genome.fa.s9.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  111  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36998130--36998155	11	2.4	11	100	0	52	76	0	0	23	0.78
36998168--36998208	19	2.2	19	86	0	55	56	4	4	34	1.42
37001314--37001339	12	2.2	12	100	0	52	7	15	30	46	1.74
37002247--37002295	17	2.9	17	85	8	57	32	0	26	40	1.56
37002569--37002606	14	2.7	15	88	12	62	26	0	31	42	1.56
37002576--37002672	21	4.6	21	76	3	70	24	1	40	34	1.62
37002625--37002664	20	2.0	20	85	0	53	25	2	45	27	1.66
37008011--37008040	15	2.0	15	93	0	51	50	0	33	16	1.46
37008260--37008315	23	2.4	24	79	8	62	41	1	3	53	1.29
37008380--37008533	43	3.6	43	84	4	193	25	18	28	27	1.98
37008665--37008760	35	2.7	36	79	9	115	22	18	23	34	1.96
37011523--37011578	27	2.1	27	100	0	112	35	3	7	53	1.46
37021035--37021096	23	2.6	24	78	12	65	22	16	16	45	1.85
37035650--37035679	7	4.3	7	91	0	51	0	36	13	50	1.42
37046673--37046709	17	2.3	17	86	9	51	48	27	0	24	1.51
37067840--37067982	71	2.0	72	98	1	279	35	11	5	47	1.63
37069329--37069754	109	3.9	109	90	2	644	33	18	17	31	1.94
37071902--37072368	50	9.4	49	70	3	272	25	20	22	30	1.98
37071905--37072369	99	4.7	99	86	1	588	25	21	22	30	1.99
37073094--37073153	24	2.6	22	80	17	68	1	20	0	78	0.84
37073086--37073142	17	3.2	17	78	7	60	1	21	0	77	0.86
37076844--37077271	109	3.9	107	86	4	567	34	16	16	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077435--37077467	4	8.2	4	100	0	66	75	0	0	24	0.80
37080211--37080296	42	2.0	42	91	4	138	25	0	27	46	1.53
37080226--37080296	21	3.4	21	64	0	61	26	0	26	46	1.53
37080341--37080448	33	3.2	33	84	2	135	38	0	12	47	1.49
37080508--37080776	126	2.2	123	81	9	305	37	17	14	31	1.89
37083559--37083614	25	2.3	24	82	11	69	51	3	0	44	1.18
37085693--37085761	30	2.3	30	94	0	120	37	0	27	34	1.57
37100749--37101161	44	9.5	44	70	16	170	28	20	23	27	1.99
37110183--37110228	23	2.0	23	100	0	92	39	8	13	39	1.75
37115725--37115769	23	2.0	23	86	4	65	37	6	17	37	1.76
37115953--37115997	23	2.0	23	81	0	54	22	0	15	62	1.33
37121261--37121293	14	2.3	15	89	5	50	30	12	30	27	1.92
37130203--37130229	5	5.4	5	100	0	54	81	18	0	0	0.69
37138272--37138408	21	6.5	21	69	3	96	16	21	17	43	1.87
37138254--37138410	42	3.7	42	82	3	172	17	23	15	43	1.87
37139775--37139808	17	2.0	17	100	0	68	11	29	23	35	1.90
37151867--37151906	14	2.9	14	84	0	53	32	7	17	42	1.77
37151890--37151929	20	2.0	20	90	0	62	27	10	12	50	1.72
37151875--37151941	34	1.9	35	90	3	109	31	8	13	46	1.74
37151869--37151945	14	5.0	15	71	20	52	32	9	15	42	1.78
37155036--37155076	21	1.9	22	85	5	57	36	21	12	29	1.90
37156492--37156644	71	2.2	70	83	7	193	28	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37157956--37158057	39	2.6	39	89	3	143	28	29	24	17	1.97
37160573--37160762	98	1.9	98	92	2	319	36	23	11	28	1.89
37161408--37161432	12	2.1	12	100	0	50	76	0	0	24	0.80
37162226--37162258	14	2.4	14	100	0	66	18	18	30	33	1.94
37166221--37166405	101	1.8	101	87	5	275	26	17	25	29	1.98
37177548--37177581	17	1.9	18	88	5	52	50	0	0	50	1.00
37177746--37177803	28	2.1	28	87	6	82	22	1	25	50	1.59
37180361--37180527	41	4.1	41	100	0	334	34	21	7	35	1.82
37183939--37183965	14	1.9	14	100	0	54	74	0	0	25	0.83
37184126--37184322	100	2.0	100	93	0	340	27	9	3	58	1.46
37184252--37184414	71	2.3	72	93	4	285	28	11	5	54	1.58
37187366--37187530	43	3.9	43	79	2	190	30	24	15	29	1.96
37187356--37187528	85	2.0	84	85	1	229	31	23	15	29	1.95
37188834--37188887	19	2.8	19	76	18	58	48	3	3	44	1.38
37188823--37188885	20	3.3	19	80	6	65	53	4	3	38	1.38
37197376--37197408	3	10.7	3	93	6	57	0	33	0	66	0.92
