30	1.99
23798460--23798510	20	2.5	20	87	0	66	7	29	23	39	1.83
23799511--23799565	28	2.0	28	92	0	92	47	25	3	23	1.68
23800615--23800653	20	1.9	19	85	10	51	43	15	0	41	1.46
23805126--23805176	26	2.0	26	84	7	68	50	7	0	41	1.31
23809039--23809082	17	2.5	17	82	14	54	54	4	0	40	1.21
23814503--23814540	18	2.1	18	90	0	58	34	26	2	36	1.71
23816010--23816055	22	2.1	22	88	8	67	41	13	4	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23819553--23819608	29	1.9	29	88	0	85	46	1	0	51	1.11
23820821--23820889	32	2.2	32	79	10	79	27	4	11	56	1.53
23825306--23825353	24	2.1	22	88	7	69	56	0	4	39	1.19
23828410--23828467	29	1.9	31	89	6	93	58	1	0	39	1.08
23828509--23828550	22	1.9	22	90	0	66	33	0	33	33	1.58
23828500--23828602	52	2.0	51	83	9	129	34	0	32	33	1.58
23828552--23828643	22	4.2	23	82	8	111	42	0	27	30	1.56
23828552--23828643	44	2.1	44	85	4	123	42	0	27	30	1.56
23830155--23830180	4	6.5	4	100	0	52	76	0	0	23	0.78
23832373--23832425	19	2.7	20	77	14	56	56	3	7	32	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131