genome.fa.s9.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  106  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35211506--35211540	13	2.7	13	90	0	52	42	11	0	45	1.40
35213969--35214060	45	2.1	44	85	2	121	31	16	10	41	1.83
35213969--35214050	24	3.6	23	76	15	80	31	13	12	42	1.81
35214153--35214203	20	2.5	20	83	3	57	54	17	0	27	1.43
35214294--35214419	54	2.3	54	86	2	173	45	13	9	31	1.76
35215812--35215904	25	3.8	25	80	11	102	23	21	16	38	1.92
35215812--35215935	49	2.5	50	85	1	169	24	21	18	35	1.96
35215812--35215894	25	3.4	25	81	9	107	24	21	15	38	1.92
35215812--35215935	25	5.0	25	74	13	94	24	21	18	35	1.96
35215813--35215935	50	2.5	48	84	6	156	24	21	18	34	1.96
35217647--35217888	50	4.7	50	77	5	155	23	28	21	26	1.99
35224359--35224424	25	2.6	25	90	0	96	40	18	16	24	1.90
35224376--35224428	25	2.1	25	100	0	106	43	18	18	18	1.88
35229601--35229632	15	2.1	15	94	0	55	0	21	0	78	0.76
35229615--35229689	39	1.9	39	88	0	114	10	20	0	69	1.18
35232160--35232563	204	2.0	204	96	0	745	23	15	23	38	1.92
35233380--35233498	36	3.3	36	81	0	121	14	14	32	38	1.86
35236994--35237158	30	5.6	30	70	11	115	37	11	26	24	1.89
35237025--35237189	88	1.9	88	85	2	233	36	13	26	24	1.92
35244264--35244345	30	2.7	31	78	10	100	37	12	24	25	1.90
35249493--35249547	28	1.9	29	82	17	71	10	9	7	72	1.27
35252178--35252283	32	3.1	32	76	18	115	21	12	10	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35252180--35252291	38	3.1	39	81	12	125	21	11	10	56	1.65
35254234--35254280	20	2.3	20	85	7	60	25	17	29	27	1.97
35257273--35257322	25	2.0	25	96	0	91	40	12	14	34	1.82
35259453--35259512	6	9.7	6	80	7	66	75	1	6	16	1.10
35259453--35259512	13	4.8	12	78	8	66	75	1	6	16	1.10
35259453--35259505	19	2.8	18	83	8	70	77	1	7	13	1.06
35270732--35270819	42	2.1	42	87	4	124	19	34	23	22	1.97
35272035--35272090	25	2.2	25	84	6	69	33	12	25	28	1.92
35280620--35280658	20	2.0	20	85	10	53	20	20	15	43	1.88
35282237--35282276	10	3.8	10	81	12	53	37	0	5	57	1.21
35289134--35289178	20	2.3	20	84	3	56	77	2	17	2	0.97
35289183--35289220	15	2.3	18	86	13	55	65	0	28	5	1.14
35300971--35301047	20	3.8	20	81	6	102	12	25	18	42	1.86
35300972--35301047	40	1.9	40	94	0	134	13	26	18	42	1.87
35313677--35313721	22	2.0	22	91	0	72	40	26	4	28	1.75
35317432--35317461	15	2.0	15	93	0	51	26	10	30	33	1.89
35325845--35325907	9	6.3	9	77	18	63	1	25	1	71	1.04
35325849--35325906	23	2.5	24	83	8	75	1	25	1	70	1.06
35330112--35330144	2	16.5	2	100	0	66	51	0	48	0	1.00
35337414--35337478	20	3.5	20	68	21	61	10	24	0	64	1.25
35339807--35339847	20	2.0	20	86	9	57	29	0	9	60	1.28
35345324--35345355	15	2.1	15	94	0	55	0	15	12	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35358486--35358526	3	13.7	3	100	0	82	31	0	0	68	0.90
35359503--35359537	18	1.9	18	88	0	52	20	0	37	42	1.52
35363939--35364038	49	2.0	49	90	0	155	30	10	12	48	1.73
35369105--35369158	27	2.0	27	96	0	99	18	25	27	27	1.98
35369208--35369260	27	2.0	27	92	0	88	18	28	28	24	1.98
35369106--35369330	102	2.2	102	94	0	396	25	20	24	29	1.99
35369235--35369435	75	2.7	74	89	3	321	24	17	25	32	1.97
35380116--35380243	57	2.2	57	87	0	175	35	20	14	28	1.92
35380144--35380387	29	8.5	29	80	5	235	36	19	15	27	1.93
35380116--35380341	28	8.0	28	77	9	163	34	20	15	28	1.94
35380144--35380391	57	4.3	56	81	6	241	37	19	15	27	1.92
35385635--35385677	18	2.4	18	88	0	59	37	37	6	18	1.78
35385730--35385850	50	2.4	50	83	2	136	21	30	22	25	1.99
35396256--35396286	5	6.2	5	100	0	62	22	0	0	77	0.77
35398813--35398898	45	1.9	45	87	0	127	61	1	23	13	1.39
35401555--35401592	17	2.4	17	91	8	62	31	13	0	55	1.38
