genome.fa.s9.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  56  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18379724--18379781	18	3.1	18	78	14	64	46	1	51	0	1.11
18379741--18379777	14	2.6	15	83	12	51	45	0	54	0	1.00
18387326--18387373	20	2.5	20	80	16	64	56	6	25	12	1.59
18392486--18393089	302	2.0	302	91	1	969	33	14	18	32	1.92
18396627--18396660	18	1.9	18	88	5	52	14	35	29	20	1.93
18396983--18397104	64	1.9	64	93	0	208	40	26	5	27	1.78
18403491--18403656	46	3.6	46	99	0	323	33	21	18	26	1.96
18407347--18407380	16	2.1	16	88	5	50	23	2	2	70	1.15
18414379--18414450	20	3.6	19	74	12	65	37	19	30	12	1.89
18414386--18414465	40	2.0	39	82	2	97	35	20	31	13	1.91
18416212--18416287	29	2.6	29	93	0	125	30	23	21	25	1.99
18423442--18423477	12	2.8	13	91	8	65	25	13	0	61	1.33
18423440--18423495	25	2.2	25	77	0	58	23	17	1	57	1.50
18423513--18423555	15	3.1	15	78	21	58	13	6	13	65	1.46
18433660--18433712	16	3.3	16	91	0	79	39	3	30	26	1.74
18433694--18433786	44	2.1	46	88	8	138	31	4	26	37	1.76
18433907--18433943	18	2.1	18	90	5	58	54	2	2	40	1.29
18434692--18434912	113	2.0	112	91	0	361	30	22	9	37	1.86
18442135--18442164	14	2.2	13	94	5	51	30	30	23	16	1.96
18442928--18442988	23	2.6	22	84	7	68	22	26	0	50	1.49
18442933--18442988	12	4.8	12	78	8	53	19	26	0	53	1.45
18442928--18442995	23	3.0	23	82	8	59	23	26	1	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18443582--18443648	29	2.3	28	80	14	73	31	14	2	50	1.58
18450018--18450056	13	3.0	13	88	0	60	46	17	2	33	1.62
18450300--18450368	20	3.5	20	77	0	75	34	18	23	23	1.96
18450280--18450390	40	2.8	40	73	0	105	32	20	24	22	1.98
18460064--18460121	12	4.4	12	74	16	53	43	17	0	39	1.49
18460679--18460733	20	2.8	20	82	0	65	25	18	38	18	1.93
18469885--18470370	241	2.0	242	91	1	787	32	17	21	28	1.96
18473117--18473179	33	1.9	32	81	12	74	57	3	6	33	1.40
18473225--18473249	13	1.9	13	100	0	50	68	0	0	32	0.90
18473794--18473851	22	2.7	21	76	10	53	41	17	3	37	1.66
18473830--18473884	21	2.7	21	86	5	78	36	12	9	41	1.75
18474443--18474907	44	10.8	44	72	12	338	27	21	20	30	1.98
18474413--18474690	128	2.2	129	90	0	432	29	20	21	29	1.98
18474532--18474923	216	1.8	216	94	0	703	26	23	20	30	1.99
18474923--18475103	99	1.8	100	87	1	274	27	20	20	30	1.98
18474934--18475136	99	2.0	100	82	2	248	26	21	21	31	1.98
18475325--18475572	44	5.7	44	90	3	378	29	26	19	25	1.99
18476480--18476506	14	1.9	14	100	0	54	55	7	14	22	1.64
18477568--18477600	15	2.2	15	89	10	50	48	0	15	36	1.45
18477853--18477910	22	2.7	21	76	10	53	41	17	3	37	1.66
18479059--18479089	16	1.9	16	93	0	53	51	16	3	29	1.59
18481916--18482085	27	6.3	27	81	1	205	41	22	16	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18481916--18482085	82	2.1	81	86	3	234	41	22	16	19	1.90
18482449--18482530	27	3.0	27	89	5	130	20	23	24	31	1.98
18482445--18482520	27	2.8	28	93	4	136	22	22	25	30	1.99
18482451--18482557	33	3.6	30	85	7	89	22	24	26	27	2.00
18503503--18503535	16	2.1	16	100	0	66	48	21	18	12	1.80
18508017--18508052	16	2.3	15	90	4	54	13	0	13	72	1.13
18510868--18510941	37	2.0	37	100	0	148	40	18	5	35	1.74
18511821--18511853	13	2.5	13	95	0	57	45	30	6	18	1.73
18513342--18513386	24	1.9	23	90	4	72	82	4	0	13	0.82
18513349--18513414	20	3.5	19	78	15	66	81	6	3	9	0.95
18514667--18514702	3	12.0	3	100	0	72	66	0	0	33	0.92
18514720--18514778	23	2.5	24	76	15	61	62	6	6	23	1.44
18524844--18524904	30	2.0	31	90	6	97	31	0	27	40	1.57
18531670--18531724	19	2.9	19	81	7	60	32	1	0	65	1.03
18531670--18531721	10	5.4	10	77	9	54	34	1	0	63	1.06
18533804--18533844	21	2.0	21	86	13	59	53	7	0	39	1.29
