genome.fa.s9.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr2
Parameters: 2 7 7 80 10 50 1000
Length:  43198478

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  96  of  131  ( 15627 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32051740--32051827	42	2.1	42	85	4	115	23	28	19	28	1.98
32053506--32053582	36	2.1	36	97	0	145	37	15	20	25	1.92
32058023--32058052	13	2.3	13	94	0	51	50	3	0	46	1.18
32058931--32058976	24	1.9	24	86	0	65	50	10	26	13	1.74
32063652--32063719	30	2.3	30	82	12	86	27	27	5	38	1.80
32066985--32067047	22	2.9	21	75	15	56	33	3	12	50	1.56
32070311--32070348	2	19.0	2	100	0	76	0	50	0	50	1.00
32085010--32085050	18	2.3	18	100	0	82	39	0	19	41	1.52
32086271--32086350	32	2.5	32	91	4	126	36	15	13	35	1.86
32086601--32086703	41	2.5	41	95	0	179	27	17	24	31	1.97
32089869--32089907	19	2.1	18	85	4	51	12	17	2	66	1.35
32090106--32090132	12	2.2	12	100	0	54	66	0	7	25	1.17
32090567--32090615	20	2.7	18	77	22	57	51	4	2	42	1.32
32098287--32098350	29	2.2	30	82	2	76	53	10	12	23	1.70
32098294--32098357	29	2.2	29	80	0	74	54	12	10	21	1.68
32100859--32100929	24	3.0	24	89	0	106	14	15	28	42	1.86
32100861--32100946	24	3.6	24	82	6	102	17	15	24	43	1.87
32108040--32108069	16	1.9	16	93	6	53	30	0	20	50	1.49
32114247--32114510	132	2.0	132	99	0	519	29	11	20	38	1.87
32117583--32117609	14	1.9	14	100	0	54	29	0	70	0	0.88
32119240--32119282	18	2.4	18	88	0	59	9	13	6	69	1.35
32129914--32129976	31	2.0	31	81	6	74	33	1	12	52	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32129994--32130030	19	1.9	19	89	10	58	45	0	0	54	1.00
32134729--32134794	22	3.0	21	76	6	60	68	4	0	27	1.09
32140758--32140902	50	2.9	51	84	5	204	24	17	27	30	1.97
32140904--32140990	45	1.9	45	92	0	147	26	16	22	34	1.95
32144199--32144362	82	2.0	82	97	2	312	42	15	7	34	1.75
32150153--32150251	38	2.6	38	79	3	110	49	8	4	38	1.51
32154856--32154887	16	2.0	16	100	0	64	25	18	12	43	1.85
32154960--32155178	45	4.9	45	78	0	186	23	18	14	44	1.86
32156377--32156444	34	2.0	34	88	0	100	27	10	19	42	1.83
32157433--32157635	45	4.5	45	79	4	205	21	19	15	43	1.87
32157474--32157637	90	1.8	89	85	1	229	21	20	14	43	1.87
32160122--32160189	36	1.9	36	87	3	102	36	22	13	27	1.91
32161870--32161940	9	7.4	9	74	16	54	0	30	0	69	0.89
32161871--32161918	20	2.3	20	85	3	69	0	27	0	72	0.84
32162750--32162784	15	2.3	15	95	0	61	62	5	0	31	1.18
32166093--32166340	129	2.0	125	83	9	321	29	13	20	36	1.91
32167813--32167921	45	2.5	44	84	4	157	18	21	11	49	1.77
32170720--32170837	61	1.9	61	82	3	148	34	9	12	43	1.75
32176382--32176448	1	67.0	1	72	0	53	0	13	0	86	0.57
32176385--32176438	7	7.9	7	84	12	67	0	14	0	85	0.61
32176384--32176439	8	6.9	8	77	18	62	0	14	0	85	0.59
32176381--32176458	37	2.1	38	83	11	99	0	17	1	80	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32176392--32176458	33	2.0	33	83	11	84	0	17	1	80	0.79
32176561--32176615	24	2.2	24	87	9	76	0	27	0	72	0.85
32176564--32176603	20	2.0	21	85	5	55	0	30	0	70	0.88
32177124--32177232	30	3.7	29	81	7	121	41	1	22	34	1.64
32177114--32177233	59	2.0	60	83	4	154	42	2	20	35	1.65
32177510--32178073	75	7.3	75	78	9	544	34	22	18	25	1.96
32177509--32178067	150	3.6	150	85	9	741	33	22	18	25	1.96
32177773--32177949	91	1.9	91	88	4	268	32	24	18	23	1.97
32177697--32178024	166	2.0	166	92	2	543	33	23	17	25	1.97
32177622--32178067	241	1.9	241	89	3	711	33	22	17	25	1.96
32188327--32188400	10	8.0	9	74	16	62	2	21	0	75	0.92
32188325--32188397	13	5.4	12	72	23	56	2	19	0	78	0.88
32188323--32188399	28	2.8	28	96	3	140	2	20	0	76	0.90
32188321--32188373	19	2.7	20	75	21	58	1	22	0	75	0.90
32189058--32189165	30	3.7	29	82	2	126	43	4	20	31	1.72
