genome.fa.s9.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  89  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29774753--29774888	9	14.6	9	68	14	53	61	3	0	34	1.19
29774762--29774858	18	5.2	18	77	6	59	61	2	1	35	1.14
29774819--29774887	29	2.3	32	74	23	78	57	5	0	36	1.22
29775499--29775541	19	2.3	19	92	4	70	34	2	0	62	1.08
29776484--29776526	19	2.3	19	92	4	70	34	2	0	62	1.08
29775491--29777462	985	2.0	985	100	0	3944	39	9	10	40	1.72
29777924--29777949	5	5.2	5	100	0	52	23	0	0	76	0.78
29778731--29778802	7	10.3	7	84	0	72	33	19	0	47	1.50
29778770--29778817	21	2.3	21	92	0	78	31	29	0	39	1.57
29778777--29778812	7	5.1	7	86	0	54	27	36	0	36	1.57
29784039--29784064	3	8.7	3	100	0	52	69	0	30	0	0.89
29784324--29784381	19	3.0	19	70	22	57	17	20	5	56	1.59
29786713--29786882	84	2.0	86	82	4	211	40	15	15	28	1.88
29787235--29787268	9	3.8	9	84	0	50	61	2	29	5	1.34
29787228--29787256	15	1.9	15	100	0	58	62	6	27	3	1.37
29788229--29788274	19	2.5	18	83	13	58	50	15	8	26	1.73
29788294--29788340	22	2.1	23	84	4	60	51	17	8	23	1.72
29808161--29808295	67	2.0	68	91	1	218	45	12	12	29	1.79
29811034--29811087	3	18.0	3	100	0	108	66	0	0	33	0.92
29814878--29814909	16	2.0	16	93	0	55	25	15	0	59	1.36
29815136--29815307	51	3.4	50	80	7	195	30	27	17	23	1.97
29815753--29816136	196	2.0	195	98	0	750	39	19	10	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29819745--29819922	90	2.0	90	93	0	302	40	6	15	38	1.72
29822158--29822217	30	2.0	31	86	3	86	40	0	40	20	1.52
29822525--29822555	9	3.4	9	90	0	53	38	22	12	25	1.90
29835734--29835787	25	2.1	26	83	10	67	61	3	3	31	1.31
29836457--29836517	19	3.5	19	68	21	60	59	3	3	34	1.30
29836454--29836519	33	2.0	33	96	0	123	54	3	4	37	1.36
29836560--29836593	16	2.2	15	89	5	50	55	0	0	44	0.99
29857502--29857531	11	2.7	11	94	0	51	16	23	0	60	1.36
29858452--29858504	18	2.9	18	86	8	63	62	3	0	33	1.13
29869941--29870050	55	2.0	55	98	0	211	25	19	9	46	1.79
29882351--29882375	13	1.9	13	100	0	50	8	8	24	60	1.52
29892617--29892745	69	1.9	69	90	0	204	48	12	11	27	1.75
29895503--29895530	8	3.5	8	100	0	56	89	0	10	0	0.49
29898565--29898595	14	2.2	14	94	0	53	61	0	9	29	1.28
29902879--29904231	675	2.0	675	100	0	2706	39	8	8	43	1.65
29908928--29909089	50	3.2	49	78	3	171	25	19	23	30	1.98
29909280--29909401	44	2.8	43	81	2	127	32	21	14	31	1.93
29909427--29909743	84	3.7	84	75	11	248	23	20	22	33	1.97
29909626--29909781	40	3.7	43	73	7	122	25	21	19	32	1.97
29909605--29909874	127	2.1	127	90	1	416	24	20	22	33	1.97
29911278--29911318	21	2.0	21	85	9	57	14	17	0	68	1.22
29911288--29911321	7	4.9	7	89	10	52	14	14	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29911295--29911321	13	2.1	13	100	0	54	14	14	0	70	1.17
29911703--29911779	26	2.9	25	84	7	82	10	7	12	68	1.38
29911728--29911771	20	2.2	20	91	0	70	9	9	11	70	1.34
29915670--29915711	17	2.4	18	88	4	59	54	16	4	23	1.61
29915678--29915963	143	2.0	143	95	0	509	45	16	11	27	1.81
29916380--29916408	2	14.5	2	100	0	58	48	0	0	51	1.00
29917825--29917978	82	1.9	82	98	0	299	29	6	34	29	1.83
29919597--29919640	22	2.0	22	90	0	70	31	18	18	31	1.95
29925280--29925424	42	3.4	43	78	7	136	35	26	11	26	1.91
29925280--29925435	43	3.7	42	77	6	138	34	26	12	26	1.92
29930363--29930414	6	8.7	6	85	8	61	44	0	38	17	1.49
29931947--29931990	12	3.7	12	87	0	61	0	52	20	27	1.47
29942459--29942506	25	1.9	25	86	0	69	37	12	12	37	1.81
29946930--29946983	22	2.5	22	84	0	72	11	29	5	53	1.59
29954339--29954488	75	2.0	75	98	0	291	48	11	20	20	1.80
29954537--29954721	101	1.8	102	88	5	286	23	17	27	32	1.96