18536314--18536345	13	2.4	14	89	10	57	40	21	0	37	1.54
18537474--18537536	32	2.0	32	90	0	99	41	12	9	36	1.76
18540037--18540166	44	2.9	45	73	8	113	30	20	19	30	1.97
18540097--18540457	145	2.5	145	82	2	402	29	19	18	33	1.95
18540238--18540734	234	2.1	235	88	0	735	31	21	15	31	1.95
18540610--18540731	44	2.7	44	80	7	122	33	23	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18541625--18541712	6	14.7	6	76	17	67	3	11	1	84	0.81
18541626--18541712	5	17.8	5	77	16	69	3	11	1	83	0.81
18541623--18541712	43	2.1	42	87	2	126	3	11	1	84	0.79
18541625--18541714	37	2.5	37	81	13	107	4	11	1	83	0.84
18541623--18541712	1	90.0	1	71	0	54	3	11	1	84	0.79
18541792--18541824	14	2.3	15	89	5	50	27	33	12	27	1.92
18547279--18547409	65	2.0	65	96	0	244	42	10	28	18	1.83
18550979--18551012	15	2.3	15	94	0	59	64	17	0	17	1.29
18553333--18553490	44	3.7	41	76	12	151	28	21	20	29	1.98
18553807--18553979	88	2.0	88	86	2	240	26	26	20	27	1.99
18565962--18565995	15	2.3	15	94	0	59	64	17	0	17	1.29
18573437--18573470	18	1.9	18	88	5	52	14	2	14	67	1.34
18574204--18574324	44	2.8	43	85	7	163	22	17	28	31	1.96
18576527--18576914	205	1.9	205	98	0	749	30	10	24	34	1.89
18579395--18579453	26	2.3	26	85	8	77	44	15	15	25	1.85
18579463--18579558	26	3.8	26	72	9	65	32	22	23	20	1.98
18582584--18582624	13	3.2	13	86	10	50	41	7	4	46	1.53
18586649--18586708	29	2.1	29	96	0	111	28	16	10	45	1.80
18592225--18592254	14	2.1	14	93	0	51	26	30	23	20	1.98
18592416--18593337	70	13.2	70	78	0	768	30	26	17	24	1.97
18595373--18595416	17	2.6	17	85	3	63	47	0	11	40	1.39
18595510--18595554	3	15.0	3	90	0	54	60	2	6	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18595537--18595596	21	2.9	20	74	16	59	65	6	1	26	1.27
18595870--18595967	21	4.7	21	85	8	121	42	14	7	35	1.73
18595870--18595968	40	2.3	43	88	10	143	42	14	7	36	1.72
18596416--18596523	44	2.5	44	83	7	132	28	20	20	30	1.97
18596997--18597139	44	3.2	43	68	13	128	23	24	25	26	2.00
18596988--18597445	88	5.2	88	88	1	648	21	24	26	27	1.99
18597261--18597404	44	3.3	44	68	3	128	27	24	23	25	2.00
18597397--18597494	49	2.0	49	91	0	160	17	21	35	25	1.95
18603784--18603816	17	1.9	17	93	0	57	51	0	12	36	1.39
18603952--18603993	3	14.0	3	89	0	66	64	2	2	30	1.19
18604330--18604404	21	3.7	20	87	8	116	40	13	10	36	1.79
18605320--18605394	39	1.9	39	97	0	141	40	13	18	28	1.88
18612008--18612159	43	3.6	43	74	1	153	30	21	21	27	1.98
18612024--18612186	85	1.9	85	84	0	218	28	20	22	28	1.99
18612189--18612290	43	2.4	43	83	0	123	35	27	13	23	1.93
18617988--18618235	9	26.7	9	72	12	171	38	0	18	43	1.53
18617988--18618250	56	4.7	56	91	0	418	38	0	18	43	1.53
18620396--18620830	115	3.8	113	79	4	406	36	21	15	26	1.93
18621342--18621604	7	36.9	7	67	14	56	44	30	1	22	1.62
18621342--18621609	14	18.8	14	69	12	100	45	30	1	23	1.62
18621426--18621469	15	3.0	15	86	3	63	47	34	0	18	1.49
18621428--18621609	22	8.5	21	67	18	61	46	28	1	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18621428--18621599	72	2.4	72	87	0	245	45	29	1	23	1.63
18621504--18621542	15	2.7	15	92	4	62	41	35	0	23	1.55
18621720--18621830	49	2.3	49	82	3	125	28	26	20	24	1.99
18624493--18624662	30	5.7	31	86	8	221	34	23	2	39	1.68
18624493--18624631	59	2.3	59	93	1	242	35	25	0	38	1.61
18625110--18625206	4	24.5	4	70	19	62	73	0	26	0	0.84
18625110--18625209	7	13.3	7	68	20	51	74	0	26	0	0.83
18625114--18625179	11	6.6	10	73	16	57	75	0	24	0	0.80
18625110--18625211	29	3.7	28	78	10	95	74	0	25	0	0.82
18625108--18625202	33	2.8	34	80	17	94	72	0	27	0	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131