32204448--32204491	17	2.6	17	82	7	54	54	0	2	43	1.12
32204445--32204491	12	4.1	12	74	20	55	51	0	2	46	1.13
32204960--32204996	19	1.9	19	89	10	58	35	0	5	59	1.20
32207744--32207785	20	2.1	20	91	8	68	28	0	11	59	1.33
32208639--32208676	16	2.4	16	100	0	76	23	0	39	36	1.55
32208912--32208946	18	2.0	17	88	5	52	54	0	0	45	0.99
32213645--32213669	13	1.9	13	100	0	50	36	0	16	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32214393--32214438	24	2.0	23	83	12	58	39	6	4	50	1.48
32217226--32217468	50	4.7	50	87	5	317	22	27	23	27	1.99
32223431--32223466	16	2.2	16	95	0	63	25	0	33	41	1.55
32223573--32223608	16	2.2	16	95	0	63	25	0	33	41	1.55
32223377--32223661	142	2.0	143	97	0	545	30	9	26	33	1.87
32223825--32223879	15	3.4	16	80	16	53	54	1	0	43	1.10
32223831--32223879	16	2.9	18	80	20	61	55	0	0	44	0.99
32231396--32231430	17	2.1	17	94	0	61	22	14	17	45	1.84
32246008--32246088	21	3.8	22	80	9	96	17	22	22	38	1.93
32251303--32251369	26	2.6	26	71	4	64	65	2	1	29	1.16
32252904--32252948	21	2.2	21	84	11	58	26	0	8	64	1.23
32271261--32271301	19	2.1	19	90	4	64	39	0	19	41	1.52
32276156--32276523	69	5.3	68	80	2	340	39	22	21	16	1.92
32276157--32276517	138	2.6	138	83	0	425	38	22	21	16	1.93
32279776--32279819	23	1.9	23	81	9	54	34	2	9	54	1.44
32282878--32282931	19	2.8	19	97	0	99	38	11	16	33	1.84
32283142--32283262	51	2.4	51	90	0	179	23	18	26	31	1.97
32283954--32284011	19	2.7	22	84	10	68	39	8	17	34	1.80
32284838--32285087	24	10.7	24	70	15	148	34	6	4	55	1.46
32284836--32285003	70	2.4	69	78	9	180	32	6	4	55	1.46
32284797--32285078	69	4.1	68	74	14	206	34	6	4	54	1.47
32288136--32288201	24	2.8	24	73	13	64	34	25	25	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32288136--32288318	48	3.7	49	73	12	128	36	22	23	18	1.95
32288196--32288261	23	2.8	23	75	13	62	34	19	24	21	1.96
32288254--32288328	26	2.9	26	82	4	89	37	22	22	17	1.94
32288607--32288658	22	2.4	22	96	0	95	53	21	0	25	1.45
32288793--32288831	5	7.6	5	82	5	51	41	17	0	41	1.50
32305703--32305728	4	6.5	4	100	0	52	26	0	23	50	1.50
32310128--32310161	15	2.3	15	90	5	52	67	5	0	26	1.13
32310358--32310399	22	1.9	22	90	0	66	33	0	33	33	1.58
32310349--32310451	52	2.0	51	83	9	129	34	0	32	33	1.58
32310401--32310492	22	4.2	23	82	8	111	42	0	27	30	1.56
32310401--32310492	44	2.1	44	85	4	123	42	0	27	30	1.56
32310917--32310962	24	1.9	24	95	0	83	45	0	0	54	0.99
32313013--32313049	17	2.1	18	90	5	58	72	2	0	24	0.97
32317561--32317784	120	1.9	119	82	6	283	35	24	16	24	1.95
32318751--32319052	157	1.9	155	87	4	437	33	13	15	37	1.87
32321184--32321218	10	3.2	11	88	12	54	17	37	0	45	1.48
32321201--32321256	22	2.5	22	91	2	94	26	33	0	39	1.57
32321614--32321648	10	3.2	11	88	12	54	17	37	0	45	1.48
32321631--32321686	22	2.5	22	91	2	94	26	33	0	39	1.57
32322865--32322896	7	4.6	7	100	0	64	28	0	12	59	1.34
32323551--32323585	18	1.9	18	94	0	61	25	31	8	34	1.86
32323992--32324076	44	1.9	45	88	7	129	36	0	14	49	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32324626--32324667	17	2.4	18	80	4	50	42	9	2	45	1.49
32326086--32326134	22	2.2	22	100	0	98	18	34	26	20	1.95
32327687--32328038	126	2.8	122	85	7	483	32	20	15	30	1.94
32330178--32330571	100	3.9	100	82	0	500	24	20	22	33	1.97
32330182--32330574	200	2.0	200	89	0	597	23	20	22	33	1.97
32330213--32330571	50	7.2	50	71	3	256	24	20	22	33	1.97
32330572--32330659	44	2.0	45	86	2	124	25	30	19	25	1.98
32330800--32331517	88	8.2	88	81	4	797	23	25	23	27	2.00
32331214--32331357	44	3.3	44	67	9	114	25	25	24	25	2.00
32330751--32331512	351	2.2	353	84	3	991	23	24	23	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131