37198143--37198233	27	3.4	27	83	3	121	18	21	20	38	1.93
37199632--37199698	27	2.5	27	75	0	71	20	31	20	26	1.98
37199648--37199706	27	2.2	27	81	0	64	20	33	20	25	1.97
37201002--37201082	41	2.0	41	100	0	162	20	22	27	29	1.99
37217705--37217743	6	6.5	6	87	0	60	23	33	15	28	1.95
37217705--37217743	18	2.2	18	100	0	78	23	33	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217814--37217867	5	10.2	5	97	2	81	0	18	0	81	0.69
37220999--37221029	7	4.4	7	100	0	62	45	12	0	41	1.42
37223686--37223741	13	4.3	13	82	10	62	42	5	0	51	1.24
37225099--37225439	41	8.3	41	92	3	562	22	29	21	26	1.99
37225099--37225439	82	4.2	82	98	0	646	22	29	21	26	1.99
37248116--37248156	7	6.1	7	81	18	52	39	0	0	60	0.96
37248117--37248156	19	2.1	19	95	4	71	40	0	0	60	0.97
37248765--37248798	17	1.9	18	88	5	52	41	0	23	35	1.55
37249257--37249302	21	2.2	21	84	7	58	23	26	21	28	1.99
37251002--37251048	20	2.3	21	81	3	60	44	17	2	36	1.60
37251483--37251580	41	2.3	43	91	5	155	47	23	8	20	1.76
37254633--37254754	43	2.8	43	77	13	133	31	28	18	21	1.96
37259755--37259898	71	2.0	72	95	1	263	46	15	4	33	1.66
37260395--37260618	32	7.0	32	80	3	227	38	20	19	20	1.94
37260411--37260618	64	3.2	64	81	6	251	38	22	18	20	1.93
37260411--37260618	96	2.2	96	81	5	258	38	22	18	20	1.93
37265043--37265119	14	5.0	15	71	20	52	42	14	9	33	1.77
37265059--37265098	20	2.0	20	90	0	62	50	12	10	27	1.72
37265047--37265113	34	1.9	35	90	3	109	46	13	8	31	1.74
37269247--37269287	20	2.0	20	100	0	82	34	9	24	31	1.88
37271902--37272045	72	2.0	72	97	0	270	22	22	13	40	1.89
37277139--37277170	11	2.9	11	95	0	55	34	3	9	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37301971--37302093	61	2.0	61	93	0	210	20	23	34	21	1.96
37307116--37307258	61	2.3	61	92	0	241	23	21	32	21	1.98
37307286--37307425	42	3.4	41	78	8	124	22	21	37	18	1.94
37316254--37316578	27	12.2	27	83	2	381	19	18	20	40	1.91
37317675--37317894	27	8.1	27	78	6	196	17	16	22	43	1.88
37317674--37317894	54	4.1	54	84	2	266	17	16	22	42	1.88
37317672--37317894	81	2.8	81	86	2	297	17	17	22	42	1.89
37321854--37321984	66	2.0	66	83	3	165	42	18	25	12	1.86
37322276--37322524	43	5.8	43	79	7	195	32	22	18	27	1.97
37322278--37322529	86	2.9	83	79	8	231	31	21	18	28	1.97
37322405--37322567	43	3.8	43	83	1	166	32	18	21	27	1.97
37322405--37322567	86	1.9	86	85	0	227	32	18	21	27	1.97
37328267--37328306	15	2.5	17	76	19	50	5	27	0	67	1.11
37332626--37332768	45	3.2	44	76	7	144	24	24	20	30	1.98
37337633--37337669	17	2.1	18	85	14	51	43	2	0	54	1.14
37338206--37338254	27	1.9	24	84	12	62	36	18	2	42	1.62
37340093--37340127	16	2.2	16	94	0	61	37	5	31	25	1.80
37347931--37348062	37	3.5	35	82	9	120	36	31	15	17	1.91
37348005--37348090	37	2.3	37	86	4	111	43	27	13	15	1.85
37357608--37357658	24	2.1	25	89	7	79	39	0	1	58	1.09
37357613--37357666	24	2.2	24	83	9	65	37	0	3	59	1.15
37360656--37361033	195	1.9	196	88	2	564	35	16	8	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37361633--37361763	63	2.1	62	92	4	221	51	15	9	23	1.71
37368826--37368922	31	3.3	31	70	24	91	18	11	19	50	1.77
37372598--37372690	44	2.1	44	96	2	170	30	9	11	48	1.72
37386028--37386596	69	8.2	69	76	1	370	34	24	20	20	1.97
37386032--37386596	138	4.1	138	76	3	431	34	24	20	20	1.96
37394491--37394517	3	9.0	3	100	0	54	66	0	0	33	0.92
37395080--37395105	3	8.7	3	100	0	52	30	0	0	69	0.89
37395641--37395670	2	15.0	2	100	0	60	0	50	0	50	1.00
37396641--37396712	36	2.0	36	100	0	144	27	0	27	44	1.55
37403686--37403746	25	2.4	25	78	7	61	21	8	26	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131