genome.fa.s9.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  120  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39637082--39637184	17	5.6	19	71	20	69	28	3	0	66	1.15
39639917--39640090	86	2.0	87	98	1	341	35	16	5	43	1.71
39652811--39652842	4	7.8	4	96	3	55	78	21	0	0	0.76
39655347--39655375	2	14.5	2	100	0	58	51	0	48	0	1.00
39655517--39655754	2	119.5	2	99	0	469	0	50	0	50	1.00
39657281--39657307	2	13.5	2	100	0	54	48	0	0	51	1.00
39667874--39667993	34	3.6	34	79	5	145	30	13	15	41	1.85
39668100--39668150	24	2.3	23	83	10	61	33	23	13	29	1.93
39669634--39669760	40	3.2	40	75	9	127	31	24	19	24	1.98
39670254--39670283	8	3.9	8	91	8	53	60	0	0	40	0.97
39676929--39677079	19	8.3	19	64	25	62	49	1	1	48	1.18
39676938--39676962	13	1.9	13	100	0	50	60	0	0	40	0.97
39677043--39677067	13	1.9	13	100	0	50	40	0	0	60	0.97
39677064--39677088	13	1.9	13	100	0	50	60	0	0	40	0.97
39676931--39677158	126	1.8	127	93	2	397	47	2	1	48	1.26
39678821--39678857	2	18.5	2	100	0	74	51	0	0	48	1.00
39681390--39681429	21	1.9	21	84	0	53	35	0	2	62	1.09
39686704--39686754	20	2.5	19	78	12	57	39	13	25	21	1.90
39686946--39687004	10	5.8	10	76	11	57	28	1	3	66	1.18
39686949--39687005	9	5.8	9	75	15	51	28	1	3	66	1.18
39687028--39687094	19	3.5	19	74	10	64	32	1	4	61	1.25
39699034--39699124	4	22.8	4	100	0	182	25	0	24	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39706414--39706582	84	2.0	84	98	0	329	21	21	40	16	1.91
39707344--39707385	21	2.0	21	95	0	75	33	11	9	45	1.73
39717983--39718025	20	2.1	21	86	4	61	65	0	0	34	0.93
39718074--39720013	970	2.0	970	100	0	3880	34	26	12	25	1.92
39720512--39720686	85	2.1	85	96	0	323	32	22	14	30	1.94
39721689--39721758	24	2.9	24	89	0	113	12	48	4	34	1.61
39725899--39725973	33	2.3	33	92	0	123	28	20	20	32	1.97
39729807--39729832	13	2.0	13	100	0	52	46	0	0	53	1.00
39731419--39731579	41	3.9	41	92	0	259	28	24	19	27	1.98
39744872--39744905	17	2.0	17	88	0	50	14	8	5	70	1.31
39745363--39745468	30	3.5	30	81	11	110	44	10	13	32	1.77
39747679--39747726	23	2.2	22	85	10	64	68	0	2	29	1.01
39753572--39753597	6	4.3	6	100	0	52	50	30	0	19	1.48
39768462--39769242	392	2.0	392	91	1	1262	32	25	16	26	1.96
39789568--39789749	91	2.0	91	95	2	330	41	15	4	37	1.69
39791663--39791717	2	27.5	2	92	0	92	47	1	0	50	1.11
39798095--39798184	36	2.4	36	92	3	144	22	6	34	36	1.80
39799003--39799162	85	1.9	87	85	5	227	40	13	10	36	1.79
39799387--39799440	26	2.1	26	86	6	74	59	0	1	38	1.08
39799425--39799498	20	3.8	19	76	18	71	63	1	2	32	1.17
39799382--39799614	9	24.8	9	65	20	70	61	1	5	31	1.27
39799425--39799497	10	7.4	10	74	9	60	64	1	2	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39799561--39799609	19	2.7	18	81	12	55	65	2	6	26	1.27
39799798--39799860	30	2.1	30	85	5	83	31	1	3	63	1.19
39804412--39804474	30	2.1	30	96	0	117	58	14	1	25	1.45
39804554--39804584	11	2.8	11	100	0	62	74	0	9	16	1.07
39807913--39808978	308	3.5	307	88	4	1459	50	7	10	30	1.65
39807913--39808680	155	5.0	154	82	7	961	52	7	10	30	1.63
39810619--39810655	12	3.1	12	88	0	56	21	43	32	2	1.67
39811086--39811585	124	4.0	124	97	0	937	41	14	11	33	1.80
39814448--39814534	37	2.3	38	84	11	108	52	10	4	32	1.56
39814523--39814567	23	2.0	23	82	8	56	55	17	2	24	1.53
39820506--39820664	79	2.0	80	98	1	311	38	8	7	44	1.64
39822636--39822666	16	1.9	16	93	0	53	54	16	0	29	1.42
39825033--39825136	41	2.5	42	81	6	133	30	28	16	24	1.96
39826665--39826689	13	1.9	13	100	0	50	40	24	4	32	1.73
39828927--39829035	56	2.0	56	90	1	175	44	11	22	22	1.85
39829737--39829845	56	2.0	56	90	1	175	44	11	22	22	1.85
