genome.fa.s9.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  88  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29400476--29400551	25	2.9	25	82	7	80	40	17	19	22	1.91
29400434--29400581	54	2.7	54	82	6	163	39	20	17	21	1.92
29400599--29400693	29	3.4	28	77	9	88	33	24	15	26	1.95
29413835--29413868	18	1.9	17	88	5	50	17	5	2	73	1.16
29418199--29418262	19	3.3	19	78	4	74	31	6	14	48	1.68
29418211--29418273	19	3.3	19	75	4	63	25	7	15	50	1.71
29422535--29422630	47	2.0	48	97	2	185	22	11	18	46	1.81
29425950--29425997	14	3.4	14	100	0	96	35	8	20	35	1.83
29432767--29432807	13	3.2	13	75	25	50	0	31	21	46	1.52
29436807--29436847	11	3.7	11	90	6	57	60	0	39	0	0.96
29436921--29436955	17	2.1	16	89	5	52	17	0	11	71	1.14
29439338--29439376	19	2.1	19	95	0	69	25	17	38	17	1.92
29440702--29440730	14	2.0	15	93	6	51	27	0	20	51	1.47
29440922--29440978	28	2.0	28	90	6	89	56	0	5	38	1.22
29441880--29441995	43	2.7	42	80	10	144	25	22	27	24	2.00
29444356--29444424	32	2.2	32	86	0	102	24	23	15	36	1.94
29444469--29444524	29	1.9	29	81	0	67	30	12	8	48	1.72
29445921--29445945	11	2.3	11	100	0	50	68	8	8	16	1.38
29445976--29446033	17	3.5	17	68	13	57	53	5	3	37	1.40
29446293--29446674	101	3.6	103	80	13	450	57	14	1	26	1.46
29446404--29446674	119	2.4	114	79	12	305	57	14	1	27	1.45
29446754--29446791	17	2.2	17	95	0	67	44	18	0	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29446837--29446887	20	2.4	22	80	9	61	0	33	0	66	0.92
29447541--29447579	21	1.9	21	84	5	53	64	5	2	28	1.28
29451411--29451504	24	3.9	24	72	9	66	35	21	26	17	1.95
29451410--29451490	25	3.3	25	71	8	67	35	22	25	16	1.94
29451414--29451557	48	2.9	49	76	15	120	35	19	26	18	1.95
29451519--29451586	25	2.7	25	79	4	75	30	19	29	20	1.97
29451626--29451732	25	4.4	24	76	6	81	32	20	28	17	1.96
29451670--29451732	25	2.6	24	87	2	90	33	19	28	19	1.96
29453641--29453716	30	2.6	30	77	10	86	23	27	17	31	1.97
29464158--29464251	24	3.9	24	72	9	66	35	21	26	17	1.95
29464157--29464237	25	3.3	25	71	8	67	35	22	25	16	1.94
29464161--29464304	48	2.9	49	76	15	120	35	19	26	18	1.95
29464266--29464333	25	2.7	25	79	4	75	30	19	29	20	1.97
29464373--29464479	25	4.4	24	76	6	81	32	20	28	17	1.96
29464417--29464479	25	2.6	24	87	2	90	33	19	28	19	1.96
29466388--29466463	30	2.6	30	77	10	86	23	27	17	31	1.97
29474580--29474692	46	2.5	46	97	0	208	30	27	21	20	1.98
29474580--29474693	23	5.0	23	91	2	176	31	27	21	20	1.98
29479506--29479796	141	2.0	143	92	1	478	36	13	23	27	1.91
29485190--29485240	18	2.9	17	75	16	59	37	5	0	56	1.23
29485169--29485227	18	3.0	20	79	18	61	42	1	3	52	1.28
29485191--29485240	17	2.8	18	81	6	66	38	6	0	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29490478--29490527	24	2.1	24	88	0	73	32	30	14	24	1.94
29491168--29491230	31	2.0	31	96	0	117	31	19	6	42	1.76
29492446--29492492	24	1.9	24	83	12	60	55	2	0	42	1.12
29513490--29513601	44	2.6	43	88	2	161	30	20	20	28	1.98
29515336--29515384	26	2.0	24	88	8	71	24	4	4	67	1.26
29522234--29522455	42	5.3	42	88	2	293	25	31	19	22	1.98
29522511--29522577	35	1.9	35	81	6	82	55	2	2	38	1.31
29527882--29528079	14	13.9	14	72	12	134	47	32	1	18	1.56
29527881--29528079	7	27.9	7	69	11	75	47	33	1	18	1.56
29527972--29528013	22	2.0	21	90	4	66	50	33	0	16	1.46
29528082--29528281	66	3.0	66	98	0	382	41	7	5	46	1.55
29528107--29528211	33	3.2	33	62	20	83	41	8	5	43	1.59
29528401--29528556	41	3.8	41	85	4	206	28	26	23	21	1.99
29528695--29528720	12	2.2	12	100	0	52	46	30	15	7	1.74
29528885--29529024	49	2.8	50	87	1	210	20	28	22	27	1.99
29534862--29535005	50	2.9	50	84	4	200	22	29	21	26	1.99
