genome.fa.s9.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  45  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14643601--14643706	27	3.9	27	78	7	99	33	10	16	38	1.83
14643602--14643738	27	5.1	27	77	3	89	33	10	18	37	1.86
14645771--14645804	16	2.2	15	89	5	50	44	0	0	55	0.99
14653675--14653780	27	3.9	27	78	7	99	33	10	16	38	1.83
14653676--14653812	27	5.1	27	77	3	89	33	10	18	37	1.86
14655854--14655887	16	2.2	15	89	5	50	44	0	0	55	0.99
14659405--14659485	40	2.0	40	100	0	162	34	0	4	60	1.18
14659408--14659487	22	3.8	22	74	14	87	35	0	3	61	1.14
14660920--14660950	5	6.0	5	96	3	53	19	0	0	80	0.71
14691587--14691625	17	2.5	15	84	12	51	69	25	0	5	1.09
14698938--14698981	17	2.6	17	92	0	70	43	6	2	47	1.42
14700043--14700131	45	2.0	45	95	0	160	42	13	2	41	1.56
14702182--14702218	19	1.9	19	88	0	56	35	5	8	51	1.55
14703098--14703128	16	1.9	16	93	0	53	48	0	3	48	1.17
14703148--14703181	3	11.7	3	87	6	52	64	0	0	35	0.94
14704427--14704461	16	2.2	16	90	10	54	31	14	2	51	1.57
14717968--14718158	51	3.8	50	76	4	204	32	27	16	23	1.96
14722138--14722187	23	2.2	23	82	3	57	18	20	22	40	1.92
14725649--14725691	20	2.2	20	95	0	77	20	23	30	25	1.99
14734083--14734263	40	4.5	40	79	2	184	35	16	28	19	1.93
14734106--14734265	80	2.0	80	88	0	239	36	16	27	20	1.93
14734106--14734265	40	4.0	40	80	0	185	36	16	27	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14740369--14740609	33	6.7	33	69	18	126	22	19	26	31	1.98
14740365--14740571	76	2.8	74	85	4	274	23	17	27	31	1.97
14746656--14746703	5	9.0	5	78	13	51	75	0	4	20	0.97
14746650--14746702	28	1.9	28	88	3	81	73	0	5	20	1.03
14746649--14746704	11	5.3	11	85	8	64	75	0	5	19	1.00
14754947--14755064	20	5.9	19	74	11	94	39	21	26	12	1.89
14754935--14755062	40	3.2	40	88	0	184	41	20	26	11	1.86
14760584--14760632	15	3.2	16	81	13	52	71	4	10	14	1.27
14762619--14762788	84	2.0	85	94	1	297	25	11	21	41	1.87
14765976--14766010	10	3.6	10	84	7	54	74	0	5	20	1.02
14765977--14766018	20	2.2	19	91	4	66	73	0	4	21	1.01
14765977--14766020	19	2.4	19	88	3	63	70	0	4	25	1.06
14766363--14766419	29	2.0	29	86	6	80	61	7	5	26	1.43
14769659--14769826	50	3.4	50	82	4	178	29	20	27	21	1.98
14770097--14770135	12	3.2	12	85	0	51	51	5	23	20	1.67
14776808--14776924	51	2.3	51	83	2	137	23	17	27	30	1.97
14776930--14777028	46	2.2	43	79	12	101	24	18	23	34	1.96
14784293--14784436	39	3.4	40	72	22	132	34	9	1	54	1.42
14784324--14784457	39	3.0	47	70	22	149	33	12	2	51	1.52
14784278--14784457	89	2.0	90	95	3	328	33	12	2	51	1.52
14813732--14813881	41	3.7	41	82	0	174	32	25	22	19	1.97
14819536--14819607	25	2.9	25	81	8	76	26	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14825168--14825198	16	1.9	16	93	0	53	9	9	9	70	1.33
14826355--14826387	16	2.1	16	100	0	66	63	0	6	30	1.18
14836633--14836661	12	2.3	13	94	5	51	34	10	0	55	1.34
14838617--14838672	23	2.6	21	81	13	60	60	0	1	37	1.07
14838625--14838672	22	2.2	21	88	7	69	62	0	2	35	1.07
14869361--14869469	40	2.7	40	88	0	164	30	18	31	20	1.96
14875955--14876109	40	3.9	39	84	1	166	32	16	29	21	1.95
14875958--14876109	80	1.9	80	86	0	214	32	15	29	21	1.95
14876036--14876095	20	3.0	20	73	7	68	33	15	30	21	1.94
14879939--14880087	56	2.7	56	91	0	235	24	17	28	28	1.97
14879987--14880187	50	3.9	50	82	3	222	24	21	30	23	1.99
14882846--14882888	7	6.1	7	100	0	86	72	0	27	0	0.85
14882848--14882895	21	2.3	21	92	0	78	70	2	25	2	1.09
14889618--14889652	15	2.2	16	90	5	54	54	0	22	22	1.45
14890937--14890969	17	1.9	17	100	0	66	18	30	39	12	1.87
14897215--14897254	17	2.4	17	87	4	55	52	12	15	20	1.74
