genome.fa.s9.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  61  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19956217--19956429	44	4.8	44	96	0	381	32	22	23	21	1.98
19956217--19956484	132	2.0	132	82	4	326	33	21	24	20	1.97
19956412--19956792	129	3.0	129	93	1	626	33	18	22	24	1.97
19956803--19957106	44	7.0	44	70	8	147	28	19	25	26	1.99
19956777--19957432	217	2.9	223	85	6	812	31	18	22	28	1.97
19957231--19957353	44	2.8	43	85	7	158	30	19	21	28	1.98
19957231--19957396	88	1.9	88	81	7	203	33	17	20	28	1.95
19957041--19957521	233	2.1	233	90	0	766	32	17	20	29	1.96
19958038--19958071	13	2.6	13	100	0	68	29	55	0	14	1.40
19959033--19959070	19	2.1	19	85	5	51	23	5	5	65	1.34
19959571--19959607	19	1.9	19	94	0	65	16	13	16	54	1.72
19968279--19968373	35	2.7	35	91	0	154	16	9	31	42	1.81
19970143--19970277	67	2.0	68	97	1	254	42	11	13	33	1.79
19973552--19973581	11	2.8	11	95	5	53	66	0	16	16	1.25
19974573--19974645	27	2.8	25	82	8	92	16	26	23	34	1.95
19974681--19974774	25	3.8	25	79	6	102	21	25	20	32	1.97
19981535--19981559	6	4.2	6	100	0	50	84	0	0	16	0.63
19982744--19982780	17	2.1	18	90	5	58	29	32	10	27	1.90
19986746--19986784	14	2.8	14	80	0	51	30	41	15	12	1.85
19986737--19986800	21	3.0	21	83	0	83	26	35	17	20	1.94
19988941--19989016	36	2.1	36	83	9	93	46	0	19	34	1.51
19988969--19989026	17	3.3	17	71	17	55	39	0	24	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19988956--19989029	36	2.0	37	94	2	132	39	0	22	37	1.55
19989017--19989062	21	2.2	21	92	3	76	34	2	26	36	1.69
19989142--19989269	40	3.3	40	68	12	115	21	21	22	34	1.97
19989089--19989303	75	2.9	75	88	2	317	23	20	22	33	1.98
19989113--19989303	35	5.2	35	68	13	105	23	21	23	32	1.98
19996352--19997193	420	2.0	421	99	0	1668	28	20	18	33	1.96
20012294--20012504	105	2.0	105	98	1	406	35	12	21	30	1.90
20019528--20019571	21	2.1	21	95	0	79	40	9	13	36	1.76
20019527--20019582	21	2.8	19	79	10	67	39	10	16	33	1.83
20019561--20019605	23	2.0	23	86	4	65	37	6	17	37	1.76
20019571--20019615	23	2.0	23	82	4	56	33	6	15	44	1.73
20025696--20025747	26	2.0	26	96	0	95	30	13	7	48	1.71
20027985--20028128	44	3.3	44	66	7	112	23	31	24	20	1.98
20027892--20028469	88	6.6	88	89	0	798	26	27	24	21	1.99
20028469--20028844	44	8.7	44	82	6	419	28	18	25	27	1.98
20028471--20028798	170	1.9	170	86	2	471	29	17	25	28	1.97
20028470--20028826	126	2.7	129	86	6	463	29	18	24	27	1.98
20029618--20029701	19	4.4	18	81	8	71	38	9	17	34	1.83
20029620--20029694	19	3.8	19	89	6	114	37	10	16	36	1.83
20029621--20029683	21	3.1	21	95	4	112	38	9	14	38	1.78
20029673--20029717	23	2.0	23	86	4	65	37	6	17	37	1.76
20029683--20029727	23	2.0	23	82	4	56	33	6	15	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20029952--20029991	3	13.3	3	84	10	55	32	0	0	67	0.91
20029936--20029990	15	3.7	15	74	16	53	30	0	1	67	1.01
20029938--20029989	12	4.1	12	80	14	52	28	0	1	69	0.99
20033407--20033433	2	13.5	2	100	0	54	51	0	0	48	1.00
20039366--20039455	46	2.0	44	85	8	119	32	25	17	24	1.97
20045198--20045229	16	2.0	16	93	0	55	25	15	0	59	1.36
20045462--20045640	51	3.5	51	74	15	181	32	27	15	24	1.95
20047203--20047235	17	1.9	17	88	11	50	24	0	18	57	1.40
20048335--20048383	20	2.5	19	78	15	55	44	8	8	38	1.64
20053538--20053740	42	4.8	42	80	11	195	31	24	16	28	1.96
20079055--20079090	18	2.1	18	89	5	56	13	16	0	69	1.19
20079126--20079178	21	2.4	24	76	20	62	5	16	5	71	1.25
20084197--20084258	29	2.1	29	87	0	88	22	35	22	19	1.96
20084506--20084556	23	2.2	23	100	0	102	45	13	17	23	1.84
20088919--20088958	11	3.3	12	82	10	55	35	0	0	65	0.93
