genome.fa.s9.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  75  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25162225--25162699	243	2.0	243	87	1	693	34	23	14	27	1.94
25163633--25163672	20	2.0	20	90	0	62	37	12	0	50	1.41
25170223--25170459	40	6.0	40	82	8	274	30	21	16	31	1.95
25170223--25170438	79	2.7	79	86	2	308	31	22	16	30	1.95
25172378--25172435	24	2.4	24	94	0	98	29	15	8	46	1.75
25175346--25175410	29	2.2	28	77	17	69	44	1	3	50	1.26
25176899--25176942	19	2.4	18	81	7	54	52	0	0	47	1.00
25177772--25177817	24	1.9	24	100	0	92	13	30	0	56	1.37
25187876--25187909	17	1.9	18	88	5	52	50	0	0	50	1.00
25188114--25188173	21	2.9	21	76	16	63	28	1	26	43	1.65
25190957--25191000	3	14.7	3	100	0	88	34	0	0	65	0.93
25196862--25196900	2	19.5	2	89	0	60	46	0	2	51	1.14
25197158--25197297	75	1.9	75	80	5	167	31	3	18	46	1.66
25197384--25197500	41	2.9	41	83	5	121	25	23	28	23	1.99
25199329--25199355	9	3.0	9	100	0	54	44	0	0	55	0.99
25201545--25201588	21	2.1	21	100	0	88	54	0	18	27	1.44
25218840--25218920	6	13.7	6	96	2	146	70	14	0	14	1.17
25218846--25218973	41	3.0	41	81	6	121	69	10	7	12	1.36
25218838--25218984	47	3.1	46	82	9	163	70	10	8	11	1.35
25219936--25220053	42	2.8	41	83	5	137	32	11	27	29	1.91
25221200--25221337	44	3.2	44	63	13	113	24	22	26	26	2.00
25221145--25221760	88	7.0	88	89	3	784	27	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25226623--25226660	18	2.2	18	90	9	62	71	2	5	21	1.19
25227603--25227708	52	2.0	53	98	1	205	24	7	16	50	1.71
25232174--25232302	52	2.5	52	97	2	242	22	8	16	52	1.70
25232277--25232326	24	2.1	24	100	0	100	12	12	12	64	1.51
25233240--25233317	40	2.0	40	87	10	115	21	12	25	39	1.89
25233296--25233467	70	2.5	70	77	1	184	25	21	22	30	1.99
25233839--25233876	12	3.2	12	92	0	58	39	5	10	44	1.61
25235138--25235164	12	2.2	12	100	0	54	33	0	40	25	1.56
25250516--25250590	34	2.2	33	79	13	82	49	4	0	46	1.20
25251533--25251599	31	2.2	31	83	0	80	16	22	50	10	1.75
25253787--25253814	14	2.0	14	100	0	56	35	21	7	35	1.81
25254996--25255229	62	3.7	62	90	2	333	48	8	6	35	1.61
25270134--25270191	21	2.8	21	89	0	80	31	36	10	22	1.88
25270287--25270374	45	2.0	45	88	4	133	31	20	19	28	1.97
25270381--25270568	51	3.7	50	83	6	236	31	28	17	22	1.96
25270383--25270567	101	1.8	101	89	3	291	31	27	17	23	1.97
25272153--25272448	62	4.7	62	92	1	448	35	6	9	48	1.61
25273008--25273076	18	3.8	17	90	3	84	1	27	36	34	1.66
25273020--25273079	6	10.0	6	88	0	93	0	30	35	35	1.58
25273720--25273754	14	2.5	14	95	0	61	40	5	20	34	1.76
25275961--25275996	14	2.6	14	95	0	63	30	36	0	33	1.58
25276648--25276700	24	2.2	24	80	6	63	49	9	3	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25276687--25276720	14	2.4	14	90	0	59	50	5	0	44	1.26
25277353--25277382	12	2.5	12	94	0	51	20	26	0	53	1.46
25279816--25279999	95	1.9	96	96	3	345	50	2	5	41	1.41
25283719--25283770	24	2.2	24	89	6	79	21	3	21	53	1.61
25287383--25287442	28	2.1	29	87	3	86	45	18	0	36	1.50
25287809--25287838	14	2.1	14	100	0	60	40	13	6	40	1.71
25287931--25287964	16	2.1	16	94	0	59	11	35	0	52	1.38
25303205--25303268	17	3.8	17	85	0	83	71	9	1	17	1.19
25307364--25307437	35	2.1	35	92	0	121	40	28	13	17	1.87
25329875--25330010	4	34.0	4	74	20	92	70	0	29	0	0.87
25329875--25330010	18	8.2	17	72	23	80	70	0	29	0	0.87
25329880--25330007	36	3.6	36	76	14	138	70	0	29	0	0.88
25329866--25330010	64	2.3	64	78	15	149	68	0	31	0	0.89
25329884--25330055	36	5.2	32	76	13	131	71	0	28	0	0.86
25329906--25330049	44	3.3	42	79	14	114	72	0	27	0	0.85
25329946--25330056	22	4.9	22	65	12	57	73	0	26	0	0.83
