genome.fa.s9.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  71  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23833432--23833881	109	4.1	109	99	0	873	52	10	11	24	1.69
23838063--23838087	5	5.0	5	100	0	50	40	0	20	40	1.52
23838599--23838663	27	2.5	27	78	7	64	21	27	20	30	1.98
23840452--23840486	15	2.2	16	90	5	54	37	8	14	40	1.76
23853262--23853356	48	2.0	48	93	0	163	43	8	28	20	1.80
23853735--23853768	10	3.5	10	88	4	52	73	0	5	20	1.04
23853783--23853824	17	2.5	17	80	7	50	23	2	0	73	0.94
23854514--23854575	14	4.2	14	76	15	54	20	6	0	72	1.06
23854533--23854571	3	12.7	3	89	5	60	30	2	0	66	1.05
23858983--23859240	45	5.7	46	81	9	277	40	17	22	20	1.91
23858980--23859240	135	1.9	135	83	9	336	40	17	21	19	1.91
23869532--23869686	10	15.3	10	72	17	90	69	0	30	0	0.89
23869531--23869718	41	4.7	40	84	7	199	68	0	30	0	0.94
23869578--23869718	31	4.6	31	65	14	69	70	0	29	0	0.93
23870049--23870491	161	2.8	151	76	13	437	51	7	9	31	1.62
23870519--23870561	21	2.0	21	95	0	77	51	2	4	41	1.35
23870657--23870703	13	3.8	12	86	5	60	63	2	2	31	1.18
23872982--23873096	57	2.0	58	98	1	223	40	6	6	45	1.58
23873459--23873528	5	14.2	5	83	8	90	35	0	1	62	1.04
23875544--23875612	24	2.7	27	82	10	83	42	0	26	31	1.56
23875756--23875851	39	2.5	39	80	6	108	20	23	28	27	1.99
23879576--23879686	39	2.7	41	77	17	113	52	12	4	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23879576--23879706	39	3.2	38	76	20	106	51	12	3	32	1.57
23879871--23879907	10	3.6	10	88	3	56	0	29	0	70	0.88
23880327--23880415	46	2.0	45	84	10	119	46	2	4	47	1.35
23880417--23880481	23	2.7	25	72	18	66	32	1	7	58	1.36
23881309--23881342	9	3.8	9	100	0	68	76	0	0	23	0.79
23883231--23883262	15	2.0	17	88	11	50	71	0	0	28	0.86
23883366--23883394	8	3.6	8	100	0	58	65	0	0	34	0.93
23883363--23883408	16	3.0	15	81	12	58	69	0	2	28	1.00
23884055--23884110	18	3.1	18	76	5	58	33	7	0	58	1.25
23884062--23884103	19	2.1	21	86	8	61	28	9	0	61	1.27
23887029--23887054	4	6.5	4	100	0	52	73	0	0	26	0.84
23889826--23889951	35	3.6	35	85	2	164	15	7	32	44	1.74
23894407--23894467	20	3.0	20	78	7	70	62	0	0	37	0.96
23897661--23897701	20	2.0	20	85	0	55	39	2	7	51	1.43
23899248--23899276	12	2.4	12	100	0	58	31	0	13	55	1.39
23902157--23902513	176	2.0	176	97	0	678	35	16	25	22	1.94
23904153--23904960	403	2.0	403	100	0	1616	32	23	16	27	1.96
23905634--23905720	43	2.0	43	90	0	138	27	20	1	50	1.55
23914506--23914724	37	5.9	37	86	3	262	28	15	15	40	1.88
23919445--23919658	100	2.1	101	85	4	288	36	11	20	31	1.89
23925119--23925288	56	3.0	57	87	5	240	45	11	12	31	1.77
23927328--23927354	14	1.9	14	100	0	54	14	25	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23932106--23932219	56	2.0	56	86	0	156	44	10	13	31	1.77
23932162--23932508	84	4.0	87	84	5	349	43	12	9	34	1.74
23932162--23932476	171	1.9	167	82	8	404	43	11	9	34	1.74
23932511--23932716	79	2.6	79	88	0	295	40	13	15	31	1.85
23934932--23934988	25	2.2	27	82	17	68	26	3	5	64	1.30
23935035--23935125	19	4.8	19	73	10	60	36	1	2	60	1.16
23935035--23935103	28	2.4	29	82	4	86	34	0	2	62	1.10
23935029--23935105	9	8.3	9	71	12	50	33	0	2	63	1.08
23935035--23935127	47	2.0	47	85	6	125	37	1	2	59	1.17
23936391--23936478	25	3.6	25	76	10	76	21	23	19	35	1.96
23938264--23938332	16	4.2	16	96	3	129	24	0	37	37	1.56
23938264--23938332	33	2.1	32	97	2	129	24	0	37	37	1.56
23938313--23938402	45	2.0	45	84	2	119	27	6	27	37	1.82
23947193--23947254	31	2.1	30	87	6	90	41	8	9	40	1.67
23947191--23947257	29	2.3	27	80	14	80	40	7	10	41	1.67
23948423--23948473	13	3.8	13	82	14	52	64	1	1	31	1.15