20094436--20094628	96	2.0	97	98	1	379	50	16	2	30	1.58
20122207--20122248	19	2.2	19	87	8	59	57	7	0	35	1.26
20122837--20122884	25	1.9	25	83	8	62	41	10	4	43	1.58
20128714--20128811	49	2.0	49	100	0	196	53	16	12	18	1.73
20130270--20130419	75	2.0	75	92	0	246	33	18	14	33	1.91
20134474--20134529	25	2.2	24	87	6	76	37	16	26	19	1.92
20135674--20135716	23	2.0	22	86	9	61	41	4	9	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20135811--20135867	26	2.1	27	84	9	73	66	0	29	3	1.08
20136749--20136804	19	2.8	19	86	5	76	35	8	17	37	1.82
20136762--20136827	23	3.0	23	81	12	68	36	7	18	37	1.79
20136781--20136827	23	2.0	24	87	4	69	38	6	17	38	1.75
20137012--20137056	23	2.0	23	81	0	54	22	0	15	62	1.33
20139122--20139368	50	4.8	50	79	4	201	27	21	27	23	1.99
20148421--20148496	35	2.1	36	95	2	136	38	3	17	40	1.68
20148505--20148548	14	3.1	14	83	0	61	70	0	29	0	0.88
20149249--20149300	26	2.0	26	100	0	104	42	15	11	30	1.82
20149639--20149674	3	12.0	3	93	0	63	0	30	0	69	0.89
20150772--20150813	19	2.2	20	86	4	59	21	4	0	73	1.01
20150870--20150929	19	3.1	19	78	2	66	28	3	3	65	1.25
20150991--20151116	9	14.1	9	70	19	77	32	1	3	62	1.20
20150991--20151038	19	2.6	18	81	12	60	37	0	2	60	1.09
20150990--20151066	29	2.6	30	86	8	97	36	1	2	59	1.19
20150967--20151112	8	16.4	8	72	17	69	29	2	4	64	1.23
20152676--20152766	27	3.4	27	73	3	85	16	16	27	39	1.90
20158230--20158256	14	1.9	14	100	0	54	37	14	18	29	1.91
20162433--20162482	25	2.0	25	100	0	100	40	24	20	16	1.91
20163358--20163389	16	2.0	16	100	0	64	6	12	37	43	1.68
20163558--20163606	9	5.4	9	95	0	89	42	22	10	24	1.84
20163626--20163673	14	3.7	13	80	8	53	20	2	10	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20164569--20164633	27	2.4	27	97	0	121	30	24	32	12	1.92
20167777--20168055	132	2.1	132	93	1	470	29	26	19	25	1.99
20168054--20168453	44	9.0	44	76	3	372	28	24	17	29	1.97
20168057--20168453	89	4.5	89	92	0	607	28	24	17	29	1.97
20168439--20168481	22	2.0	22	90	0	68	30	13	23	32	1.93
20168396--20168639	66	3.7	66	98	0	479	28	21	18	30	1.97
20168505--20168613	22	5.0	22	65	8	69	29	18	20	32	1.96
20169313--20169355	22	2.0	22	95	0	77	39	20	13	25	1.90
20176537--20176576	20	2.0	20	90	0	62	32	12	22	32	1.91
20182622--20182691	29	2.3	29	80	4	77	30	11	10	48	1.72
20182684--20183094	203	2.0	203	98	0	795	24	14	11	49	1.76
20187970--20188009	17	2.4	17	95	0	71	40	10	10	40	1.72
20189561--20189599	20	2.0	20	85	10	53	43	10	10	35	1.73
20195380--20195451	27	2.7	27	71	0	72	30	25	18	26	1.98
20200718--20200756	14	2.8	14	96	0	69	61	0	2	35	1.10
20200717--20200756	17	2.4	17	87	8	55	62	0	2	35	1.09
20201334--20201383	23	2.3	20	83	12	64	72	6	18	4	1.22
20201805--20201839	13	2.5	15	86	13	56	28	0	0	71	0.86
20213552--20213623	36	2.0	36	94	5	128	22	30	13	33	1.93
20215627--20215655	10	2.9	10	100	0	58	27	20	10	41	1.85
20223741--20223773	13	2.7	13	90	9	52	36	12	15	36	1.84
20224438--20224493	28	1.9	30	82	7	71	39	7	23	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20225049--20225284	50	4.7	50	88	3	339	27	16	26	28	1.97
20227050--20227091	22	1.9	22	90	0	66	14	19	9	57	1.64
20232225--20232272	6	7.7	6	86	9	69	79	2	16	2	0.93
20239824--20240011	51	3.7	50	82	3	207	29	27	16	26	1.97
20243466--20243537	35	2.1	35	97	0	135	16	29	16	37	1.91
20247334--20247517	51	3.6	51	83	4	194	33	25	14	27	1.94
20254165--20254258	33	2.6	37	83	8	115	34	19	20	26	1.96
20254060--20254261	19	10.9	19	68	7	101	38	20	17	23	1.93
20262409--20262433	11	2.3	11	100	0	50	48	8	0	44	1.32
20274298--20274371	37	2.0	37	100	0	148	32	21	5	40	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131