29954590--29954721	51	2.6	51	86	2	185	22	17	26	33	1.96
29954643--29954723	26	3.2	26	66	22	71	22	14	28	34	1.94
29954732--29954859	43	3.0	42	77	14	145	21	18	25	33	1.97
29958500--29958535	19	1.9	18	94	5	63	58	5	8	27	1.50
29961513--29961547	18	1.9	18	88	11	54	0	20	0	80	0.72
29965170--29965244	37	2.0	37	92	0	123	38	22	9	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29966844--29966997	27	5.7	27	81	8	181	43	20	17	18	1.88
29966844--29966998	54	2.9	54	84	7	208	43	21	17	18	1.88
29966844--29966995	81	1.9	80	86	6	218	43	21	17	18	1.88
29975735--29975967	84	2.7	86	82	6	283	38	23	13	24	1.91
29979326--29979358	11	3.0	11	83	16	50	54	27	0	18	1.44
29986952--29987896	131	7.3	131	87	3	1260	30	22	22	24	1.99
29987601--29987896	118	2.4	118	84	5	358	29	21	22	25	1.99
29987897--29988132	44	5.1	44	71	15	172	31	20	21	26	1.98
29987941--29988127	98	1.9	98	81	4	225	32	20	21	26	1.98
29987895--29988183	142	2.0	142	93	0	497	33	19	20	26	1.97
29996343--29996379	17	2.1	18	95	5	67	24	16	21	37	1.93
30002109--30002210	50	2.0	50	88	3	152	31	17	10	40	1.84
30002951--30002999	25	2.0	25	83	0	62	44	6	2	46	1.39
30003638--30003675	16	2.4	16	82	13	51	52	0	0	47	1.00
30004207--30004263	15	3.9	15	86	4	80	49	0	17	33	1.47
30004207--30004256	14	3.4	14	86	8	64	52	0	18	30	1.46
30007254--30007290	3	12.3	3	100	0	74	0	32	0	67	0.91
30012463--30013720	626	2.0	626	93	0	2176	32	9	17	40	1.82
30020894--30021024	66	2.0	66	86	3	183	31	25	20	22	1.98
30021940--30022008	21	3.4	21	75	17	74	21	34	7	36	1.81
30040759--30040788	6	5.0	6	91	0	51	13	0	36	50	1.42
30041890--30042011	26	4.6	26	82	4	145	35	13	23	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30041890--30042027	54	2.6	52	79	11	136	39	13	22	25	1.90
30042313--30042345	13	2.6	13	90	4	50	21	9	9	60	1.54
30042653--30042714	32	1.9	32	90	0	97	35	9	19	35	1.85
30048123--30048147	13	1.9	13	100	0	50	32	28	8	32	1.86
30048492--30048573	41	2.0	41	100	0	164	34	9	24	31	1.88
30049969--30050012	21	2.1	21	83	8	54	31	0	6	61	1.22
30050019--30050065	12	4.0	12	78	13	53	48	0	0	51	1.00
30050004--30050076	38	1.9	37	86	8	103	46	1	2	49	1.24
30050227--30050321	44	2.1	46	88	3	140	35	25	6	32	1.81
30050303--30050373	16	4.4	16	87	0	88	28	30	7	33	1.84
30055350--30055388	3	13.0	3	94	0	69	35	33	0	30	1.58
30075321--30075429	47	2.3	47	91	0	173	46	22	11	19	1.81
30084566--30084777	29	7.4	28	74	17	186	26	24	16	32	1.96
30084523--30084772	114	2.2	115	83	9	334	28	22	16	32	1.96
30084566--30084777	57	3.7	56	86	7	286	26	24	16	32	1.96
30110786--30110921	65	2.1	65	95	0	245	28	4	27	39	1.76
30124100--30124835	368	2.0	368	100	0	1472	39	25	8	26	1.84
30128297--30128341	22	2.0	22	83	8	56	40	4	0	55	1.20
30134037--30134079	12	3.5	12	76	17	52	81	6	11	0	0.87
30134037--30134081	18	2.5	17	83	16	56	80	6	13	0	0.91
30136638--30136688	15	3.4	14	86	13	66	56	15	7	19	1.63
30137236--30137265	15	2.0	15	93	0	51	30	6	0	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30148294--30148744	27	16.7	27	80	5	441	43	18	17	19	1.88
30148895--30148951	26	2.2	26	83	3	69	19	26	19	35	1.95
30156438--30156622	51	3.7	50	77	9	196	29	28	17	24	1.97
30156436--30156620	101	1.8	101	89	3	291	30	27	17	24	1.97
30160250--30160348	41	2.4	40	84	3	117	31	27	17	24	1.97
30164229--30164263	18	1.9	18	88	0	52	74	0	5	20	1.02
30175117--30175150	3	11.3	3	100	0	68	0	35	0	64	0.94
30178177--30178623	228	2.0	226	91	2	718	35	17	19	27	1.94
30181561--30181666	50	2.1	50	96	0	194	26	5	32	35	1.80
30181609--30182305	326	2.2	316	95	2	1232	29	9	28	31	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131