genome.fa.s9.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  104  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34488100--34488267	1	168.0	1	98	0	327	0	0	99	0	0.05
34496764--34496818	21	2.6	21	85	0	65	12	32	32	21	1.91
34496827--34496871	19	2.3	20	81	11	58	24	35	22	17	1.95
34496836--34496879	19	2.3	19	88	0	61	22	36	27	13	1.92
34500718--34500811	30	3.1	30	83	7	118	41	7	24	26	1.81
34505223--34505307	30	2.8	30	98	0	161	43	7	24	24	1.79
34505222--34505302	15	5.3	16	71	11	80	44	6	24	24	1.76
34525662--34525712	23	2.2	23	82	6	59	11	23	27	37	1.90
34530467--34530514	18	2.5	19	76	10	53	56	0	2	41	1.11
34532944--34532998	18	3.1	18	77	12	60	72	1	0	25	0.94
34532951--34533007	17	3.3	18	76	14	66	71	1	1	24	1.04
34532953--34532999	8	5.8	8	78	11	51	74	2	0	23	0.93
34533961--34534016	28	2.2	24	81	12	58	58	3	1	35	1.26
34534241--34534328	36	2.6	34	81	15	110	43	0	0	56	0.99
34534241--34534357	32	3.5	33	77	17	125	43	0	0	54	1.12
34535656--34535700	21	2.1	21	83	0	54	28	22	2	46	1.63
34537372--34537418	24	1.9	25	82	4	60	4	19	2	74	1.09
34547792--34547831	17	2.4	17	83	8	55	67	0	0	32	0.91
34553531--34553576	24	1.9	24	86	8	67	47	4	8	39	1.54
34553542--34553593	24	2.2	24	82	0	59	50	5	5	38	1.51
34555324--34555378	22	2.4	23	84	3	67	65	0	3	30	1.10
34555335--34555386	23	2.2	24	89	3	79	57	0	7	34	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34555496--34555522	14	1.9	14	100	0	54	66	0	18	14	1.25
34555489--34555538	14	3.7	14	84	5	50	74	0	14	12	1.09
34555518--34555564	17	2.7	17	80	9	51	74	2	6	17	1.12
34556329--34556355	14	1.9	14	100	0	54	66	0	18	14	1.25
34556322--34556371	14	3.7	14	84	5	50	74	0	14	12	1.09
34556351--34556397	17	2.7	17	80	9	51	74	2	6	17	1.12
34555460--34557126	833	2.0	833	100	0	3334	39	20	19	20	1.93
34559124--34559351	43	5.3	43	84	1	289	26	32	16	23	1.96
34559124--34559371	85	2.9	85	84	3	336	28	32	16	22	1.95
34559144--34559384	127	1.9	127	82	1	304	31	31	14	21	1.94
34563907--34563950	22	2.0	22	82	4	54	20	2	52	25	1.58
34564064--34564294	115	2.0	118	91	2	378	32	10	15	41	1.81
34565562--34565751	41	4.6	40	81	3	191	30	30	18	20	1.97
34568868--34568902	18	1.9	18	88	0	52	11	22	28	37	1.89
34579387--34579460	29	2.5	29	82	4	85	25	14	13	45	1.82
34579931--34579970	16	2.5	16	91	0	62	47	2	7	42	1.45
34579903--34579955	22	2.4	22	87	0	70	52	1	1	43	1.23
34580094--34580139	24	1.9	24	91	8	76	60	2	0	36	1.09
34583177--34583217	20	2.0	20	86	9	57	39	0	2	58	1.11
34583220--34583275	19	3.0	19	85	10	71	48	0	7	44	1.30
34583225--34583286	20	3.2	20	82	11	76	45	0	8	46	1.32
34583455--34583503	22	2.2	22	100	0	98	4	8	18	69	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34592417--34592448	15	2.2	15	94	5	57	43	9	18	28	1.81
34592689--34592731	16	2.4	18	85	11	54	72	2	2	23	1.08
34593235--34593288	27	2.0	27	81	0	63	35	27	1	35	1.68
34596241--34596411	87	2.0	87	83	6	222	40	21	14	24	1.90
34602074--34602128	20	2.7	20	89	10	85	34	12	12	40	1.82
34602093--34602173	38	2.1	38	84	4	101	40	9	7	41	1.66
34602177--34602251	36	2.1	37	87	7	109	48	13	13	25	1.79
34602185--34602258	19	3.9	21	70	24	65	41	12	12	33	1.79
34602386--34602413	5	5.6	5	100	0	56	64	0	0	35	0.94
34602588--34602633	18	2.6	18	82	0	65	0	17	0	82	0.67
34602947--34602998	3	15.7	3	84	15	59	0	36	0	63	0.95
34602947--34602998	10	5.5	10	74	21	58	0	36	0	63	0.95
34602955--34602998	16	2.6	17	89	7	63	0	36	0	63	0.95
34603323--34603491	30	5.7	30	80	2	171	37	5	23	32	1.79
34603999--34604694	347	2.0	349	98	1	1362	46	12	18	22	1.82
34608648--34608673	7	3.7	7	100	0	52	15	0	0	84	0.62