23949276--23949360	9	9.4	9	86	0	125	40	21	12	25	1.89
23955966--23956005	20	2.0	20	100	0	80	30	25	10	35	1.88
23957507--23957550	19	2.3	19	82	17	56	36	13	0	50	1.42
23957664--23957705	17	2.4	18	80	4	50	11	14	2	71	1.24
23959839--23960092	126	2.0	127	99	0	501	30	7	16	44	1.76
23962780--23962875	47	2.0	50	83	6	126	34	25	8	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23974064--23974107	22	2.0	22	82	8	54	52	18	6	22	1.69
23982544--23982594	20	2.5	22	75	18	56	52	1	0	45	1.12
23989230--23989441	45	4.7	46	83	6	254	19	21	15	43	1.87
23989240--23989441	90	2.2	91	86	4	284	19	21	14	44	1.86
23989229--23989484	90	2.8	89	80	5	264	19	19	16	44	1.87
23999028--23999074	20	2.3	20	82	7	60	63	2	4	29	1.25
23999430--23999455	2	13.0	2	100	0	52	50	0	0	50	1.00
24015977--24016060	43	2.0	43	100	0	168	34	23	25	16	1.95
24016019--24017899	959	2.0	936	95	3	3321	29	10	20	39	1.86
24024868--24024951	42	2.0	42	95	0	150	45	9	15	29	1.78
24040506--24040554	22	2.3	21	76	13	55	38	2	2	57	1.22
24043435--24043468	16	2.2	15	89	5	50	44	0	0	55	0.99
24044194--24044241	25	2.0	25	87	4	71	35	0	4	60	1.16
24045876--24045914	19	2.1	19	95	0	69	41	5	2	51	1.38
24046176--24046303	42	3.0	43	84	6	172	13	21	16	48	1.80
24046200--24046300	21	4.8	21	70	4	87	13	20	15	49	1.79
24047836--24047884	25	2.1	22	81	11	53	55	4	14	26	1.57
24062859--24062891	17	1.9	17	88	11	50	45	9	9	36	1.68
24072771--24072823	15	3.3	15	73	14	52	18	35	5	39	1.75
24072763--24072850	33	2.7	33	87	0	131	18	36	4	40	1.71
24076213--24076338	43	2.9	44	79	14	129	30	28	19	21	1.97
24077678--24077744	33	2.0	33	94	0	116	41	16	13	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24078540--24078580	21	2.0	21	95	0	73	36	12	4	46	1.63
24081624--24081840	90	2.4	90	80	3	215	32	16	22	28	1.95
24085936--24085976	18	2.3	18	88	12	59	43	4	9	41	1.59
24088233--24088282	20	2.5	20	83	6	66	44	8	16	32	1.76
24088468--24088509	20	2.1	19	83	16	50	26	9	16	47	1.77
24098846--24098878	17	1.9	17	93	0	57	45	0	0	54	0.99
24103532--24103598	34	1.9	35	87	3	100	31	8	14	44	1.76
24105634--24105689	22	2.5	22	85	5	69	21	17	10	50	1.77
24106458--24106486	13	2.2	13	100	0	58	31	24	6	37	1.82
24109807--24109947	40	3.6	40	75	6	144	28	16	23	31	1.96
24119055--24119225	48	3.6	47	88	6	238	40	18	14	26	1.88
24119046--24119282	95	2.5	95	78	11	263	42	18	13	25	1.87
24119045--24119272	23	9.6	25	71	17	143	43	17	13	25	1.86
24120835--24120863	11	2.5	12	88	11	51	41	6	0	51	1.28
24127256--24127317	27	2.3	28	83	8	83	24	27	9	38	1.86
24144240--24144265	3	8.7	3	100	0	52	34	30	0	34	1.58
24145395--24145421	7	3.9	7	100	0	54	44	0	0	55	0.99
24152032--24152066	3	11.7	3	100	0	70	31	0	0	68	0.90
24152210--24152707	44	11.5	43	67	15	233	28	23	19	28	1.98
24152206--24152707	217	2.3	217	93	0	844	28	23	19	28	1.98
24164810--24164851	18	2.3	18	80	19	52	57	7	2	33	1.39
24167792--24167818	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24179931--24180114	90	2.0	93	83	6	232	29	17	14	38	1.90
24180159--24180299	63	2.2	63	87	5	196	34	21	12	32	1.90
24186160--24186184	6	4.2	6	100	0	50	84	0	0	16	0.63
24187863--24187896	16	2.1	16	94	0	59	44	2	17	35	1.64
24189686--24189750	27	2.4	27	76	5	69	15	20	32	32	1.93
24196608--24196632	6	4.2	6	100	0	50	84	0	0	16	0.63
24198311--24198344	16	2.1	16	94	0	59	44	2	17	35	1.64
24200144--24200208	27	2.4	27	76	5	69	15	20	32	32	1.93
24216019--24216058	19	2.0	21	85	9	57	57	0	0	42	0.98
24221888--24221955	25	2.7	25	83	0	82	30	22	20	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131