genome.fa.s9.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  109  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36225600--36225668	26	2.6	27	81	6	79	27	8	13	50	1.70
36225594--36225868	97	2.8	97	92	0	444	26	6	18	48	1.72
36225704--36225765	26	2.4	27	83	5	74	29	8	11	51	1.66
36227773--36227803	3	10.3	3	100	0	62	0	32	0	67	0.91
36235922--36235966	22	2.0	23	86	4	65	4	6	24	64	1.37
36236189--36236228	9	4.4	9	90	0	53	42	25	7	25	1.80
36238634--36238664	9	3.4	9	95	0	53	51	19	0	29	1.47
36240203--36240241	9	4.1	9	83	9	51	0	15	10	74	1.07
36242032--36242070	14	2.8	14	80	0	51	35	10	12	41	1.77
36242342--36242411	16	4.4	16	87	0	104	30	28	4	37	1.76
36242436--36242513	38	2.0	39	95	2	140	17	2	28	51	1.59
36242494--36242518	13	1.9	13	100	0	50	12	0	48	40	1.40
36242755--36243001	123	2.0	124	99	0	487	24	8	12	54	1.66
36251998--36252023	12	2.2	12	100	0	52	38	38	15	7	1.76
36258401--36258451	26	2.0	26	92	0	84	29	1	5	62	1.29
36261937--36261988	25	2.1	25	96	0	95	34	3	5	55	1.42
36265849--36265894	23	2.0	23	87	8	67	28	2	4	65	1.23
36265851--36265894	22	2.0	23	86	4	63	27	2	4	65	1.23
36272910--36273107	101	2.0	102	97	1	380	33	18	17	30	1.94
36282132--36282169	12	3.2	12	88	0	58	28	10	15	44	1.80
36296452--36296587	41	3.5	40	76	9	118	33	25	16	25	1.96
36296602--36296641	17	2.4	17	91	0	62	25	35	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36297334--36297436	22	4.4	22	81	8	91	38	19	25	16	1.92
36297334--36297459	25	5.3	24	86	6	134	38	19	24	16	1.92
36298405--36298472	5	13.8	5	96	3	129	58	0	0	41	0.98
36299284--36299343	10	5.6	10	73	19	50	5	20	3	71	1.19
36299360--36299427	8	8.4	8	71	20	52	51	1	1	45	1.19
36302996--36303039	16	2.8	15	86	10	61	72	13	0	13	1.12
36302996--36303037	20	2.1	20	86	8	59	73	14	0	11	1.09
36304609--36304835	44	5.2	44	68	15	112	28	24	18	29	1.98
36304543--36304833	132	2.2	132	84	4	381	26	24	18	30	1.98
36305423--36305524	45	2.2	45	76	8	107	51	8	13	25	1.70
36325889--36325975	39	2.2	40	89	6	133	41	2	4	51	1.35
36328756--36328792	16	2.3	16	95	0	65	45	16	2	35	1.61
36330886--36330922	20	2.0	20	84	10	51	67	2	13	16	1.34
36340999--36341036	19	2.0	19	100	0	76	21	10	5	63	1.46
36341001--36341042	19	2.2	19	91	0	66	28	7	4	59	1.44
36344324--36344387	32	2.0	32	85	11	87	45	4	3	46	1.39
36346188--36346245	26	2.2	26	81	6	64	18	20	20	39	1.92
36346186--36346367	25	7.4	25	66	17	76	19	24	21	35	1.96
36346234--36346379	73	2.0	73	81	10	174	19	26	21	32	1.97
36346259--36346441	25	7.4	25	72	8	106	20	25	21	32	1.97
36346975--36347012	3	12.7	3	83	10	51	39	0	0	60	0.97
36347982--36348077	39	2.5	39	80	6	108	22	23	26	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36352306--36352344	21	1.9	21	84	5	53	51	2	0	46	1.14
36361103--36361190	43	2.0	43	97	0	167	19	13	21	45	1.84
36367186--36367238	9	6.3	9	75	16	51	50	1	1	45	1.23
36369232--36369274	18	2.5	17	85	7	52	46	0	27	25	1.53
36369997--36370213	117	1.9	117	86	3	312	27	12	9	50	1.71
36371105--36371328	109	2.1	109	98	0	430	37	11	5	45	1.63
36373229--36373286	19	3.1	18	80	9	62	46	13	15	24	1.82
36373248--36373359	54	2.1	54	96	0	206	42	16	11	29	1.83
36373302--36373340	19	2.1	19	95	0	69	48	12	10	28	1.74
36374542--36375667	560	2.0	560	98	0	2182	32	15	20	31	1.94
36377290--36377333	23	1.9	23	90	0	70	61	6	0	31	1.22
36377294--36377336	11	3.8	11	80	17	52	65	4	0	30	1.13
36405602--36405653	24	2.2	24	89	0	77	53	7	3	34	1.48
36407739--36407827	26	3.2	28	74	18	87	60	3	1	34	1.20
36413765--36413804	4	10.0	4	84	10	55	75	2	0	22	0.93
