genome.fa.s9.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  14  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735493--4735518	13	2.0	13	100	0	52	76	0	0	23	0.78
4763475--4763705	119	1.9	117	87	8	340	33	2	14	49	1.57
4766431--4766483	22	2.4	22	100	0	106	33	13	33	18	1.90
4767128--4767180	19	3.0	17	73	10	52	35	9	20	33	1.85
4767152--4767206	22	2.5	23	88	5	78	36	3	16	43	1.65
4768450--4769133	345	2.0	344	93	0	1172	34	17	27	19	1.95
4769929--4770454	263	2.0	263	100	0	1052	22	19	25	33	1.97
4775741--4775809	30	2.3	30	95	2	122	39	4	8	47	1.54
4775754--4775826	30	2.4	29	84	6	92	41	2	8	47	1.47
4781401--4781498	48	2.0	48	90	3	153	55	11	17	16	1.69
4782296--4782450	77	2.0	78	98	1	303	38	3	12	45	1.61
4782500--4782582	20	4.1	20	67	13	53	16	20	13	49	1.79
4782992--4783040	20	2.5	20	82	0	62	57	10	14	18	1.65
4783048--4783103	21	2.8	20	75	5	67	58	0	19	21	1.39
4784243--4784432	20	9.6	20	67	15	74	52	12	13	22	1.73
4784264--4784391	40	3.2	39	75	16	113	54	12	10	21	1.68
4787101--4787144	18	2.6	17	80	13	56	70	11	9	9	1.34
4788010--4789065	44	23.9	44	79	4	942	32	23	12	31	1.92
4788018--4789065	88	11.9	88	88	1	1345	32	22	12	31	1.92
4788010--4789090	441	2.4	442	93	2	1782	32	23	12	31	1.92
4788945--4789094	45	3.4	44	80	9	187	28	24	19	28	1.98
4802308--4802355	19	2.5	19	86	3	69	60	8	14	16	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4817605--4817667	21	3.1	20	76	17	67	52	1	1	44	1.20
4822841--4822868	14	2.0	14	100	0	56	50	0	0	50	1.00
4834449--4834592	71	2.0	71	97	0	270	32	13	22	30	1.93
4839638--4839689	24	2.2	24	89	3	88	57	3	1	36	1.28
4840576--4840611	17	2.1	17	89	0	54	19	0	2	77	0.88
4843779--4843941	82	2.0	82	95	0	290	32	6	14	47	1.68
4852284--4852379	45	2.1	45	88	3	140	32	5	9	53	1.55
4855256--4855324	26	2.6	26	95	4	120	15	24	1	57	1.46
4855365--4855427	27	2.3	27	83	0	72	20	42	14	22	1.88
4865377--4865401	9	2.8	9	100	0	50	60	8	12	20	1.57
4866980--4867157	44	4.0	44	92	4	277	48	8	13	29	1.72
4866980--4867157	87	2.0	92	90	6	285	48	8	13	29	1.72
4867481--4867516	17	2.1	17	100	0	72	44	16	11	27	1.82
4873997--4874023	7	3.9	7	100	0	54	11	14	0	74	1.08
4883615--4883670	24	2.3	24	90	0	85	37	10	19	32	1.86
4883983--4884561	97	6.0	97	88	0	818	30	17	23	28	1.97
4884012--4884561	51	11.3	51	75	9	486	31	17	23	28	1.97
4884590--4884687	51	1.9	51	87	0	142	31	16	22	29	1.96
4886290--4886323	12	2.8	12	90	0	50	32	2	5	58	1.37
4887060--4887102	17	2.5	17	84	3	50	20	0	16	62	1.32
4887994--4888047	16	3.4	16	92	0	90	35	1	35	27	1.68
4888026--4888135	45	2.6	43	80	12	131	33	4	29	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888261--4888302	15	2.7	16	82	14	52	52	2	0	45	1.13
4888270--4888311	15	2.9	15	82	10	52	52	0	0	47	1.00
4894395--4894437	18	2.4	18	84	0	50	48	20	18	11	1.79
4894423--4894536	38	3.0	38	92	0	183	59	10	26	3	1.46
4899912--4900030	30	3.8	30	69	10	87	32	10	16	40	1.82
4903560--4903653	11	8.9	11	74	17	92	40	2	0	57	1.11
4903569--4903653	31	2.7	32	92	5	147	40	2	0	57	1.11
4903530--4903628	42	2.4	41	93	3	162	37	4	0	58	1.17
4903530--4903653	42	3.0	41	87	5	135	38	3	0	58	1.15
4905698--4905756	2	30.0	2	96	3	111	0	0	50	49	1.00
4907648--4907756	42	2.5	44	89	2	159	14	19	17	48	1.81
4907685--4907779	21	4.4	21	68	5	64	14	20	18	46	1.84
4913981--4914021	19	2.2	19	100	0	82	19	14	17	48	1.81
4916974--4917123	73	2.0	74	98	1	293	45	8	14	32	1.74
4920984--4921016	12	2.8	12	90	4	50	3	6	12	78	1.04
4938519--4938589	26	2.8	24	82	14	81	7	22	0	70	1.11