35405310--35405518	97	2.2	97	91	0	337	34	17	3	44	1.67
35407630--35407745	27	4.4	27	76	9	114	38	21	20	18	1.93
35407630--35407745	26	4.4	28	74	17	97	38	21	20	18	1.93
35407762--35407872	24	4.6	24	81	8	118	23	7	23	45	1.77
35407764--35407872	48	2.3	48	84	6	132	23	7	22	45	1.77
35407820--35407862	11	3.7	11	76	11	50	13	4	27	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35407941--35407997	27	2.1	27	81	12	64	22	26	19	31	1.98
35408044--35408214	32	5.4	32	86	6	204	20	19	20	39	1.92
35408797--35408826	14	2.1	14	93	0	51	33	0	16	50	1.46
35411322--35411420	42	2.3	43	83	11	132	32	25	15	27	1.95
35411321--35411518	43	4.6	45	79	9	184	32	26	14	26	1.95
35411342--35411518	43	4.1	43	81	7	189	33	27	14	24	1.94
35413783--35413818	16	2.3	15	86	13	54	47	0	8	44	1.33
35413790--35413825	16	2.2	16	90	0	54	50	2	8	38	1.47
35414239--35414289	26	2.0	26	84	0	66	19	5	33	41	1.76
35420925--35421014	35	2.6	35	83	0	117	43	14	15	26	1.85
35421089--35421141	27	2.0	26	82	10	63	50	13	7	28	1.68
35423322--35423357	14	2.6	14	86	0	54	72	0	22	5	1.05
35429935--35429978	23	1.9	22	82	17	54	36	25	0	38	1.56
35430122--35430308	51	3.7	50	79	4	214	31	25	17	25	1.97
35430121--35430304	101	1.8	101	86	3	271	31	25	17	25	1.97
35433159--35433203	20	2.3	19	84	7	54	24	33	11	31	1.90
35438342--35438431	33	2.6	35	72	11	87	26	28	16	27	1.97
35442215--35442250	18	2.0	18	94	0	63	47	0	22	30	1.52
35443160--35443206	23	2.0	23	100	0	94	19	38	0	42	1.51
35444132--35444188	29	2.0	29	86	6	80	47	0	22	29	1.52
35447527--35447679	38	4.0	38	80	11	143	33	10	11	44	1.75
35451443--35451497	22	2.5	22	93	0	92	16	14	32	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35455510--35455562	26	2.0	26	81	0	61	32	13	30	24	1.93
35455612--35455845	32	7.4	32	78	3	213	37	21	21	19	1.94
35455863--35455927	27	2.5	26	80	14	71	33	26	23	16	1.96
35455997--35456059	24	2.7	23	78	7	63	49	28	4	17	1.67
35456031--35456077	23	2.0	23	87	0	67	51	25	2	21	1.59
35456112--35456289	27	6.6	27	81	3	126	20	16	19	43	1.88
35456119--35456289	54	3.2	53	77	5	166	19	16	19	44	1.87
35456108--35456260	80	1.9	81	83	1	200	19	16	21	41	1.90
35459421--35459454	16	2.1	16	100	0	68	23	0	0	76	0.79
35460509--35460561	22	2.4	22	90	0	79	15	20	32	32	1.93
35460488--35460620	60	2.2	60	83	0	176	18	18	27	35	1.95
35460569--35460620	22	2.4	22	76	0	68	19	17	25	38	1.93
35464672--35464714	23	1.9	22	81	13	52	27	16	4	51	1.64
35468477--35468522	20	2.3	20	81	3	58	19	30	17	32	1.95
35472946--35473044	20	4.8	22	68	13	75	25	31	12	31	1.92
35472951--35473117	41	4.1	41	84	3	201	23	26	14	34	1.94
35474040--35474212	54	3.2	54	66	11	145	20	24	28	25	1.99
35473985--35474215	109	2.1	109	88	0	336	20	25	28	25	1.99
35477220--35477337	29	3.9	29	87	4	155	22	27	13	36	1.92
35477317--35477379	29	2.2	28	85	2	81	23	22	12	41	1.88
35477219--35477361	58	2.4	59	81	6	146	23	25	12	37	1.90
35479106--35479293	91	2.1	91	100	0	376	29	6	14	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35479647--35479729	43	1.9	43	87	0	121	31	26	19	22	1.98
35483331--35483426	48	2.0	48	100	0	192	29	16	16	37	1.91
35485071--35485124	10	5.5	10	74	25	53	24	27	18	29	1.98
35485068--35485124	20	2.9	20	89	10	91	22	28	17	31	1.97
35495484--35495677	77	2.6	76	84	8	236	20	37	3	38	1.69
35500639--35500698	30	2.0	30	86	0	84	18	16	23	41	1.90
35500669--35500777	43	2.6	43	85	1	139	27	18	24	29	1.98
35501876--35501902	13	2.1	13	100	0	54	51	0	11	37	1.37
35501953--35502079	9	15.0	9	71	15	67	46	17	0	35	1.54
35501954--35502076	66	1.9	62	90	8	194	47	17	0	34	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131