genome.fa.s9.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  35  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11355139--11355199	32	1.9	31	83	9	79	22	6	19	50	1.70
11359001--11359058	26	2.2	26	87	0	80	32	15	12	39	1.84
11362238--11362383	72	2.0	72	97	0	274	13	19	34	32	1.90
11368641--11368670	15	2.0	15	100	0	60	33	33	6	26	1.83
11369799--11369868	31	2.3	32	80	9	83	25	7	18	48	1.73
11369961--11370171	104	2.0	106	96	2	390	35	13	7	43	1.72
11379381--11379409	13	2.2	13	100	0	58	58	0	0	41	0.98
11381806--11381839	7	4.9	7	100	0	68	41	14	0	44	1.45
11382058--11382095	20	1.9	20	88	0	58	36	21	34	7	1.82
11385277--11385305	11	2.6	11	100	0	58	17	34	10	37	1.84
11387556--11387628	28	2.6	28	84	0	92	35	17	12	34	1.88
11389117--11389154	19	2.0	19	94	0	67	26	18	5	50	1.68
11401111--11401165	22	2.5	22	87	0	74	25	27	20	27	1.99
11415876--11416017	51	2.8	51	80	2	160	26	16	26	30	1.97
11416017--11416105	45	2.0	45	93	0	151	25	17	22	33	1.96
11422274--11422320	22	2.1	22	84	0	58	19	2	42	36	1.63
11423206--11423957	138	5.5	138	91	2	1187	44	6	8	39	1.61
11423709--11423915	67	3.1	67	64	21	162	45	7	6	41	1.57
11431210--11431250	21	2.0	21	85	0	55	41	17	7	34	1.77
11436352--11436402	21	2.5	21	81	15	70	45	17	0	37	1.49
11437625--11437743	42	2.8	42	88	0	166	22	21	19	36	1.95
11441444--11441520	27	2.8	27	86	5	102	31	2	16	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11441444--11441511	9	7.4	9	80	9	84	30	2	19	47	1.64
11441443--11441520	18	4.3	18	79	8	77	30	2	16	50	1.59
11445911--11446374	114	4.1	114	96	0	822	26	22	16	34	1.95
11445913--11446374	227	2.0	228	94	0	818	26	22	16	34	1.95
11445913--11446463	227	2.4	225	87	2	613	26	21	17	35	1.95
11452172--11452222	22	2.3	22	86	0	75	31	19	21	27	1.97
11471919--11472065	31	4.8	31	75	5	122	42	17	20	19	1.89
11472041--11472111	28	2.5	28	74	0	70	38	16	25	19	1.93
11475141--11475185	23	2.0	23	100	0	90	35	0	28	35	1.58
11478411--11478450	19	2.1	19	95	0	71	27	17	17	37	1.92
11482640--11482712	33	2.2	34	85	9	98	45	16	17	20	1.86
11482640--11482732	33	2.8	32	80	6	87	44	19	18	18	1.88
11488561--11488595	16	2.2	16	89	0	52	60	2	8	28	1.41
11489222--11489334	19	5.8	19	89	4	172	35	15	10	38	1.81
11489199--11489334	40	3.4	38	86	8	164	37	14	9	38	1.79
11489222--11489333	59	1.9	59	92	0	188	35	14	10	39	1.81
11489215--11489334	40	3.2	38	87	6	172	35	15	10	39	1.80
11489903--11489974	31	2.4	30	88	4	108	43	12	9	34	1.76
11489904--11490013	31	3.6	31	80	9	93	45	12	7	34	1.70
11500064--11500128	30	2.2	30	83	2	78	38	4	9	47	1.56
11503867--11503901	3	11.7	3	100	0	70	0	0	65	34	0.93
11510271--11510335	30	2.2	30	83	2	78	38	4	9	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11514074--11514108	3	11.7	3	100	0	70	0	0	65	34	0.93
11518522--11518589	32	2.1	33	94	2	120	41	2	17	38	1.65
11530956--11531032	14	5.0	15	71	20	52	42	14	9	33	1.77
11530972--11531011	20	2.0	20	90	0	62	50	12	10	27	1.72
11530960--11531026	34	1.9	35	90	3	109	46	13	8	31	1.74
11531736--11531792	24	2.3	25	84	3	71	33	7	1	57	1.36
11535997--11536041	21	2.1	21	100	0	90	42	13	22	22	1.88
11547385--11547412	6	4.7	6	100	0	56	82	0	0	17	0.68
11547365--11547412	18	2.7	18	80	0	51	70	6	2	20	1.19
11571361--11571396	7	5.0	7	86	6	54	2	0	55	41	1.14
11571582--11571650	22	3.3	21	76	15	81	43	8	7	40	1.63
11572943--11573059	57	2.1	57	88	3	173	27	21	7	43	1.79
11575064--11575164	40	2.6	38	87	3	139	50	10	3	34	1.56
11590352--11590471	27	4.4	27	78	2	89	20	23	16	40	1.91
11592363--11592450	44	2.0	44	90	0	140	30	14	11	43	1.81
11592823--11593126	76	4.0	76	96	1	542	41	15	7	35	1.76
