genome.fa.s9.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  121  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39902956--39903010	28	1.9	29	85	3	76	36	9	1	52	1.44
39902987--39903011	3	8.3	3	100	0	50	32	0	0	68	0.90
39903026--39903050	7	3.6	7	100	0	50	36	0	0	64	0.94
39903700--39904460	109	7.0	109	94	0	1297	31	17	17	34	1.93
39908422--39908468	25	1.9	24	82	4	58	55	21	4	19	1.60
39909097--39909496	77	5.2	77	77	7	382	47	9	10	32	1.70
39909120--39909496	154	2.4	154	81	3	438	48	9	9	32	1.69
39909397--39909439	19	2.3	19	83	0	50	53	6	2	37	1.41
39909451--39909541	27	3.2	27	69	19	76	47	9	13	29	1.75
39909884--39910028	41	3.5	41	72	9	98	33	26	22	17	1.96
39926444--39926481	18	2.1	19	90	5	60	21	21	5	52	1.66
39931170--39931237	29	2.3	29	80	7	75	63	5	1	29	1.27
39936215--39936506	146	2.0	146	95	0	530	39	14	19	26	1.90
39939560--39939678	36	3.3	35	81	11	134	40	31	14	14	1.85
39942190--39942218	14	2.1	14	100	0	58	65	6	0	27	1.18
39942201--39942240	18	2.2	18	86	4	53	57	10	2	30	1.45
39943707--39943749	21	2.0	21	82	8	52	55	9	4	30	1.52
39945660--39945697	19	2.0	19	100	0	76	31	10	26	31	1.90
39952757--39952809	18	2.9	18	77	2	52	41	43	5	9	1.61
39954141--39954198	9	6.4	9	79	0	71	29	8	18	43	1.80
39954141--39954198	27	2.1	27	87	0	80	29	8	18	43	1.80
39956626--39956657	16	2.0	16	100	0	64	43	31	18	6	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39959716--39959771	25	2.2	26	93	3	96	39	19	12	28	1.88
39961012--39961121	41	2.7	41	88	1	168	18	21	28	31	1.97
39961584--39961620	19	1.9	19	89	10	58	32	8	13	45	1.73
39961432--39961657	77	3.0	77	78	7	253	31	12	10	45	1.75
39961636--39961684	26	1.9	25	91	4	80	44	10	6	38	1.63
39961912--39961944	16	2.1	16	100	0	66	18	0	12	69	1.18
39962044--39962074	13	2.3	14	94	5	55	19	0	12	67	1.22
39962266--39962310	18	2.5	18	100	0	90	57	6	4	31	1.44
39962374--39962423	23	2.2	23	85	3	66	42	6	2	50	1.38
39962583--39962928	77	4.5	77	78	6	333	32	11	9	46	1.72
39962604--39962928	154	2.1	154	81	5	370	32	11	9	46	1.72
39964366--39964403	12	3.2	12	88	7	51	52	0	0	47	1.00
39966225--39966278	14	3.9	14	80	4	65	24	0	29	46	1.53
39975948--39975988	9	4.6	9	85	8	57	46	0	31	21	1.52
39976863--39976914	24	2.2	24	89	0	77	36	3	9	50	1.54
39980659--39980699	17	2.4	17	88	11	66	46	14	0	39	1.45
39980161--39981195	514	2.0	515	97	0	1957	38	20	8	31	1.84
39982879--39983025	42	3.4	43	78	11	126	29	27	19	23	1.98
39987285--39987333	24	2.0	24	88	0	71	38	4	10	46	1.57
39990315--39990357	18	2.4	17	85	11	59	41	0	16	41	1.48
40000385--40000507	40	3.1	40	85	3	169	35	20	21	22	1.96
40000525--40000805	41	6.9	41	90	2	449	19	24	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40001555--40001598	18	2.4	20	71	21	51	36	0	13	50	1.42
40001815--40001880	18	3.8	18	73	20	68	21	3	42	33	1.68
40001824--40001880	18	3.3	18	77	22	77	19	3	42	35	1.68
40001765--40002033	111	2.4	114	85	5	341	30	1	25	42	1.64
40002926--40002993	23	2.9	23	71	4	64	42	8	4	44	1.55
40002862--40003049	107	1.8	105	83	8	258	39	11	7	40	1.71
40006964--40007007	23	2.0	22	86	4	61	31	0	13	54	1.39
40007158--40007552	43	9.2	43	86	0	504	25	17	29	26	1.97
40007655--40007751	49	2.0	49	100	0	194	30	17	26	24	1.97
40011976--40012008	13	2.6	13	90	4	50	30	6	9	54	1.56
40026736--40027040	40	7.5	40	92	5	499	27	20	28	23	1.99
40034450--40034733	142	2.0	142	96	1	525	27	18	22	31	1.97
40044729--40044912	40	4.5	41	93	4	295	27	20	27	23	1.99
40050042--40050086	22	2.0	22	83	8	56	40	4	0	55	1.20
40067277--40067488	33	6.5	33	74	18	169	19	19	28	32	1.96
40067300--40067646	75	4.8	75	78	10	391	21	19	26	32	1.97
