genome.fa.s9.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  110  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36599804--36599834	11	2.8	11	95	0	53	41	25	6	25	1.79
36600362--36600406	23	1.9	24	81	4	56	33	24	0	42	1.55
36600553--36600602	3	16.7	3	95	0	91	64	2	0	34	1.05
36600806--36600849	22	1.9	24	90	9	74	25	20	0	54	1.45
36603706--36603742	19	2.0	19	89	5	58	59	13	0	27	1.35
36614113--36614155	18	2.4	18	88	3	61	37	2	0	60	1.10
36617899--36617934	17	2.1	17	100	0	72	22	22	5	50	1.70
36641469--36641795	162	2.0	164	87	3	471	37	15	15	31	1.89
36649055--36649093	21	1.9	20	84	5	51	35	7	15	41	1.76
36649244--36649320	20	3.9	20	76	5	59	32	9	14	44	1.76
36654724--36654762	21	1.9	20	84	5	51	35	7	15	41	1.76
36654913--36654989	20	3.9	20	76	5	59	32	9	14	44	1.76
36658098--36658129	2	16.0	2	100	0	64	50	0	0	50	1.00
36667113--36667156	22	2.0	22	100	0	88	63	9	22	4	1.42
36669069--36669152	28	3.1	28	71	20	79	55	5	0	38	1.24
36674175--36674260	29	2.9	28	77	13	84	47	0	0	52	1.00
36674214--36674282	36	1.9	36	82	5	86	42	0	2	55	1.15
36678568--36678634	34	1.9	35	90	3	109	46	10	8	34	1.70
36679087--36679214	41	3.1	41	87	3	186	62	0	4	32	1.16
36679072--36679132	31	2.0	31	87	6	88	59	0	3	37	1.14
36679797--36679941	32	4.6	31	71	12	109	33	13	6	46	1.69
36684877--36684902	10	2.6	10	100	0	52	53	0	19	26	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36684979--36685047	6	11.5	6	85	11	97	36	30	0	33	1.58
36688211--36688641	125	3.5	124	92	0	691	31	18	20	29	1.96
36691800--36691842	21	2.0	21	95	0	77	16	0	37	46	1.47
36691862--36691902	7	6.0	7	78	16	50	51	0	0	48	1.00
36691862--36691903	8	5.0	8	81	18	50	50	0	0	50	1.00
36693036--36693061	7	3.7	7	100	0	52	57	15	0	26	1.38
36693230--36693267	20	1.9	20	89	10	60	55	5	2	36	1.37
36693177--36693568	198	2.0	196	89	2	606	35	15	17	31	1.91
36694446--36694504	22	2.7	22	81	5	66	47	5	25	22	1.71
36698020--36698064	21	2.1	21	83	4	54	53	8	17	20	1.70
36698992--36699022	14	2.2	14	94	0	53	16	58	9	16	1.63
36701618--36701656	20	2.0	20	94	0	69	48	0	2	48	1.15
36701755--36701794	20	2.0	20	90	0	62	50	12	10	27	1.72
36710894--36710948	28	2.0	28	89	7	85	58	12	7	21	1.59
36716147--36716254	30	3.6	30	92	0	153	34	23	16	25	1.95
36717418--36717469	25	2.1	25	96	0	95	40	11	11	36	1.78
36718399--36718464	13	5.1	13	81	7	80	27	4	27	40	1.75
36720417--36721244	414	2.0	413	99	0	1622	38	10	13	37	1.79
36721629--36721667	18	2.2	18	85	0	51	41	0	28	30	1.57
36722610--36722652	13	3.1	14	84	12	54	60	0	0	39	0.97
36738684--36738717	17	2.0	17	100	0	68	47	11	5	35	1.65
36743245--36743270	5	5.2	5	100	0	52	42	19	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36744490--36744526	9	4.1	9	92	0	65	29	10	13	45	1.77
36770056--36770197	41	3.5	41	88	0	194	23	19	28	28	1.98
36770587--36770620	15	2.3	15	89	0	50	14	0	44	41	1.45
36770583--36770642	7	8.4	7	80	10	50	25	0	38	36	1.56
36770775--36770904	14	9.1	14	70	10	66	22	0	28	48	1.56
36770838--36770956	7	16.7	7	70	10	53	20	1	35	42	1.62
36770838--36770904	22	3.1	22	80	4	73	19	1	29	49	1.57
36772269--36772412	43	3.3	43	86	3	200	26	18	25	29	1.98
36772294--36772426	43	3.1	43	83	2	115	30	18	20	30	1.96
36772666--36772739	22	3.4	22	86	0	103	40	25	14	18	1.89
36773453--36773526	35	2.1	35	100	0	148	35	17	5	41	1.72
36778652--36778816	43	3.9	42	73	15	142	23	18	26	32	1.97
36778704--36778785	41	2.0	42	85	2	112	26	15	24	32	1.95
36778977--36779008	16	1.9	17	93	6	57	40	0	21	37	1.54
36782009--36782059	26	2.0	26	84	0	66	23	17	29	29	1.97
36804817--36804867	14	3.6	14	76	7	50	33	7	3	54	1.47