14899541--14899580	15	2.6	15	88	4	53	52	5	2	40	1.37
14916196--14916233	19	2.0	19	100	0	76	42	31	5	21	1.75
14920485--14920512	8	3.5	8	100	0	56	25	0	0	75	0.81
14926623--14926647	8	3.1	8	100	0	50	24	0	0	76	0.80
14929091--14929115	13	1.9	13	100	0	50	56	8	0	36	1.29
14930486--14930510	12	2.1	12	100	0	50	8	24	40	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14933060--14933094	15	2.3	15	85	0	52	11	20	11	57	1.64
14946127--14946163	15	2.5	15	90	0	56	51	35	10	2	1.51
14948021--14948243	27	8.2	26	78	5	176	35	18	19	26	1.95
14948021--14948230	54	3.9	54	78	8	237	34	19	19	26	1.95
14948021--14948295	82	3.4	81	76	6	227	35	18	19	26	1.95
14948316--14948364	24	2.0	24	96	0	89	20	6	28	44	1.75
14948442--14948512	27	2.7	26	79	12	74	16	23	23	35	1.95
14948494--14948547	26	2.1	26	85	0	72	18	20	24	37	1.94
14948547--14948687	32	4.4	32	79	4	151	18	20	23	37	1.94
14948553--14948672	64	1.9	64	92	0	204	18	20	24	36	1.95
14948680--14948743	22	2.9	21	75	13	67	17	18	17	46	1.84
14949402--14949443	18	2.4	18	88	4	59	45	0	14	40	1.45
14951698--14952056	27	13.4	27	81	0	362	33	18	22	26	1.96
14952255--14952304	26	1.9	26	91	0	82	14	20	28	38	1.91
14952261--14952316	26	2.2	26	83	0	67	14	19	30	35	1.91
14952371--14952419	22	2.2	22	78	7	55	16	12	18	53	1.73
14955248--14955323	23	3.2	22	66	16	62	42	9	0	48	1.35
14955202--14955331	49	2.7	48	85	7	174	40	9	0	50	1.40
14955281--14955553	94	2.9	94	96	0	492	36	11	4	47	1.58
14959816--14959879	25	2.5	25	78	16	69	31	17	4	46	1.68
14964317--14964852	266	2.0	266	95	0	955	21	19	23	35	1.96
14969133--14969298	27	6.1	27	82	8	155	40	15	16	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14969133--14969298	54	3.1	53	83	6	201	40	15	16	27	1.88
14969133--14969298	81	2.0	81	84	6	212	40	15	16	27	1.88
14986680--14986736	30	1.9	30	85	0	78	19	31	29	19	1.96
14987498--14987572	31	2.4	31	93	6	125	41	14	2	41	1.60
14990685--14990918	29	8.1	29	86	2	303	24	25	12	37	1.91
14990685--14990918	58	4.1	58	88	1	337	24	25	12	37	1.91
14990683--14990918	87	2.7	87	85	2	334	25	25	12	36	1.91
14996455--14996505	21	2.4	22	83	6	61	7	21	1	68	1.25
14999550--14999606	29	1.9	30	92	3	98	28	24	8	38	1.85
14999548--14999613	29	2.2	29	86	2	96	25	22	13	37	1.91
14999688--14999754	30	2.2	30	94	0	116	22	22	16	38	1.92
14999470--14999888	141	3.0	141	96	0	741	27	23	15	34	1.94
14999822--14999911	30	3.0	30	90	0	135	27	24	8	38	1.85
15004743--15004788	20	2.3	20	79	17	60	13	23	6	56	1.60
15007716--15007822	25	4.3	24	80	10	117	26	20	22	30	1.98
15007755--15007843	25	3.4	26	86	9	112	29	20	22	28	1.98
15007716--15007843	50	2.5	50	83	9	145	28	20	21	28	1.98
15007938--15009713	888	2.0	888	100	0	3552	35	19	10	35	1.85
15024520--15024709	41	4.6	41	79	11	192	36	16	25	21	1.93
15024547--15024707	82	2.0	82	87	2	234	35	16	27	21	1.94
15032628--15032665	19	1.9	20	89	10	60	39	5	7	47	1.55
15035558--15036506	489	1.9	489	98	0	1835	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15058440--15058490	23	2.2	23	96	0	93	19	41	23	15	1.90
15059764--15059796	14	2.3	15	89	5	50	36	0	21	42	1.53
15067464--15067490	14	1.9	14	100	0	54	18	7	7	66	1.40
15071935--15071974	19	2.1	19	85	0	53	60	5	5	30	1.40
15075930--15075954	13	1.9	13	100	0	50	48	20	8	24	1.76
15076143--15076268	41	3.1	41	86	4	139	28	23	19	28	1.98
15077749--15077815	27	2.4	27	78	9	73	52	2	0	44	1.16
15078727--15078765	14	2.8	14	92	0	69	43	5	23	28	1.75
15080750--15080803	27	2.0	27	92	3	92	24	7	16	51	1.69
15083755--15083798	17	2.6	16	82	7	52	47	6	6	38	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131