genome.fa.s9.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  25  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8235848--8236915	44	23.8	44	70	12	271	27	21	18	32	1.97
8235897--8236101	41	4.7	41	73	14	140	27	18	21	32	1.96
8235987--8236138	52	3.1	52	66	19	155	29	15	17	37	1.91
8235943--8236148	93	2.2	93	98	0	394	27	16	19	36	1.93
8236343--8236910	222	2.6	220	85	4	689	26	22	18	31	1.97
8236497--8236915	178	2.4	178	90	0	658	27	22	19	30	1.98
8237194--8237249	24	2.3	24	100	0	112	28	26	12	32	1.93
8241484--8241528	19	2.3	20	85	7	58	37	11	24	26	1.89
8244187--8244240	19	2.8	19	97	0	99	35	18	11	35	1.86
8245845--8246097	42	6.0	42	82	5	278	31	21	20	26	1.98
8246500--8246589	21	4.3	21	85	0	99	3	42	20	34	1.68
8250030--8250737	364	1.9	364	93	1	1213	35	20	15	29	1.93
8250807--8250850	13	3.2	13	77	22	54	52	4	0	43	1.22
8250783--8250863	24	3.2	24	80	13	99	44	8	1	45	1.42
8250783--8250866	28	3.2	26	77	12	82	42	8	1	47	1.41
8251241--8251323	21	4.4	20	74	18	72	33	45	3	16	1.65
8251241--8251323	38	2.2	38	91	2	132	33	45	3	16	1.65
8251234--8251307	7	9.9	7	71	18	51	32	47	2	17	1.62
8251603--8251781	99	1.8	99	92	0	304	27	25	23	23	2.00
8252003--8252041	7	5.9	7	85	11	55	30	51	0	17	1.46
8252033--8252107	14	5.1	14	75	10	60	38	32	1	28	1.65
8252178--8252231	7	7.6	7	81	4	63	50	31	0	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8252285--8252311	13	2.1	13	100	0	54	37	22	7	33	1.82
8252492--8252738	72	3.4	72	87	3	336	27	25	22	24	2.00
8252636--8252967	114	2.9	115	85	2	436	27	23	23	25	2.00
8252750--8253149	187	2.1	187	84	0	521	27	23	22	26	2.00
8252875--8253035	73	2.2	73	83	2	189	31	21	19	26	1.98
8252947--8253246	114	2.6	114	87	3	408	26	27	23	24	2.00
8252569--8253245	301	2.3	300	84	2	923	26	24	23	25	2.00
8256668--8256715	22	2.2	22	85	7	62	41	10	0	47	1.37
8261201--8261289	46	2.0	44	91	4	142	35	31	4	28	1.77
8261279--8261323	16	2.8	16	93	0	72	26	31	0	42	1.56
8262040--8262093	28	1.9	28	88	0	81	18	9	22	50	1.75
8264626--8264656	9	3.4	9	90	0	53	25	12	22	38	1.90
8266386--8266446	31	2.0	31	87	6	88	39	8	8	44	1.64
8274683--8274715	14	2.4	14	90	10	50	0	0	63	36	0.95
8276952--8277342	31	12.7	31	87	2	495	30	8	16	43	1.78
8276952--8277342	123	3.2	122	84	4	498	30	8	16	43	1.78
8276942--8277342	185	2.2	185	86	3	574	30	8	16	44	1.78
8279527--8279570	12	3.7	11	82	11	52	79	0	20	0	0.73
8280178--8280209	16	1.9	17	93	6	57	53	0	21	25	1.46
8280483--8280569	21	4.1	21	83	4	104	18	20	24	36	1.95
8280483--8280569	44	2.0	41	82	6	102	18	20	24	36	1.95
8281440--8281464	8	3.1	8	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8286685--8286729	21	2.1	21	95	0	81	31	15	15	37	1.89
8290939--8290979	21	2.0	21	90	0	64	29	17	26	26	1.97
8291439--8291773	6	54.7	6	84	5	375	19	5	13	61	1.50
8295820--8295848	14	2.1	14	100	0	58	31	6	20	41	1.79
8296043--8296074	9	3.6	9	100	0	64	25	9	28	37	1.87
8296103--8296142	9	4.2	9	84	12	53	20	10	27	42	1.83
8296101--8296144	20	2.2	20	95	0	79	18	9	25	47	1.77
8296112--8296144	11	3.2	11	83	16	52	18	9	27	45	1.79
8296042--8296183	68	2.1	66	94	2	248	29	16	19	35	1.93
8296785--8296849	21	3.2	21	75	16	66	36	40	13	9	1.77
8296795--8296854	18	3.2	18	75	13	66	38	38	13	10	1.78
8297521--8297600	36	2.2	36	88	0	124	45	23	11	20	1.83
8297543--8297623	36	2.2	36	82	8	94	50	24	8	16	1.72
8297963--8298001	3	13.0	3	88	0	60	0	38	0	61	0.96
8298636--8298679	19	2.3	19	84	7	54	13	6	6	72	1.25
8299612--8299637	12	2.2	12	100	0	52	50	15	7	26	1.71