39828825--39830447	810	2.0	811	99	0	3239	37	21	20	20	1.94
39830678--39830722	18	2.3	19	85	11	56	2	6	11	80	0.99
39830892--39830929	18	2.1	18	85	9	51	13	5	36	44	1.66
39831532--39831647	45	2.6	46	85	6	150	28	17	20	33	1.95
39831474--39831779	44	6.9	44	72	13	135	27	19	20	32	1.97
39831518--39831787	44	6.0	44	71	13	181	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39831803--39832654	100	8.5	100	86	2	1034	25	20	21	32	1.98
39832678--39833029	89	4.0	89	89	1	517	25	25	22	26	2.00
39832819--39832957	44	3.1	44	69	13	113	21	26	25	26	1.99
39832774--39833002	45	5.1	44	69	13	128	24	25	23	27	2.00
39833977--39834010	10	3.2	10	91	8	50	0	11	2	85	0.71
39834479--39834515	8	4.6	8	86	0	56	8	10	5	75	1.17
39836350--39836402	24	2.2	25	86	3	72	45	5	22	26	1.74
39838810--39838919	56	2.0	56	92	0	184	43	11	22	21	1.85
39839745--39839801	23	2.5	22	80	11	62	7	7	8	77	1.13
39839979--39840016	18	2.1	19	90	9	62	10	5	39	44	1.61
39839985--39840022	17	2.2	17	86	9	51	13	5	39	42	1.66
39840930--39840986	29	2.0	28	86	6	80	38	1	0	59	1.08
39849774--39849839	18	3.6	17	75	15	53	21	28	1	48	1.59
39853404--39853484	33	2.7	28	72	17	72	29	22	23	24	1.99
39853648--39853712	27	2.4	27	85	9	89	33	23	24	18	1.96
39853869--39853949	26	3.0	27	82	8	94	24	18	18	38	1.93
39853881--39854260	26	14.6	26	85	6	371	24	15	20	40	1.91
39853881--39854260	52	7.3	52	82	5	428	24	15	20	40	1.91
39853881--39854260	78	4.9	78	81	4	410	24	15	20	40	1.91
39855973--39856028	25	2.2	25	78	6	60	35	25	21	17	1.95
39856143--39856218	25	3.0	25	75	5	82	39	19	21	19	1.93
39856122--39856218	50	1.9	50	88	12	146	37	21	23	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39858271--39858308	14	2.9	13	85	11	51	65	0	7	26	1.19
39863793--39863835	19	2.2	20	83	8	52	30	23	2	44	1.66
39868435--39868477	19	2.2	20	83	8	52	30	23	2	44	1.66
39870651--39870688	19	2.0	19	100	0	76	31	26	10	31	1.90
39874267--39874304	18	2.2	18	85	4	51	18	10	5	65	1.41
39876680--39876758	36	2.2	36	88	4	115	17	12	27	41	1.86
39879473--39879623	43	3.5	43	86	0	205	23	29	18	28	1.98
39879472--39879632	86	1.9	86	87	3	236	22	29	18	29	1.97
39880347--39880390	21	2.1	21	87	8	63	34	2	15	47	1.58
39880363--39880387	12	2.1	12	100	0	50	32	0	16	52	1.44
39880515--39880570	17	3.1	18	76	21	55	53	0	5	41	1.24
39881065--39881094	14	2.1	14	93	0	51	53	10	13	23	1.69
39882081--39882131	16	3.2	16	74	0	57	29	15	43	11	1.82
39882601--39882833	41	5.6	41	91	2	351	23	21	26	28	1.99
39882932--39882982	26	2.0	26	84	0	66	58	5	11	23	1.55
39883241--39883273	14	2.3	15	89	5	50	30	0	30	39	1.57
39884440--39884486	19	2.5	19	92	0	85	42	10	8	38	1.70
39884904--39884928	8	3.1	8	100	0	50	36	0	24	40	1.55
39888243--39888504	43	6.3	43	78	7	263	22	18	31	28	1.97
39888283--39888504	79	2.7	81	81	8	254	22	18	31	27	1.97
39888986--39889038	25	2.1	26	82	3	63	18	3	5	71	1.21
39888985--39889038	19	2.8	18	78	10	54	20	3	5	70	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39889461--39889612	50	2.9	51	84	5	164	25	21	30	21	1.98
39889507--39889612	50	2.1	50	91	0	167	25	22	33	18	1.97
39889764--39889816	20	2.6	20	79	8	54	24	1	7	66	1.28
39890479--39890535	22	2.6	22	78	10	64	35	33	1	29	1.68
39890565--39890602	15	2.7	14	84	8	51	42	26	0	31	1.56
39890838--39890905	23	2.9	24	87	10	97	22	8	7	61	1.50
39890916--39890970	16	3.8	15	77	11	53	50	3	3	41	1.37
39890997--39891372	41	9.2	40	78	6	265	33	27	18	19	1.96
39890997--39891372	82	4.6	81	80	7	359	33	27	18	19	1.96
39890997--39891392	123	3.2	122	80	5	406	34	28	18	19	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131