29537216--29537257	18	2.3	18	83	4	57	45	2	4	47	1.36
29537862--29538264	201	2.0	201	100	0	806	26	26	12	33	1.92
29538982--29539008	14	1.9	14	100	0	54	29	11	7	51	1.64
29543751--29543794	22	2.0	21	83	12	54	40	0	0	59	0.98
29545288--29545335	18	2.6	18	83	6	60	50	2	4	43	1.33
29555152--29555229	24	3.2	24	66	25	65	41	5	37	16	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29562455--29562650	43	4.6	43	78	2	171	43	20	17	18	1.88
29581695--29581729	8	4.4	8	85	0	52	77	0	0	22	0.78
29588566--29588600	16	2.2	16	90	10	54	51	2	17	28	1.59
29591773--29591829	21	2.8	21	83	2	62	54	7	22	15	1.65
29593936--29594193	43	6.2	42	74	11	185	35	18	19	25	1.95
29594093--29594193	37	2.6	40	82	7	127	34	19	18	26	1.95
29599364--29599425	26	2.3	25	83	10	70	59	9	11	19	1.58
29601462--29601510	25	2.0	25	83	0	62	24	30	22	22	1.99
29601660--29601721	27	2.3	26	83	2	79	37	20	20	20	1.95
29601662--29601728	26	2.6	27	83	4	84	38	19	20	20	1.93
29601875--29602126	27	9.3	26	83	6	283	17	21	20	41	1.90
29601873--29602126	54	4.7	54	84	3	318	17	21	20	40	1.91
29601876--29602126	81	3.1	81	83	3	328	17	21	19	41	1.90
29607683--29607707	12	2.1	12	100	0	50	40	24	0	36	1.55
29609399--29609466	9	7.6	9	84	0	91	27	11	20	39	1.88
29609399--29609474	27	2.8	27	87	0	107	30	10	18	40	1.84
29609393--29609483	27	3.3	27	78	6	94	29	9	17	42	1.82
29625031--29625061	14	2.2	14	100	0	62	38	12	6	41	1.69
29636206--29636363	43	3.7	43	80	7	169	33	27	15	24	1.95
29638115--29638165	24	2.1	24	100	0	102	27	11	17	43	1.84
29646591--29646645	22	2.6	21	71	23	53	58	5	3	32	1.38
29649216--29649270	22	2.6	21	71	23	53	58	5	3	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29649997--29650127	67	2.0	67	85	0	181	41	9	17	32	1.81
29652109--29652158	24	2.1	23	85	10	66	58	0	2	40	1.10
29658472--29658536	32	2.0	32	96	0	121	32	6	23	38	1.79
29659083--29659271	41	4.6	41	83	1	236	23	29	14	32	1.94
29659125--29659192	21	3.3	21	68	12	59	22	33	16	27	1.95
29659083--29659277	82	2.4	82	87	1	266	23	28	14	33	1.94
29660482--29660626	74	2.0	74	95	0	263	24	7	17	50	1.72
29663109--29663148	17	2.4	17	86	0	53	72	5	0	22	1.04
29663230--29663301	9	8.4	8	80	17	58	66	1	2	29	1.14
29663264--29663301	3	13.0	3	88	5	60	65	0	2	31	1.06
29664917--29665583	217	3.1	214	83	5	759	26	22	20	31	1.98
29665007--29665601	44	13.5	44	82	8	543	26	21	20	31	1.98
29666482--29666532	26	2.0	26	92	0	84	54	13	15	15	1.71
29667802--29667846	23	2.0	23	86	8	65	11	2	13	73	1.19
29668929--29668971	16	2.7	16	85	7	61	25	0	23	51	1.49
29683210--29683251	21	2.0	20	82	13	50	45	14	7	33	1.72
29695532--29695588	24	2.4	24	90	0	87	31	28	17	22	1.97
29695481--29695651	87	2.0	87	92	0	288	30	26	19	22	1.98
29696683--29696729	11	4.3	11	88	0	76	12	2	57	27	1.47
29707104--29707133	15	1.9	16	93	6	53	70	6	16	6	1.31
29707772--29708092	27	11.9	27	83	2	376	41	22	17	18	1.90
29722719--29722787	23	3.0	24	87	4	90	36	20	26	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29727565--29727762	27	7.3	26	73	12	130	32	27	14	25	1.94
29727565--29727762	108	1.8	108	84	4	274	32	27	14	25	1.94
29731177--29731245	30	2.2	32	87	5	97	4	37	14	43	1.65
29731223--29731285	23	2.5	26	87	10	96	1	42	17	38	1.59
29731177--29731259	30	2.7	30	81	7	87	3	40	14	40	1.63
29731374--29731411	8	4.8	8	100	0	76	50	26	0	23	1.50
29744098--29744140	18	2.3	18	88	4	59	2	55	0	41	1.12
29745570--29745627	30	1.9	30	96	0	107	39	18	13	27	1.89
29746683--29746722	14	2.9	14	84	0	53	42	17	7	32	1.77
29774746--29774799	20	2.7	20	85	2	72	64	1	0	33	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131