8299949--8299988	11	3.6	11	93	6	64	22	35	0	42	1.54
8301172--8301197	7	3.7	7	100	0	52	26	0	15	57	1.38
8301848--8301887	18	2.2	18	95	0	71	22	30	7	40	1.81
8302316--8302363	25	1.9	25	95	0	87	47	0	12	39	1.41
8302317--8302374	25	2.4	25	85	5	75	46	0	12	41	1.41
8302403--8304162	23	77.6	23	71	19	1075	48	25	0	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8302454--8304228	45	39.8	45	80	11	1652	48	25	0	26	1.54
8302931--8302965	15	2.3	15	95	0	61	57	22	0	20	1.41
8302895--8302986	37	2.4	36	77	10	87	54	22	0	22	1.45
8302931--8303000	15	4.6	14	71	25	54	55	21	0	22	1.43
8304120--8304206	38	2.3	38	87	0	129	51	24	0	24	1.48
8304166--8304237	23	3.2	23	80	4	92	45	31	0	22	1.52
8304434--8306240	23	80.4	23	72	16	1067	48	25	0	25	1.55
8304434--8306306	45	42.4	42	73	18	1145	48	25	0	25	1.55
8304710--8304748	15	2.6	15	100	0	78	53	28	0	17	1.44
8304731--8306334	46	36.1	46	76	12	1278	48	25	0	25	1.55
8304725--8306326	91	18.0	91	79	12	1412	48	25	0	25	1.55
8305450--8305563	59	1.9	59	89	1	176	49	25	0	25	1.51
8305408--8305608	104	2.0	99	83	10	253	49	25	0	24	1.54
8305894--8306303	23	18.8	20	72	18	138	47	26	0	26	1.54
8305683--8306208	68	7.9	62	75	14	391	46	25	0	26	1.56
8306174--8306301	61	2.1	61	89	2	195	48	28	0	23	1.51
8306224--8306255	15	2.2	14	94	5	55	56	21	0	21	1.43
8306266--8306334	23	3.0	23	89	2	102	53	18	0	27	1.45
8306003--8306339	84	4.0	84	83	9	400	48	24	0	26	1.54
8306329--8306571	115	2.1	116	95	0	434	40	9	6	43	1.64
8314353--8314389	14	2.6	15	87	8	51	32	0	0	67	0.91
8315021--8315059	18	2.2	19	86	9	55	61	0	2	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8320009--8320042	16	2.1	16	89	10	52	41	0	0	58	0.98
8320034--8320101	26	2.6	27	77	13	70	51	0	2	45	1.16
8320608--8320639	6	5.3	6	96	0	55	37	12	0	50	1.41
8320826--8320859	18	1.9	17	88	5	50	50	11	2	35	1.54
8320769--8320858	44	2.0	44	87	4	128	47	5	8	37	1.58
8322654--8322717	31	2.1	31	100	0	128	18	3	39	39	1.67
8322680--8322949	146	1.8	146	99	0	531	28	12	22	36	1.91
8329801--8329887	31	2.8	31	89	0	129	36	4	2	56	1.33
8342129--8342206	21	3.7	22	83	6	90	12	28	11	47	1.76
8343114--8343154	19	2.1	20	86	4	57	21	9	12	56	1.65
8343621--8343689	27	2.5	28	90	6	106	39	10	1	49	1.46
8343691--8343725	13	2.8	12	87	8	52	85	11	2	0	0.69
8343754--8343831	27	2.9	28	80	7	97	26	21	42	8	1.83
8343886--8343977	14	6.4	14	74	9	71	69	0	29	1	0.95
8343911--8343977	18	3.6	18	78	7	80	67	0	31	1	1.00
8343895--8343984	10	9.4	10	72	18	75	67	0	31	1	0.98
8343886--8343946	24	2.5	24	84	7	79	72	0	27	0	0.85
8343957--8344044	38	2.3	39	75	14	69	68	1	29	1	1.04
8343901--8343984	28	3.0	27	76	10	80	66	0	32	1	0.99
8349340--8349373	17	2.0	17	94	0	59	29	20	35	14	1.93
8350551--8350595	18	2.5	18	85	0	63	28	4	46	20	1.69
8354003--8354249	82	3.0	82	95	1	424	38	12	13	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8358004--8358040	17	2.2	17	100	0	74	45	8	16	29	1.76
8359215--8359292	24	2.8	30	66	28	80	33	0	10	53	1.35
8359286--8359321	9	3.9	9	88	3	54	2	2	8	86	0.77
8359300--8359331	16	2.0	16	93	0	55	6	3	6	84	0.86
8359288--8359330	18	2.4	17	81	11	50	4	4	4	86	0.80
8359286--8359340	28	2.0	28	82	7	67	9	3	7	80	1.02
8359375--8359400	13	2.0	13	100	0	52	23	0	0	76	0.78
8359407--8359447	19	2.2	19	86	8	57	68	4	0	26	1.10
8360164--8360317	10	15.7	10	63	24	53	0	31	0	67	0.96
8360142--8360292	38	4.3	34	80	16	141	0	32	0	66	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131