25336951--25336976	3	8.7	3	100	0	52	69	30	0	0	0.89
25337040--25337078	19	2.0	21	85	10	55	64	10	2	23	1.37
25337227--25337311	27	3.1	27	86	0	125	16	27	29	27	1.97
25337363--25337430	26	2.6	27	90	6	104	45	0	10	44	1.38
25338141--25338187	15	3.1	15	87	0	67	0	21	0	78	0.75
25338147--25338210	3	21.7	3	80	3	67	0	26	1	71	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25338138--25338212	6	12.0	6	78	13	53	0	24	1	74	0.89
25338569--25338662	20	4.6	21	74	18	65	23	13	2	60	1.44
25338571--25338643	21	3.6	21	75	14	55	23	15	0	61	1.33
25339135--25339188	18	3.1	18	84	15	69	12	0	37	50	1.41
25346868--25346912	20	2.2	20	84	11	56	15	13	8	62	1.54
25346934--25347002	20	3.5	20	81	0	84	17	20	11	50	1.76
25346948--25347025	22	3.7	22	76	6	65	16	20	8	53	1.69
25346950--25347028	20	3.8	20	74	12	70	17	18	10	53	1.72
25347546--25347631	20	4.4	20	72	17	83	20	15	9	54	1.68
25347564--25347639	38	2.0	37	85	7	100	21	14	6	57	1.59
25347627--25347656	11	2.9	10	90	9	51	20	3	0	76	0.92
25347497--25347708	20	10.6	20	67	17	77	18	15	7	58	1.59
25347679--25347718	21	2.0	21	85	5	55	20	17	10	52	1.72
25347885--25347926	18	2.4	18	80	15	52	66	0	0	33	0.92
25348021--25348054	2	17.0	2	100	0	68	50	0	0	50	1.00
25348063--25348263	20	10.0	20	71	8	131	20	18	9	51	1.74
25348163--25348215	19	2.7	19	73	2	52	24	22	1	50	1.59
25348090--25348236	40	3.7	39	76	6	145	21	17	7	53	1.69
25348316--25348378	20	3.2	20	82	6	65	26	17	6	49	1.71
25348340--25348391	20	2.6	19	82	14	61	28	17	3	50	1.64
25348604--25348657	20	2.7	21	85	8	76	24	9	11	55	1.64
25348594--25348672	40	2.0	40	85	5	106	24	15	11	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25348997--25349041	21	2.1	21	95	0	81	42	15	13	28	1.85
25349329--25349399	37	1.9	37	97	0	133	16	22	21	39	1.92
25355961--25356217	69	3.8	67	81	4	246	29	19	13	37	1.90
25359306--25359401	41	2.3	41	80	7	106	27	14	25	33	1.94
25361862--25361970	41	2.8	41	86	5	145	27	17	20	34	1.95
25366228--25366257	14	2.1	14	100	0	60	43	13	0	43	1.43
25368443--25368492	24	2.1	24	96	0	91	38	22	14	26	1.91
25369676--25369715	2	20.0	2	85	10	55	47	5	0	47	1.24
25369801--25369846	18	2.5	20	76	20	55	36	4	0	58	1.18
25372914--25373405	247	2.0	247	93	0	849	42	12	23	20	1.86
25379156--25379291	68	2.0	68	100	0	272	27	19	23	29	1.98
25382437--25382540	44	2.4	44	86	3	138	26	22	24	26	2.00
25384282--25384321	2	20.0	2	85	10	55	47	5	0	47	1.24
25384407--25384452	18	2.5	20	76	20	55	36	4	0	58	1.18
25387681--25387923	96	2.5	96	93	0	405	35	32	18	12	1.89
25387844--25388001	78	2.0	78	93	0	271	34	32	20	12	1.90
25388040--25388113	24	3.2	24	75	11	82	24	54	2	18	1.57
25388087--25388130	21	2.1	21	82	0	52	15	52	9	22	1.71
25390519--25390584	3	21.7	3	77	22	50	63	0	7	28	1.21
25392060--25392630	44	12.6	44	70	13	282	28	21	18	31	1.96
25391999--25392608	319	1.9	317	83	6	775	29	20	17	32	1.96
25392798--25392925	44	2.9	43	76	4	114	28	20	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25394212--25394254	16	2.7	15	79	10	50	0	20	0	79	0.74
25395678--25395702	13	1.9	13	100	0	50	8	0	24	68	1.16
25415577--25415617	20	2.0	21	86	13	59	63	0	9	26	1.25
25415624--25415672	14	3.5	13	78	13	53	75	2	0	22	0.90
25415622--25415676	21	2.7	20	81	16	67	74	1	0	23	0.91
25419112--25419143	12	2.6	13	85	14	50	37	0	6	56	1.25
25420962--25421066	54	1.9	54	84	0	138	19	26	27	26	1.99
25430743--25430824	43	1.9	43	89	0	128	32	20	14	31	1.93
25436947--25437112	81	2.0	82	98	1	325	34	12	8	44	1.72
25451297--25451337	18	2.2	19	91	4	66	21	19	0	58	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131