11593381--11593442	19	3.3	18	69	13	54	46	1	11	40	1.49
11593380--11593454	37	2.0	37	94	0	132	45	2	9	42	1.50
11593772--11593800	10	2.9	10	100	0	58	10	51	31	6	1.62
11593985--11594148	49	3.4	48	67	13	129	42	15	14	27	1.85
11593947--11594140	96	2.0	97	91	1	318	43	15	15	24	1.86
11594491--11594521	16	1.9	16	93	0	53	61	19	19	0	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11594568--11594593	6	4.3	6	100	0	52	46	0	53	0	1.00
11598465--11598495	13	2.4	13	100	0	62	29	0	0	70	0.87
11606807--11606851	19	2.3	20	84	3	56	44	4	2	48	1.35
11608034--11608075	18	2.3	18	84	8	50	38	4	0	57	1.20
11616120--11616152	5	6.8	5	96	3	59	36	21	0	42	1.53
11620239--11620297	16	3.6	16	81	9	66	55	3	0	40	1.16
11624985--11625028	22	1.9	24	86	9	65	47	2	9	40	1.48
11626450--11626479	15	2.0	15	100	0	60	46	0	20	33	1.51
11630281--11630337	23	2.5	23	85	5	71	14	19	21	45	1.85
11635473--11635657	50	3.7	50	78	2	149	28	23	27	20	1.99
11640490--11640624	68	2.0	69	83	1	173	43	3	4	48	1.41
11650999--11651087	39	2.3	37	81	12	101	41	4	2	51	1.34
11652435--11652631	67	3.0	64	71	18	190	41	4	4	50	1.42
11652504--11652619	61	1.9	58	84	5	151	43	4	2	50	1.36
11652827--11652852	11	2.4	11	100	0	52	34	0	11	53	1.37
11654967--11655052	27	3.2	27	94	0	154	3	43	33	19	1.68
11655173--11655270	51	1.9	51	85	8	137	25	23	3	47	1.66
11655226--11655262	11	3.2	12	88	7	51	27	18	5	48	1.70
11655269--11655319	19	2.5	21	84	15	79	41	0	3	54	1.19
11657381--11657428	21	2.3	21	81	0	60	31	41	22	4	1.73
11657629--11657660	7	4.9	7	85	14	50	46	0	0	53	1.00
11657692--11657867	22	8.4	22	85	9	244	45	30	0	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11657692--11657869	43	4.3	43	87	7	267	44	30	0	24	1.54
11657763--11657810	17	3.0	16	82	8	53	47	31	0	20	1.50
11657773--11657810	17	2.3	17	90	4	60	47	31	0	21	1.51
11657708--11657867	81	2.0	82	92	3	270	45	29	0	25	1.54
11657692--11657869	21	8.5	21	84	8	247	44	30	0	24	1.54
11657929--11657960	6	5.3	6	100	0	64	37	46	0	15	1.46
11657909--11657960	18	2.9	18	85	0	59	44	38	0	17	1.49
11657958--11658183	53	4.2	53	79	10	267	45	7	7	39	1.61
11661230--11661551	126	2.5	125	87	2	448	29	20	17	31	1.96
11661666--11661714	22	2.3	22	85	3	64	46	32	0	20	1.51
11661914--11661978	29	2.3	29	73	5	71	40	18	18	23	1.92
11662132--11662183	22	2.4	21	84	9	68	55	1	5	36	1.35
11662140--11662184	23	2.0	23	86	8	65	51	2	4	42	1.34
11670956--11670992	18	2.1	18	94	0	65	21	29	5	43	1.75
11677847--11677907	20	3.0	20	76	9	70	40	21	24	13	1.88
11679404--11679447	20	2.2	20	84	8	54	29	2	6	61	1.34
11684357--11684560	40	5.1	40	85	2	261	32	18	27	21	1.97
11684382--11684484	20	5.2	20	66	0	71	27	18	33	21	1.96
11686495--11686542	18	2.9	16	81	9	53	56	0	33	10	1.34
11686490--11686553	15	4.2	16	74	9	53	54	0	37	7	1.29
11690203--11690246	22	2.0	23	82	13	56	70	0	9	20	1.14
11695302--11695332	16	1.9	16	93	0	53	41	25	0	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11715836--11715894	29	2.0	29	96	0	109	33	16	25	23	1.96
11719200--11719250	20	2.5	20	90	0	75	31	31	17	19	1.95
11729502--11729735	117	2.0	117	100	0	468	45	17	9	28	1.79
11731870--11731923	23	2.2	24	80	12	65	57	5	1	35	1.33
11734679--11735050	185	2.0	185	100	0	744	24	11	19	43	1.85
11745451--11745495	21	2.1	21	95	0	81	40	13	6	40	1.71
11745831--11745928	51	1.9	51	81	4	117	45	14	5	34	1.67
11745951--11745992	17	2.5	17	84	0	57	64	2	0	33	1.07
11745956--11746017	27	2.3	27	81	10	74	61	1	0	37	1.06
11748054--11748078	7	3.6	7	100	0	50	28	0	12	60	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131