40067272--40067457	102	1.8	102	97	0	354	20	18	29	31	1.97
40067275--40067533	135	2.0	129	88	4	383	20	18	27	32	1.97
40067439--40067646	76	2.8	75	87	0	290	22	19	25	33	1.97
40071401--40071429	14	2.1	14	100	0	58	17	27	13	41	1.87
40073477--40073558	41	2.0	41	97	0	155	21	24	13	40	1.89
40082570--40082623	2	27.0	2	100	0	108	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40096737--40096761	4	6.2	4	100	0	50	52	24	0	24	1.48
40098651--40098977	73	4.5	72	75	7	232	36	21	12	29	1.90
40098703--40098982	73	3.8	72	79	5	274	35	21	12	30	1.91
40098700--40098976	147	1.9	147	82	3	351	35	21	12	30	1.91
40103673--40103728	20	2.8	20	81	2	69	55	3	0	41	1.17
40103685--40103758	20	4.2	19	68	28	65	58	4	0	37	1.17
40122498--40122538	13	2.9	15	82	17	61	68	7	12	12	1.39
40122504--40122536	12	2.7	12	95	4	57	72	6	9	12	1.26
40130261--40130319	31	1.9	30	89	3	91	40	6	1	50	1.39
40134522--40134730	92	2.3	91	86	5	278	45	3	3	46	1.39
40134658--40134705	26	1.9	25	84	16	64	45	0	2	52	1.12
40134880--40134921	15	2.7	16	82	14	52	45	0	2	52	1.13
40134871--40134912	15	2.9	15	82	10	52	47	0	0	52	1.00
40135141--40135210	16	4.4	16	87	0	86	35	31	0	32	1.58
40135419--40135443	7	3.6	7	100	0	50	0	0	12	88	0.53
40137113--40137141	1	29.0	1	100	0	58	100	0	0	0	0.00
40138316--40138340	13	1.9	13	100	0	50	48	0	8	44	1.32
40139903--40140031	40	3.2	40	72	10	145	41	3	3	51	1.36
40139870--40140033	81	2.0	82	98	1	321	41	4	3	50	1.41
40150314--40150545	115	2.0	116	98	0	448	34	7	17	39	1.79
40155787--40155983	46	4.6	45	80	12	243	28	22	14	34	1.94
40155873--40155947	37	2.0	37	92	0	123	26	21	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40155827--40155983	83	1.9	83	90	0	251	29	22	13	34	1.92
40156416--40156627	30	7.1	30	100	0	424	36	36	6	19	1.78
40161846--40161904	30	2.0	30	96	0	109	11	35	10	42	1.76
40163855--40163892	2	19.0	2	100	0	76	50	0	50	0	1.00
40166589--40166663	23	3.3	23	92	0	123	34	26	21	17	1.95
40167583--40167627	19	2.4	19	88	0	63	44	15	4	35	1.67
40167594--40167636	19	2.3	19	87	0	59	48	16	6	27	1.71
40168016--40168093	28	2.8	28	92	0	129	34	20	16	28	1.94
40168339--40168742	201	2.0	202	98	0	783	34	20	20	24	1.96
40169376--40169429	3	17.7	3	92	3	90	31	0	1	66	1.02
40175062--40175133	26	2.8	26	87	2	101	37	8	19	34	1.82
40181695--40181749	19	2.8	19	80	2	65	67	0	3	29	1.08
40181913--40181974	24	2.4	26	76	15	65	58	1	6	33	1.34
40182712--40182784	19	3.5	19	70	20	56	39	34	1	24	1.64
40183225--40183284	16	3.8	16	95	0	102	23	23	0	53	1.46
40186921--40186962	22	1.9	22	85	9	59	85	4	2	7	0.80
40187273--40187331	31	1.9	31	82	0	73	8	6	38	45	1.61
40205127--40205172	24	1.9	25	82	8	60	50	0	2	47	1.13
40205868--40205898	14	2.2	14	94	0	53	90	0	9	0	0.46
40207169--40207208	20	2.0	20	85	9	55	22	5	2	70	1.19
40217074--40217117	20	2.2	20	83	0	52	38	15	13	31	1.87
40220628--40220661	13	2.6	13	80	0	50	76	2	2	17	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40220626--40220688	22	2.7	24	80	9	76	68	4	3	23	1.24
40221110--40221652	271	2.0	271	100	0	1086	32	15	18	34	1.92
40222524--40222562	20	2.0	20	89	0	60	35	10	17	35	1.84
40223413--40223497	30	2.9	30	91	1	136	36	1	38	23	1.63
40229052--40229093	21	2.0	21	95	0	75	35	7	19	38	1.79
40231242--40231271	14	2.1	15	93	6	53	50	0	0	50	1.00
40231439--40231477	17	2.3	17	86	0	51	64	2	2	30	1.21
40233196--40233225	2	15.0	2	100	0	60	50	50	0	0	1.00
40241034--40241088	20	2.8	20	82	0	74	27	5	20	47	1.72
40241155--40241201	20	2.3	20	85	7	60	31	6	19	42	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131