genome.fa.s9.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  47  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15484712--15484747	17	2.2	16	90	5	54	8	8	2	80	0.99
15484727--15484772	11	3.8	12	80	16	51	10	8	4	76	1.15
15484749--15484775	13	2.1	13	100	0	54	25	7	0	66	1.17
15491391--15491453	23	2.6	23	71	19	56	39	3	0	57	1.15
15494689--15494726	18	2.1	18	95	0	67	28	18	10	42	1.83
15495225--15495264	20	2.0	21	85	5	55	40	5	0	55	1.22
15502329--15502513	101	1.8	101	92	3	318	24	17	26	31	1.97
15502323--15502513	51	3.8	51	79	6	201	24	17	27	31	1.97
15502740--15502770	16	1.9	16	93	0	53	61	0	16	22	1.34
15506048--15506219	85	2.0	86	98	1	337	34	20	8	36	1.83
15508863--15508934	25	2.9	25	81	2	83	29	20	23	26	1.99
15511752--15511866	43	2.7	43	77	10	135	23	19	28	28	1.98
15514636--15514665	13	2.3	13	94	0	51	16	16	33	33	1.92
15519834--15519928	43	2.2	43	77	3	102	23	21	26	29	1.99
15527877--15527964	25	3.6	25	76	13	83	29	22	20	27	1.99
15527908--15527988	24	3.3	24	77	8	83	34	19	20	24	1.96
15539669--15539707	20	2.0	20	94	0	69	30	10	12	46	1.75
15541790--15541834	12	3.9	11	80	8	54	73	4	17	4	1.17
15541790--15541843	18	3.1	18	78	5	65	72	5	16	5	1.23
15541790--15541841	17	3.0	17	74	23	54	73	5	15	5	1.22
15541784--15541919	30	4.7	29	68	16	84	66	2	18	11	1.35
15541895--15541933	18	2.3	18	86	8	55	69	0	17	12	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15545878--15545923	21	2.1	22	88	4	67	43	0	10	45	1.39
15551771--15551812	22	1.9	22	95	0	75	71	0	0	28	0.86
15555290--15555326	18	2.1	18	89	0	56	62	5	13	18	1.50
15555773--15556098	50	6.5	50	84	1	388	28	21	29	20	1.98
15555773--15556057	150	1.9	150	90	0	453	27	21	30	21	1.98
15560409--15560463	29	2.0	27	86	13	76	60	9	14	16	1.59
15561263--15561322	31	1.9	32	83	10	79	43	3	23	30	1.70
15564298--15564370	37	2.0	38	84	10	98	71	4	9	15	1.27
15564335--15564372	15	2.5	15	95	4	67	76	2	10	10	1.12
15564611--15564663	21	2.5	21	90	3	79	33	33	1	30	1.69
15590240--15590300	29	2.1	30	90	3	97	42	0	36	21	1.53
15590609--15590638	9	3.3	9	90	0	51	43	20	13	23	1.86
15594655--15594724	36	1.9	36	82	0	86	21	10	32	35	1.87
15594849--15594951	38	2.7	39	89	1	154	33	11	10	43	1.76
15595019--15595068	23	2.2	23	85	0	64	30	12	14	44	1.81
15596431--15596510	27	3.0	27	83	5	92	36	12	26	25	1.91
15602233--15602403	29	5.9	29	81	2	132	35	23	15	24	1.94
15602250--15602406	58	2.7	58	79	2	165	35	22	16	25	1.95
15602499--15602954	227	2.0	227	88	0	678	29	23	14	32	1.94
15605789--15605881	42	2.2	41	90	3	141	32	16	15	36	1.89
15607964--15608242	40	7.0	40	84	0	333	37	19	27	15	1.91
15608135--15608199	20	3.2	20	74	8	78	38	18	32	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15607964--15608219	20	12.8	20	65	9	74	37	19	28	15	1.92
15610971--15611174	40	5.1	40	84	0	237	37	15	30	16	1.90
15611042--15611174	20	6.7	20	68	14	78	34	17	32	15	1.91
15615219--15615408	29	6.5	29	77	4	175	35	19	14	31	1.91
15615219--15615463	89	2.8	88	80	2	251	35	19	14	31	1.92
15615236--15615465	118	1.9	118	80	5	259	35	19	14	30	1.91
15615248--15615460	58	3.6	57	78	8	187	34	19	14	31	1.91
15615422--15615506	29	2.9	29	86	10	104	37	22	15	24	1.93
15615219--15615488	147	1.8	147	83	1	362	35	20	14	30	1.92
15618235--15618465	115	2.0	115	99	0	453	20	26	8	44	1.80
15626747--15626909	82	2.0	82	87	2	238	26	25	14	33	1.94
15632351--15632538	51	3.7	51	86	2	236	30	26	15	26	1.96
15635647--15635673	10	2.7	10	100	0	54	37	0	0	62	0.95
15640308--15640351	20	2.1	22	91	8	74	54	22	4	18	1.61
15678668--15678904	50	4.6	50	78	7	219	28	19	27	24	1.98