4938528--4938612	26	3.4	26	74	18	81	4	21	1	72	1.09
4938538--4938589	22	2.3	23	87	9	72	3	25	0	71	1.03
4938535--4938616	32	2.6	33	77	14	93	3	23	1	71	1.08
4938589--4938647	30	1.9	32	83	13	79	3	25	1	69	1.13
4938578--4938659	25	3.3	24	75	10	67	2	25	1	70	1.06
4938526--4938659	24	5.4	25	71	12	80	3	24	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4942018--4942077	22	2.9	22	87	7	81	8	1	15	75	1.12
4942014--4942077	19	3.2	20	88	8	94	7	1	15	75	1.11
4942098--4942140	11	3.9	11	75	0	50	23	13	9	53	1.69
4942925--4942965	21	1.9	22	90	5	66	65	14	4	14	1.42
4946350--4946375	6	4.3	6	100	0	52	80	0	19	0	0.71
4950881--4951222	50	6.8	50	84	1	434	20	30	22	26	1.98
4950881--4951222	149	2.3	150	85	1	452	20	30	22	26	1.98
4950921--4951222	99	3.0	99	87	0	415	20	31	21	26	1.98
4958565--4958866	50	5.7	50	76	12	253	21	31	21	25	1.98
4958565--4958776	100	2.1	101	85	0	282	21	31	20	26	1.98
4958714--4958842	66	2.0	66	88	0	195	19	34	23	23	1.97
4960225--4960304	36	2.2	37	84	8	110	37	28	16	17	1.91
4964534--4964657	61	2.0	61	100	0	248	22	16	14	46	1.83
4966058--4966100	21	2.0	22	83	16	56	39	0	9	51	1.34
4969295--4969423	67	1.9	67	87	3	188	47	7	24	20	1.76
4972518--4972577	28	2.2	27	88	8	86	33	25	21	20	1.97
5008040--5008082	21	2.0	21	86	13	61	39	0	23	37	1.55
5011011--5011141	40	3.3	40	85	2	174	21	29	15	33	1.94
5011149--5011239	40	2.3	40	84	0	119	15	27	23	34	1.94
5011177--5011238	20	3.1	20	67	17	56	12	27	22	37	1.91
5017603--5017650	20	2.6	17	73	20	51	20	16	2	60	1.46
5029093--5029252	73	2.2	73	89	4	243	34	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5034976--5035014	10	3.9	10	100	0	78	20	0	28	51	1.48
5035149--5035183	18	1.9	18	88	0	52	42	11	17	28	1.83
5054138--5054297	54	3.0	54	83	3	180	26	28	10	35	1.89
5054383--5054444	27	2.3	27	86	5	81	29	27	8	35	1.85
5055960--5056026	22	3.0	23	80	4	64	61	1	2	34	1.20
5055960--5056016	23	2.5	22	83	8	62	63	1	1	33	1.15
5066824--5066894	20	3.5	20	94	0	124	19	18	46	15	1.84
5067460--5067484	11	2.3	11	100	0	50	24	0	0	76	0.80
5069147--5069325	43	4.2	43	87	0	241	31	31	15	21	1.94
5076874--5076917	22	2.0	22	82	8	54	59	11	2	27	1.44
5081025--5081064	13	3.1	13	86	10	55	17	15	12	55	1.70
5089645--5089795	40	3.7	41	86	2	191	15	23	19	41	1.90
5089645--5089795	81	1.9	81	89	8	236	15	23	19	41	1.90
5094973--5095027	18	3.2	17	74	20	51	20	3	0	76	0.94
5094973--5095017	22	2.1	21	84	12	56	22	2	0	75	0.91
5094977--5095051	35	2.1	35	80	4	80	18	4	5	72	1.20
5096239--5096336	51	1.9	51	85	0	133	44	24	11	19	1.83
5098696--5098896	43	4.8	42	78	6	210	34	24	16	23	1.95
5098657--5098896	85	2.8	85	87	0	329	34	24	16	24	1.95
5098665--5098896	42	5.5	42	76	7	211	35	25	15	24	1.94
5101592--5101645	20	2.7	20	88	2	72	29	9	16	44	1.79
5102753--5102800	20	2.4	20	85	0	78	39	20	29	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5106261--5106304	22	2.0	21	86	4	61	65	2	6	25	1.28
5107052--5107230	40	4.5	39	80	8	175	21	30	15	32	1.94
5107052--5107212	80	2.0	80	84	7	211	21	31	13	34	1.92
5108323--5108366	19	2.3	19	84	7	54	25	18	6	50	1.71
5112535--5112619	40	2.1	40	84	0	107	27	21	18	32	1.97
5112779--5112888	54	2.0	54	100	0	220	23	12	18	45	1.83
5121798--5121841	22	2.0	22	95	0	79	25	36	15	22	1.94
5129560--5129777	27	8.1	27	85	0	265	16	18	23	41	1.89
5131284--5131316	13	2.5	14	85	14	52	39	9	15	36	1.79
5139656--5139840	40	4.6	40	78	7	189	18	28	18	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131