36413766--36413818	13	4.2	13	79	13	58	75	3	1	18	1.05
36413937--36413996	15	4.1	15	79	14	72	56	0	1	41	1.09
36413945--36413997	3	17.3	3	81	11	63	60	0	0	39	0.97
36414994--36415036	5	8.6	5	82	10	52	4	11	2	81	0.93
36414994--36415037	14	3.0	14	80	9	52	4	13	2	79	0.98
36415966--36416000	2	18.0	2	94	5	63	51	0	0	48	1.00
36416093--36416119	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36416258--36416310	24	2.2	24	77	12	56	43	3	1	50	1.30
36416329--36416423	45	2.1	46	82	11	106	32	11	5	50	1.61
36417964--36418145	87	2.1	87	95	2	330	47	14	11	26	1.78
36420921--36420945	2	12.5	2	100	0	50	52	0	0	48	1.00
36421810--36422166	178	2.0	179	99	0	707	38	10	16	34	1.83
36424415--36424464	24	2.0	25	84	7	66	32	0	24	44	1.54
36435726--36435765	21	1.9	21	90	10	64	15	15	10	60	1.60
36435708--36435771	21	3.1	21	76	10	60	17	10	10	60	1.57
36435708--36435774	20	3.3	20	76	12	64	16	10	13	59	1.60
36440053--36440090	18	2.2	18	90	9	62	23	5	0	71	1.07
36442018--36442113	47	2.0	47	95	0	174	40	4	8	46	1.53
36447363--36447413	22	2.3	22	96	0	93	27	31	1	39	1.68
36447458--36447522	31	2.2	30	88	5	96	35	0	1	63	1.04
36454825--36454864	21	1.9	21	84	0	53	22	10	25	42	1.84
36455009--36455088	37	2.2	37	81	2	90	37	1	10	51	1.44
36455064--36455110	22	2.1	23	88	4	69	29	0	14	55	1.40
36455301--36455383	37	2.2	37	82	4	96	18	24	19	38	1.93
36455319--36455405	37	2.4	37	86	3	122	19	22	18	39	1.93
36456386--36456494	51	2.1	53	87	5	168	32	13	15	38	1.87
36457061--36457085	5	5.0	5	100	0	50	80	0	20	0	0.72
36467413--36467481	32	2.2	32	97	0	129	40	2	17	39	1.64
36480710--36480874	56	2.9	56	82	7	167	24	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36480749--36480874	28	4.5	28	89	3	182	25	21	18	34	1.96
36486229--36486322	39	2.4	39	89	0	134	43	21	2	32	1.64
36494941--36494993	18	3.3	16	75	17	56	43	0	1	54	1.11
36494951--36494991	18	2.3	18	91	0	64	48	0	2	48	1.14
36495751--36495783	5	6.4	5	96	3	57	21	0	0	78	0.75
36500578--36500616	20	2.0	20	89	0	60	43	17	17	20	1.88
36501649--36502020	196	1.9	196	90	0	600	25	13	26	34	1.93
36509532--36509572	8	5.1	8	96	0	64	31	0	24	43	1.54
36509532--36509578	24	2.0	24	82	0	58	34	2	23	40	1.67
36510004--36510048	10	4.5	10	80	0	54	28	2	20	48	1.61
36513954--36514243	128	2.3	124	86	2	382	31	24	16	28	1.96
36514401--36514495	17	5.5	17	71	5	66	44	11	5	38	1.63
36519006--36519044	1	39.0	1	94	0	69	0	0	97	2	0.17
36528986--36529031	15	2.9	17	78	15	55	45	13	0	41	1.43
36530300--36530342	18	2.3	19	88	8	61	44	6	0	48	1.29
36535328--36535423	50	1.9	50	86	0	138	28	20	14	36	1.92
36538458--36538486	15	1.9	15	100	0	58	24	20	0	55	1.44
36540562--36540587	2	13.0	2	100	0	52	50	0	0	50	1.00
36542561--36542788	43	5.3	43	93	0	357	26	30	19	22	1.98
36556434--36556467	14	2.4	14	95	0	59	32	44	0	23	1.54
36556459--36556499	21	2.0	20	85	4	55	39	41	0	19	1.52
36557557--36557789	41	5.7	41	89	5	332	31	27	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36557869--36557963	40	2.4	41	82	3	113	21	20	22	36	1.95
36573560--36573632	15	4.7	15	73	15	60	50	1	1	46	1.18
36574164--36574331	83	2.0	84	98	1	329	45	4	7	42	1.52
36576135--36576189	24	2.3	24	93	0	92	49	5	16	29	1.68
36577537--36577566	8	3.8	8	90	0	51	40	0	0	60	0.97
36577531--36577571	16	2.6	16	92	0	73	39	0	0	60	0.96
36580186--36580267	25	3.3	25	80	10	96	32	21	24	20	1.98
36584274--36584339	4	16.5	4	96	0	123	24	1	25	48	1.60
36596477--36596555	39	2.0	40	97	2	151	59	10	5	25	1.50
36597038--36597084	23	2.0	23	84	8	60	34	2	2	61	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131