15678668--15678903	99	2.3	103	81	7	257	28	19	27	24	1.98
15682643--15682770	50	2.4	50	83	7	148	25	17	30	26	1.97
15683073--15683121	20	2.5	20	78	15	57	55	6	26	12	1.60
15685858--15685936	40	2.0	41	94	2	142	53	11	0	35	1.37
15691393--15691421	8	3.6	8	100	0	58	65	20	13	0	1.26
15699748--15699775	14	2.0	14	100	0	56	35	7	0	57	1.26
15700224--15700261	19	2.0	19	85	10	51	21	42	0	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15707767--15707792	13	2.0	13	100	0	52	30	30	23	15	1.95
15709234--15709304	20	3.5	20	73	7	63	38	18	29	14	1.90
15711373--15711424	25	2.1	25	100	0	104	36	15	7	40	1.76
15714534--15714573	20	2.0	21	95	5	73	20	20	20	40	1.92
15715363--15715591	43	5.5	43	80	9	215	22	16	25	35	1.94
15715356--15715591	85	2.8	84	88	1	323	22	16	26	34	1.95
15737735--15737774	20	2.0	20	85	0	53	22	17	0	60	1.37
15737810--15737846	17	2.2	17	90	0	56	35	8	8	48	1.62
15742053--15742094	14	3.0	14	86	13	59	64	2	9	23	1.35
15742376--15742414	12	2.9	13	85	14	53	66	2	10	20	1.33
15742024--15742632	304	2.0	307	96	1	1127	36	18	11	33	1.86
15753448--15753488	18	2.2	19	91	4	66	21	4	4	68	1.28
15755594--15755654	27	2.2	27	80	8	70	31	9	8	50	1.65
15756807--15756858	25	2.1	26	85	7	72	23	36	3	36	1.73
15759763--15759924	32	5.2	32	62	26	96	24	26	26	22	2.00
15759795--15759892	30	3.2	30	64	25	78	26	23	25	24	2.00
15759749--15759945	62	3.2	62	99	0	385	25	26	26	21	1.99
15760635--15760682	10	4.8	10	77	10	53	22	31	16	29	1.96
15760636--15760682	20	2.3	20	89	7	69	23	31	17	27	1.96
15764891--15764938	25	1.9	25	87	8	71	22	27	18	31	1.97
15795985--15796141	45	3.5	45	78	3	172	29	14	22	33	1.94
15801271--15801532	45	5.9	45	88	4	343	25	15	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15805008--15805124	39	3.0	39	87	0	162	35	10	11	43	1.74
15810940--15813058	822	2.6	822	86	4	2890	43	12	20	23	1.85
15815423--15815464	16	2.6	16	84	0	57	52	23	11	11	1.71
15817792--15817828	14	2.7	14	84	15	51	8	16	0	75	1.02
15817775--15817893	18	6.4	18	74	5	85	7	17	3	71	1.23
15817764--15817897	12	11.0	12	75	8	74	8	17	2	70	1.24
15818151--15818209	18	3.3	18	85	0	82	5	15	6	72	1.23
15818151--15818213	12	5.3	12	79	9	67	4	15	6	73	1.21
15818160--15818213	6	9.2	6	75	4	56	3	14	5	75	1.12
15817824--15818455	316	2.0	316	99	0	1237	17	21	16	44	1.87
15822866--15822891	13	2.0	13	100	0	52	53	23	7	15	1.67
15825258--15825317	30	2.0	30	83	6	77	31	26	16	25	1.96
15835431--15835470	13	3.0	13	85	14	55	15	7	7	70	1.33
15835417--15835453	17	2.3	15	86	13	56	10	8	2	78	1.06
15855862--15855926	20	3.3	19	73	16	51	38	16	21	23	1.93
15858548--15858597	10	5.0	10	78	9	57	28	28	14	30	1.95
15858548--15858594	20	2.3	20	89	7	69	27	29	14	27	1.96
15872253--15872280	11	2.5	11	100	0	56	14	7	0	78	0.95
15873855--15873898	22	2.0	22	100	0	88	45	22	9	22	1.80
15881008--15881059	27	1.9	27	84	0	68	17	34	21	26	1.95
15881067--15881142	27	2.8	27	79	0	89	22	32	19	25	1.97
15887561--15887656	1	96.0	1	90	0	147	94	3	1	1	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15887654--15887690	4	8.8	4	94	5	56	78	0	21	0	0.75
15889181--15889207	2	13.5	2	100	0	54	0	51	0	48	1.00
15897254--15897328	24	3.2	24	90	1	116	37	2	42	17	1.63
15897982--15898013	9	3.6	9	91	0	55	25	12	21	40	1.88
15898068--15898104	9	4.1	9	86	13	58	45	10	10	32	1.74
15921595--15921633	20	1.9	21	84	5	53	38	17	23	20	1.93
15923745--15923786	18	2.3	18	80	8	50	45	9	4	40	1.58
15943057--15943128	30	2.4	30	85	0	90	29	8	34	27	1.86
15971059--15971105	10	5.0	9	85	12	51	57	2	0	40	1.11
15971769--15971804	15	2.3	15	95	4	63	38	0	8	52	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131