34609494--34609552	15	3.9	15	76	8	66	52	3	10	33	1.52
34610783--34611039	84	3.0	85	84	5	331	47	8	13	30	1.72
34614943--34615009	25	2.7	25	83	4	82	28	28	14	28	1.96
34617825--34617888	23	2.7	24	76	7	69	42	18	10	28	1.84
34624701--34624790	42	2.1	43	89	2	137	45	13	8	32	1.74
34631456--34631529	38	1.9	38	86	5	105	40	18	9	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34638962--34639015	27	2.0	27	81	0	63	35	27	1	35	1.68
34642343--34642396	18	3.0	18	80	0	63	57	1	14	25	1.48
34643277--34643326	7	6.9	7	81	6	55	48	34	0	18	1.48
34643277--34643326	15	3.4	14	81	8	55	48	34	0	18	1.48
34646227--34646266	18	2.2	18	86	8	55	65	2	2	30	1.19
34646235--34646271	17	2.1	19	90	10	60	64	0	2	32	1.07
34646249--34646325	36	2.1	37	83	7	95	53	2	9	35	1.47
34646859--34646912	3	17.7	3	84	3	72	61	0	5	33	1.19
34646859--34646912	15	3.5	15	92	7	83	61	0	5	33	1.19
34648061--34648120	18	3.3	19	81	9	63	66	0	6	26	1.16
34648079--34648120	9	4.7	9	82	11	50	71	0	2	26	0.98
34648091--34648132	20	2.0	21	86	4	59	69	0	2	28	1.01
34648129--34648544	208	2.0	207	98	0	805	47	12	19	19	1.81
34649920--34650455	50	10.7	50	67	3	279	27	23	19	30	1.98
34649795--34650455	100	6.7	100	85	2	811	27	23	19	28	1.99
34651637--34651676	17	2.4	16	84	12	53	2	2	7	87	0.71
34651646--34651678	12	2.6	13	90	9	59	0	0	12	87	0.53
34653643--34653686	19	2.3	20	84	7	56	40	11	20	27	1.86
34669940--34670747	198	4.1	198	93	0	1305	32	21	20	25	1.97
34669790--34670747	100	9.6	99	85	5	1118	32	21	20	25	1.97
34669790--34670725	50	18.9	50	75	6	837	32	22	20	25	1.98
34676351--34676394	12	3.7	12	96	0	79	43	15	13	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34677523--34677614	7	10.4	9	75	16	54	35	0	1	63	1.02
34677574--34677621	17	2.6	18	74	12	53	41	0	0	58	0.98
34682650--34682739	42	2.1	43	89	2	137	45	13	8	32	1.74
34702508--34702533	6	4.3	6	100	0	52	50	0	30	19	1.48
34708239--34708305	31	2.1	32	88	2	100	35	7	17	38	1.78
34711128--34711156	15	1.9	15	100	0	58	68	17	6	6	1.34
34711182--34711233	27	1.9	27	100	0	104	30	23	34	11	1.90
34712926--34712978	26	2.0	27	92	3	90	16	28	22	32	1.96
34712929--34712987	26	2.2	26	85	8	75	16	30	22	30	1.96
34713056--34713105	25	1.9	27	84	8	68	58	4	4	34	1.36
34713457--34713495	20	2.0	19	85	5	51	30	0	5	64	1.15
34721962--34721999	19	1.9	19	89	5	58	52	2	5	39	1.38
34727058--34727082	11	2.3	11	100	0	50	60	0	24	16	1.36
34731601--34731625	12	2.1	12	100	0	50	8	44	0	48	1.32
34733158--34733235	28	2.8	28	74	14	72	71	8	1	17	1.18
34733257--34733319	27	2.3	27	83	5	83	20	30	30	19	1.97
34733840--34733902	27	2.3	27	86	5	83	20	31	28	19	1.97
34734089--34734121	13	2.6	13	90	4	50	45	0	6	48	1.27
34736994--34737581	293	2.0	294	99	0	1169	41	14	9	34	1.79
34740598--34740749	36	3.6	43	78	17	169	33	14	23	28	1.94
34740598--34740749	82	1.9	79	89	4	232	33	14	23	28	1.94
34748131--34748165	17	2.1	17	94	0	61	45	14	17	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34751741--34751778	19	2.0	19	89	0	58	26	0	5	68	1.11
34758810--34758867	30	1.9	30	100	0	116	48	10	6	34	1.64
34761206--34761505	97	3.1	97	61	15	233	40	10	10	39	1.73
34761211--34761501	94	3.1	94	60	19	213	40	9	10	38	1.73
34761196--34761578	191	2.0	191	100	0	766	40	9	10	38	1.74
34764244--34764298	3	18.0	3	77	20	53	65	1	1	30	1.13
34774034--34774064	3	10.3	3	100	0	62	32	0	0	67	0.91
34782491--34782523	14	2.4	14	90	10	50	39	0	0	60	0.97
34788436--34788470	3	11.7	3	100	0	70	34	31	34	0	1.58
34792135--34792172	20	1.9	19	89	5	58	55	2	0	42	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131