36826609--36826637	2	15.0	2	92	7	51	0	51	0	48	1.00
36827972--36828012	3	13.7	3	100	0	82	34	0	31	34	1.58
36830168--36830254	44	2.0	43	88	6	131	55	14	8	21	1.66
36831936--36831985	10	4.7	10	88	11	73	0	14	0	86	0.58
36831936--36831983	22	2.2	21	92	3	78	0	14	0	85	0.60
36831938--36831976	7	5.4	7	87	6	60	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36834829--36834863	2	17.5	2	100	0	70	51	0	48	0	1.00
36836118--36836142	2	12.5	2	100	0	50	52	0	0	48	1.00
36837964--36838000	16	2.3	16	95	0	65	59	27	10	2	1.44
36838110--36838161	24	2.2	24	89	0	77	55	9	1	32	1.43
36841064--36841124	20	3.0	19	72	18	52	54	11	13	21	1.70
36841099--36841144	21	2.1	22	84	4	58	58	6	10	23	1.55
36842776--36842829	26	2.1	26	100	0	108	35	11	14	38	1.82
36843329--36843459	45	2.9	45	81	3	165	41	13	22	22	1.89
36843336--36843501	90	1.8	89	81	7	201	39	15	22	22	1.91
36845302--36845777	134	3.6	129	86	8	544	43	6	6	42	1.57
36845588--36845790	63	3.1	63	62	20	153	43	7	6	41	1.60
36845403--36845832	134	3.2	134	93	2	686	44	7	7	40	1.61
36846476--36846558	33	2.5	33	84	3	96	31	4	14	49	1.64
36849899--36850034	49	2.8	48	80	4	148	25	16	30	27	1.97
36856898--36857020	54	2.3	54	82	0	147	25	29	26	19	1.99
36856933--36857047	54	2.1	54	82	3	133	26	29	23	20	1.98
36857601--36857685	14	6.1	14	76	0	71	30	16	16	36	1.91
36857595--36857675	42	1.9	42	87	0	117	29	18	13	38	1.89
36857595--36857685	42	2.2	42	83	0	110	29	17	15	37	1.91
36859938--36860067	65	2.0	65	93	0	224	31	16	11	40	1.84
36860660--36860700	20	2.0	20	95	0	73	19	17	14	48	1.81
36862857--36862882	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36881647--36881716	31	2.3	31	80	5	88	42	2	8	45	1.49
36891715--36891825	25	4.4	25	73	15	86	29	19	26	24	1.99
36895514--36895594	26	3.1	26	85	0	117	32	24	23	19	1.98
36895801--36895994	27	7.3	25	83	6	147	20	14	22	42	1.88
36895802--36895994	80	2.4	77	77	10	181	20	15	21	43	1.88
36895955--36896112	83	1.9	83	86	0	226	24	20	21	33	1.97
36905755--36905801	21	2.2	21	77	7	51	31	10	0	57	1.33
36923216--36923710	153	3.3	144	81	12	556	29	11	8	50	1.67
36923288--36923710	153	2.8	153	87	4	624	30	10	8	50	1.67
36926142--36926195	23	2.3	24	81	12	67	48	1	1	48	1.23
36926493--36926518	2	13.0	2	100	0	52	50	0	0	50	1.00
36930540--36930570	13	2.4	13	88	0	53	54	0	16	29	1.42
36937366--36937390	7	3.6	7	100	0	50	44	12	0	44	1.41
36938518--36938557	19	2.0	20	85	4	55	47	0	0	52	1.00
36944618--36944690	36	2.0	36	89	0	110	38	9	23	28	1.86
36947215--36947559	51	6.8	50	76	7	295	31	24	15	29	1.95
36947216--36947559	102	3.4	100	84	4	386	31	24	15	29	1.95
36951527--36951573	24	2.0	24	83	8	60	48	0	34	17	1.47
36957684--36957727	21	2.1	21	100	0	88	36	13	9	40	1.76
36962058--36962821	92	8.3	92	92	0	1242	42	16	6	33	1.75
36965681--36965810	43	3.0	43	82	6	156	21	18	29	30	1.97
36974330--36974363	16	2.1	16	94	0	59	32	2	17	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36977469--36977500	13	2.5	13	100	0	64	53	0	0	46	1.00
36978108--36978152	24	1.9	23	86	4	63	17	13	8	60	1.58
36978874--36979067	96	2.0	97	98	1	381	24	14	17	43	1.86
36984940--36984970	4	7.5	4	96	3	53	25	45	3	25	1.69
36985108--36985148	3	13.7	3	94	0	55	0	60	0	39	0.96
36987746--36987774	2	14.5	2	100	0	58	51	0	0	48	1.00
36992162--36992195	16	2.1	16	88	0	50	29	0	20	50	1.49
36993523--36993568	3	16.3	3	79	20	55	0	26	0	73	0.83
36993523--36993578	5	11.2	5	87	12	64	0	21	0	78	0.75
36993523--36993580	21	2.7	22	84	10	68	0	20	0	79	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131